Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O13
         (1126 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584...    30   3.9  
02_05_0600 - 30273080-30274692,30274709-30274949                       29   6.7  

>05_06_0189 +
           26257587-26257791,26257962-26258003,26258064-26258436,
           26258515-26258656,26259356-26259514,26259599-26259661,
           26259992-26260180
          Length = 390

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -1

Query: 178 GQXAAQDIGKEPRXQXSRGNKGDAEKHQXEMLWKRPDGRRDGXXSQAKMK-EGPXRGEXG 2
           G+  AQD  + PR     G +        E + +RP  R  G     +MK EG  RG  G
Sbjct: 139 GEEGAQDRERGPRPPFQGGGRRGGYGDDSERMSRRPYERHSGTGRGYEMKREGSGRGNWG 198


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +1

Query: 115 LCFLCSXXSGAPFQCPEQPXARXXSQTAGSPESTFGX---HRSQTCQWSSKYLRS*XWPV 285
           LC  C   + +P   P        + TAG   +  G    HR      +    R   WP+
Sbjct: 144 LCRRCWASTSSPTGLPSPQPTGVSAYTAGLYAAVVGRLRLHRPAASTAADWCFRLHGWPL 203

Query: 286 CRSCRADT 309
           CR C A T
Sbjct: 204 CRRCWAST 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,031,025
Number of Sequences: 37544
Number of extensions: 301548
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3398064036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)