Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O06
         (1210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.045
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   6.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.9 bits (74), Expect = 0.045
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = +3

Query: 744  PPPPRXXXKKXXPPXXGGGXPPXXKKKXXXXX-PPPGXXPPXGXPPXGXPP 893
            PP P+        P    G PP  K        PPP   PP   P  G PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/50 (28%), Positives = 15/50 (30%)
 Frame = +3

Query: 744  PPPPRXXXKKXXPPXXGGGXPPXXKKKXXXXXPPPGXXPPXGXPPXGXPP 893
            PP P+        P      P           PPP   PP   P  G PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/50 (26%), Positives = 14/50 (28%)
 Frame = +3

Query: 744  PPPPRXXXKKXXPPXXGGGXPPXXKKKXXXXXPPPGXXPPXGXPPXGXPP 893
            PP P+        P   G  P           P P   PP   P    PP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +3

Query: 744  PPPPRXXXKKXXPPXXGGGXPPXXKKKXXXXXPPPGXXPPXGXPPXGXPP 893
            PP P         P    G PP          P P    P   PP   PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 533 PXPXGGGXFXXGXXPPPPPPGXXKK 459
           P P   G       PPPPPPG  KK
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 840 PPPGXXPPXGXPPXGXPPPGXXKXXKXXXXXXPPXXG 950
           PPP   PP   PP   PPP      K      P   G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 360 PPFFXGXXPPPPXFFXFXGPPXPPXXG 280
           PP      PPPP F     PP PP  G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 491 PPPPPPGXXKKXXPP 447
           PPPPPPG      PP
Sbjct: 11  PPPPPPGFEPPSQPP 25


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +3

Query: 744 PPPPRXXXKKXXPPXXGGGXPPXXKKKXXXXXPPPGXXPPXGXPPXGXPPP 896
           PPPP         P      PP          PPP      G PP   PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 500 GXXPPPPPPGXXKKXXPP 447
           G  PPPPPPG      PP
Sbjct: 760 GPPPPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 840 PPPGXXPPXGXPPXGXPPPGXXKXXKXXXXXXPPXXGXXG 959
           PPP   P  G PP   PPPG            PP     G
Sbjct: 752 PPPA--PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 533 PXPXGGGXFXXGXXPPPPPP 474
           P P   G    G  PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
 Frame = +3

Query: 714  KXXGGGXXXKP-PPPRXXXKKXXPPXXGGGXPPXXKKKXXXXXPPPGXXPPXGXPPXGXP 890
            K  GG     P   P    +   PP      PP          PPP   P    PP   P
Sbjct: 1676 KLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVP---PPPSAPPMPAGPPSAPP 1732

Query: 891  PP 896
            PP
Sbjct: 1733 PP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
 Frame = +3

Query: 744 PPPPRXXXKKXXPPXXGGGX---------PPXXKKKXXXXXPPPGXXPPXGXPPXGXPPP 896
           PPPP     +  PP   G           PP          PP G   P   PP   P  
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 897 G 899
           G
Sbjct: 373 G 373


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 23/70 (32%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
 Frame = -1

Query: 895 GGGXPXGGXPXGGXXPGGGXXXXFFFFXXGGXPPPXXGGXXFF-XXXRGGGGFXXXPPPX 719
           GGG    G   GG  PG G    F  F   G      GG         GG G     P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 718 XFXGLGPFXG 689
              GLG F G
Sbjct: 247 FGGGLGGFGG 256


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
 Frame = -2

Query: 357 PFFXGXXPP-PPXFFXFXGPPXPPXXGDPXXXXFXXPXXP--PXGGAXXXG 214
           PF  G   P PP  F   G P PP  G P          P  P G A   G
Sbjct: 484 PFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPG 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.305    0.149    0.509 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,139
Number of Sequences: 5004
Number of extensions: 40434
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)