Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_O08
(1324 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.022
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.067
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.088
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.47
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.4
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 7.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.022
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 913 PPPPPXXXXPPPPXXXXXPPXXXXKXPPPPP 821
PPP P PPPP PP PPPPP
Sbjct: 752 PPPAPIMGGPPPP---PPPPGVAGAGPPPPP 779
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = -1
Query: 913 PPPPPXXXXPPPPXXXXX--PPXXXXKXPPPPP 821
PPPPP P P PP PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 913 PPPPPXXXXPPPPXXXXXPPXXXXKXPPPPP 821
PPPPP PPP PP PPPPP
Sbjct: 761 PPPPP----PPPGVAGAGPPPP----PPPPP 783
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 578 PFXPPPPXXTXXSPPX*XKTPPPPP 504
P PPPP PP PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPP---PPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.067
Identities = 32/139 (23%), Positives = 36/139 (25%), Gaps = 1/139 (0%)
Frame = -3
Query: 911 PXPPXXXXXPPPXXXKXXPXXXXKXPPPXPXXKKXXXFSXXXPXXXPXXXPRXXXXGKXX 732
P PP PPP + P + PPP + P P G
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTG-RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNAS 410
Query: 731 XFXXPXXXXPXQXXXXFFFXFLXGXAPXXKTPXXXXXXXXXXFY-PXXPTXFPFXPPPPX 555
P P L AP P P P P PP P
Sbjct: 411 RTSTPPVPTPPS---------LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPA 461
Query: 554 XTXXSPPX*XKTPPPPPKP 498
+PP P PPP P
Sbjct: 462 GMPAAPPLPPAAPAPPPAP 480
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 910 PPPPXXXXPPPPXXXXXPPXXXXKXPPPPP 821
PPPP PP PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = -1
Query: 913 PPPPPXXXXPPPPXXXXXPPXXXXKXPPPPPXXKXXXXFP 794
PPPPP P PPPPP P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.088
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 910 PPPPXXXXPPPPXXXXXPPXXXXKXPPPPP 821
PPPP PPPP P PPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 30.3 bits (65), Expect = 0.62
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 913 PPPPPXXXXPPPPXXXXXPPXXXXKXPPPP 824
P PPP PPP P PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 30.3 bits (65), Expect = 0.62
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 912 PXPPPXXXXPPPXXXKXXPPXPXXXPPPXP 823
P PPP PPP P PPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 910 PPPPXXXXPPPPXXXXXPPXXXXKXPPPPP 821
PP PPPP PP P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.47
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 904 PPXXXXPPPPXXXXXPPXXXXKXPPPPP 821
PP PPPP PP + PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPP---SQPPPPPP 29
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 569 PPPPXXTXXSPPX*XKTPPPPPKP 498
PPPP PP PPPPP P
Sbjct: 10 PPPPPPPGFEPP---SQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 822 GGGGGXFXXXXGGXFXXXGGGGXXXXGGGGG 914
GGG G F GG GG G G GGG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 906 PPPXXXXPPPXXXKXXPPXPXXXPPP 829
PPP PP K PP P PPP
Sbjct: 150 PPPSPASAPPIPSKA-PPIPSSLPPP 174
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -1
Query: 913 PPPPPXXXXPPPPXXXXXPPXXXXKXPPPP 824
PPPPP PP PP + PP
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPP 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,834
Number of Sequences: 5004
Number of extensions: 23753
Number of successful extensions: 258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 725319970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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