Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O10
         (1145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    30   0.69 
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    27   3.7  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.9  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    27   6.5  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   6.5  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 378 VSEGRPCDNCPELCPGFVSHAWRKTCKSCGCDRLKHSVYHEELGSVRDRLGLRDSRVNHH 557
           +S  + CDNC    P F    + K  +       K+  + E+ G +R  + LRD+   HH
Sbjct: 222 ISSRKQCDNCQSFSPNFRKEGFAKIFEIPLSG--KNLQFMEQTGKIRSDV-LRDTSKKHH 278

Query: 558 SYDSPPG 578
             +   G
Sbjct: 279 EDEGYDG 285


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 433 ETNPGHSSGQLSQGLPSDTSFIRTPVSENA 344
           +T P H +   S  LPSD S I+TP ++ A
Sbjct: 41  QTLPIHQNQAFSNILPSDFSIIKTPETKTA 70


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 415 SSGQLSQGLPSDTSFIRTPVSENAPFGLLVGVPFILS 305
           S   L+  LP+  S+ ++    NA  GL++G+P ++S
Sbjct: 99  SDMSLAVALPTSASYTQSLGGTNAFSGLVIGIPTLIS 135


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 537 DSRVNHHSYDSPP-GLTAKQTELYWQSLAERT 629
           D +V+ H YD+PP GL   +T +Y   L   T
Sbjct: 163 DGKVSCHLYDAPPSGLVEGRTSMYTLLLQNTT 194


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 726 DHCKHIDEGHRKQYEDFVAARNEIALDIGIASQHHGSPLECIGCN 860
           D   H+ +  ++QY+   A R +I  ++G  S +  SP+  I  N
Sbjct: 15  DTASHVSDTRKRQYQRDEALRKKIISELGKKSGNFESPVRKIRRN 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,039,898
Number of Sequences: 5004
Number of extensions: 81158
Number of successful extensions: 248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 611599874
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)