Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_O16
(1278 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.016
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.064
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.085
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.44
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.016
Identities = 24/79 (30%), Positives = 24/79 (30%)
Frame = -3
Query: 916 PPXPXPXGXXPPPPPXGGGXXPPXXXXXXXXXXXAPPPPXGXXAPXXPXXXAGAQPXRXP 737
PP P P PP P G P APP P AP P A P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVA------APPVPVPSGAPPVPKPSVAAPPVPAP 1155
Query: 736 XGXFPGGTPRXXXXPXXXP 680
G P P P P
Sbjct: 1156 SGAPPVPKPSVAAPPVPAP 1174
Score = 34.7 bits (76), Expect = 0.028
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -3
Query: 916 PPXPXPXGXXPPPPPXGGGXXPPXXXXXXXXXXXAPPPPXGXXAPXXPXXXAGAQPXRXP 737
PP P P PP P G P PP P AP P G P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPP-----VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Query: 736 XGXFPGGTPRXXXXPXXXP 680
P TP P P
Sbjct: 1214 STAPPVPTPSAGLPPVPVP 1232
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Frame = -3
Query: 916 PPXPXPXGXXPPPPPXGGG----XXPPXXXXXXXXXXXAPPPPXGXXAPXXPXXXAGAQP 749
PP P P PP P G P PP P AP P AG P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Query: 748 XRXPXGXFP 722
P P
Sbjct: 1229 VPVPTAKAP 1237
Score = 27.5 bits (58), Expect = 4.2
Identities = 27/120 (22%), Positives = 31/120 (25%), Gaps = 7/120 (5%)
Frame = -3
Query: 916 PPXPXPXGXXPPPPPXGGG-------XXPPXXXXXXXXXXXAPPPPXGXXAPXXPXXXAG 758
PP P P P P G P APP P P P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVA 1100
Query: 757 AQPXRXPXGXFPGGTPRXXXXPXXXPPLXXGAXXXHXLPXGXXSXMXPPXDXAXXXTPAP 578
A P P P P PP+ + +P + P A PAP
Sbjct: 1101 APPVPKPSVAVP-----PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155
Score = 27.1 bits (57), Expect = 5.6
Identities = 26/116 (22%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Frame = -3
Query: 916 PPXPXPXGXXPPPPPXGGG---XXPPXXXXXXXXXXXAPPPPXGXXAPXXPXXXAGAQPX 746
PP P P PP P P AP P AP A P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA-PS 1080
Query: 745 RXPXGXFPGGTPRXXXXPXXXPPLXXGAXXXHXLPXGXXSXMXPPXDXAXXXTPAP 578
P P G P PP+ + +P + P A P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Score = 26.2 bits (55), Expect = 9.7
Identities = 31/138 (22%), Positives = 32/138 (23%), Gaps = 7/138 (5%)
Frame = -1
Query: 960 PGGXPXXXXXPGXXPXPXRXXGGXPPPPPXXGXXXXX-PXXXPXTXXXXXPPPP---PXG 793
P G P G P P P P P P P PP P G
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 792 XXPHXXPXXXXGP---NXXXXXXXXXXXXXXXXXXXXXGXPPXXXGRXXXTXSPGGXPPX 622
P P P G PP P PP
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP---PPS 1195
Query: 621 WXPPXTPPFXXXPPLGPP 568
PP P PP+ PP
Sbjct: 1196 EAPPVPKPSVGVPPVPPP 1213
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.064
Identities = 29/102 (28%), Positives = 29/102 (28%), Gaps = 4/102 (3%)
Frame = -3
Query: 970 GXPPRGXPXXGXXXRXXXPPXPXPXGXXP---PPPPXGGGXXPPXXXXXXXXXXXAPPPP 800
G PP G G PP P P P PP G PP PPP
Sbjct: 323 GKPPIGN---GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPL 379
Query: 799 XGXXAPXXPXXXAGAQPXRXPXGXFP-GGTPRXXXXPXXXPP 677
A P A P R P G R P PP
Sbjct: 380 SSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421
Score = 33.1 bits (72), Expect = 0.085
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = -3
Query: 949 PXXGXXXRXXXPPXPXPXGXXPPPPPXGGGXXPPXXXXXXXXXXXAPP-PPXGXXAPXXP 773
P G R PP P P P PP PP APP PP AP P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP---SLPMGAPAAPPLPPSAPIAPPLP 460
Query: 772 XXXAGAQP 749
A P
Sbjct: 461 AGMPAAPP 468
Score = 31.9 bits (69), Expect = 0.20
Identities = 28/133 (21%), Positives = 31/133 (23%), Gaps = 1/133 (0%)
Frame = -1
Query: 960 PGGXPXXXXXPGXXPXPXRXXGGXPPPPPXXGXXXXX-PXXXPXTXXXXXPPPPPXGXXP 784
P P G P P + PPPPP P + PP PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 783 HXXPXXXXGPNXXXXXXXXXXXXXXXXXXXXXGXPPXXXGRXXXTXSPGGXPPXWXPPXT 604
P N PP +P P P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM-GAPAAPPLPPSAPIA 456
Query: 603 PPFXXXPPLGPPL 565
PP P PPL
Sbjct: 457 PPLPAGMPAAPPL 469
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -1
Query: 888 PPPPPXXGXXXXXPXXXPXTXXXXXPPPPP 799
PPPPP P + PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -1
Query: 888 PPPPPXXGXXXXXPXXXPXTXXXXXPPPPP 799
PPPPP P + PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 26.6 bits (56), Expect = 7.3
Identities = 27/122 (22%), Positives = 29/122 (23%), Gaps = 1/122 (0%)
Frame = -1
Query: 930 PGXXPXPXRXXGGXPP-PPPXXGXXXXXPXXXPXTXXXXXPPPPPXGXXPHXXPXXXXGP 754
P P P R G PP P P + P PP G P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 753 NXXXXXXXXXXXXXXXXXXXXXGXPPXXXGRXXXTXSPGGXPPXWXPPXTPPFXXXPPLG 574
+ PP GR P G P P PP
Sbjct: 371 STGRQPPPLSSSRAVSNPP---APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA 427
Query: 573 PP 568
PP
Sbjct: 428 PP 429
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.085
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -1
Query: 948 PXXXXXPGXXPXPXRXXGGXPPPPPXXGXXXXXPXXXPXTXXXXXPPPP 802
P P P P GG PPPPP G P P PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-------PPPP 783
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -3
Query: 913 PXPXPXGXXPPPPPXGGGXXPPXXXXXXXXXXXAPPPP 800
P P P PPP P GG PP PPPP
Sbjct: 744 PAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 965 PXPGGPXXRXXXPXXXPXPXXXXGGXPPPPP 873
P GGP P P P G PPPPP
Sbjct: 756 PIMGGP------PPPPPPPGVAGAGPPPPPP 780
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 395 GGGXGGGXXXXGGRGAXSXXXGGRXXXRRGXR 490
GGG GG GGRG GG R G +
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 395 GGGXGGGXXXXGGRGAXSXXXGGRXXXRRG 484
GGG GG GGRG GGR R G
Sbjct: 29 GGGRGGAR--GGGRGGARGGRGGRGGARGG 56
Score = 25.4 bits (53), Expect(2) = 0.44
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 395 GGGXGGGXXXXGGRGAXSXXXGGRXXXRRG 484
GG GG GGRG GG RG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRG 41
Score = 23.8 bits (49), Expect(2) = 0.44
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 566 KGGPRGGXXXXGGVXGG 616
+GG RGG GG GG
Sbjct: 40 RGGARGGRGGRGGARGG 56
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 2.4
Identities = 27/85 (31%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Frame = +2
Query: 569 GGPRGGXXXXGGVXG----GXHXGGXPPGEXVXXXRPXXXGGXPXXXXXXPGGSPGEXPX 736
GGP G GG G G H GG GG P PGG G P
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGH-----------GGFGGGPGGFEGGPGGF-GGGPG 245
Query: 737 GXPXXLGPXXXXGXXWGXXPXGGGG 811
G LG +G P G GG
Sbjct: 246 GFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 26.2 bits (55), Expect = 9.7
Identities = 21/69 (30%), Positives = 22/69 (31%)
Frame = +3
Query: 711 GVPPGKXPXGXRXGWAPAXXXGXXGAXFPXGGGGAXXXXXXXXXXXGGXXPPPXGGGGGX 890
G PPG G G+ F G GG GG P G GGG
Sbjct: 199 GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG-------FEGGPGGFGGGPGGFGGGL 251
Query: 891 XPXGXGXGG 917
G G GG
Sbjct: 252 GGFGGGPGG 260
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Frame = -3
Query: 979 KXXGXPPRGXPXXGXXXRXXXPPXPXPXGXXPPPPPXGGGXXPPXXXXXXXXXXXAPPPP 800
K G P R P PPPPP PP APPPP
Sbjct: 1676 KLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPM-SVPPPPSAPPMPAGPPSAPPPP 1734
Query: 799 -XGXXAPXXP 773
AP P
Sbjct: 1735 LPASSAPSVP 1744
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,865
Number of Sequences: 5004
Number of extensions: 29125
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -