Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O04
         (1150 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.056
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.5 bits (73), Expect = 0.056
 Identities = 19/53 (35%), Positives = 19/53 (35%)
 Frame = +3

Query: 456 GGGGGGFXXXKKXPXPXGXGGXXXGXXPXSPXKXTGXPGXGGGXGXFPPXXGG 614
           GGG GGF      P P   G    G          G  G GGG G F    GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = +3

Query: 459 GGGGGFXXXKKXPXPXGXGGXXXGXXPXSPXKXTGXP-GXGGGXGXFPPXXGG 614
           GG GGF          G  G   G     P    G P G GGG G F    GG
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -3

Query: 914 GXXXXPPPPPGXXGXXFFFFPRXXXXGXPGGFXGG 810
           G    PPP PG  G    F       G  GGF GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 21/57 (36%), Positives = 21/57 (36%)
 Frame = +3

Query: 456 GGGGGGFXXXKKXPXPXGXGGXXXGXXPXSPXKXTGXPGXGGGXGXFPPXXGGXXXP 626
           GGG GGF        P G GG   G          G  G GGG G F    GG   P
Sbjct: 227 GGGPGGFEGG-----PGGFGGGPGGFGG-------GLGGFGGGPGGFGGGPGGHGGP 271


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 638 PPFXGXPXSPPXGXEXPXPPPXPRXPG 558
           PP    P  PP G E P  PP P  PG
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 29.9 bits (64), Expect = 0.70
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 529 PKXKPPXPXGXGXFXXXKXPPPPPPXXEKXXK 434
           P   PP P   G     + PPPPPP   K  K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 529 PKXKPPXPXGXGXFXXXKXPPPPPP 455
           P   PP P     F     PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 517 PPXPXGXGXFXXXKXPPPPPP 455
           PP P   G       PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -3

Query: 638 PPFX-GXPXSPPXGXEXPXPPPXP 570
           PP   G P +PP     P PPP P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAP 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,277
Number of Sequences: 5004
Number of extensions: 32003
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 613592056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)