Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O13
         (1126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    32   0.17 
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   4.8  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    27   4.8  

>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -3

Query: 593 AXFXVLYDIHLNDQSTLGARFSSELPPTGPGFGSNPIASGTF*PLEVNTPNAFKGAS 423
           A F   YD+H    S   A +SS  PP     GS P++S T  P +  +   F  AS
Sbjct: 174 AEFSRAYDLHNAHPSIHDAPYSSPFPPPRIVLGSKPVSSSTL-PSKPKSFQVFSDAS 229


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 491 WNQNRDLLVEAPMKNGLLGLIDHSDEYHTERRXRPTM 601
           W QN  +L E+P +NG+   I  S++       +P++
Sbjct: 136 WQQNISVLSESPPQNGIQSYISSSEQAAQALTRKPSV 172


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 413 RLXLQR*DPRC*VPKLPRDHSIPGXLVN 330
           R+ L R  P C VP LP  H I   L+N
Sbjct: 111 RVQLSRLYPTCLVPPLPDKHKIMDYLIN 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,432
Number of Sequences: 5004
Number of extensions: 39944
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 597654600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)