Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O05
         (1153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   217   2e-57
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   217   3e-57
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   2.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   6.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   8.6  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  217 bits (530), Expect = 2e-57
 Identities = 102/176 (57%), Positives = 123/176 (69%)
 Frame = +2

Query: 182 LRXFDLGQQRANVDDFPLCVHLVSDXXXXXXXXXXXXGRICCNKYLVKNCGKDQFHIRMR 361
           +R FDLG++RA VD+FPLC+HLVS+             RIC NKYLVK  GKD FH+R+R
Sbjct: 31  IRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVR 90

Query: 362 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE 541
            HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IE
Sbjct: 91  AHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIE 150

Query: 542 ALRRAKFKFPGRQKIYVSKKWGFTKYERDXFXXLXEXGRLXNXGXIVXXRPEXGXL 709
           ALRR ++KFPG+Q+I VSKKWGF++Y RD +      G +   G       + G L
Sbjct: 151 ALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  217 bits (529), Expect = 3e-57
 Identities = 102/176 (57%), Positives = 123/176 (69%)
 Frame = +2

Query: 182 LRXFDLGQQRANVDDFPLCVHLVSDXXXXXXXXXXXXGRICCNKYLVKNCGKDQFHIRMR 361
           +R FDLG++RA VD+FPLC+HLVS+             RIC NKYLVK  GKD FH+R+R
Sbjct: 31  IRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVR 90

Query: 362 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE 541
            HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IE
Sbjct: 91  AHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIE 150

Query: 542 ALRRAKFKFPGRQKIYVSKKWGFTKYERDXFXXLXEXGRLXNXGXIVXXRPEXGXL 709
           ALRR ++KFPG+Q+I VSKKWGF++Y RD +      G +   G       + G L
Sbjct: 151 ALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +2

Query: 362 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 529
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 530 QVIEALRRAKFKFPGRQKIYVSK 598
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 466  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 350
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 292  CLQSL*AQLFXFVGHQVHAQWKVVNVRXLLTQIEXTET 179
            CL  L   L   + H++ ++W+ +N R LL + +  ET
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEET 977


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,229
Number of Sequences: 5004
Number of extensions: 45304
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)