Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O02
         (1285 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.53 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   4.9  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
 Frame = +3

Query: 1005 PXLXPPXP--PPXXXLPXXXPPXXPXXPXPXXPXLPP 1109
            P +  P P  PP   L    PP     P P  P  PP
Sbjct: 155  PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 804 PPXPXPXPXXXPPXLPPXXXXP 869
           PP P   P   PP  PP    P
Sbjct: 175 PPLPQVPPLPLPPIFPPTMINP 196



 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 960  PXPPXPPPPLPXSXXPXLXPP 1022
            P P  PP PLP    P +  P
Sbjct: 176  PLPQVPPLPLPPIFPPTMINP 196



 Score = 22.6 bits (46), Expect = 6.5
 Identities = 13/44 (29%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
 Frame = +1

Query: 1000 PXPXSXXPPP--PPXXXSXXXHPPPXPXXPXPXXPXXXPXXXPP 1125
            P P    P P  PP       +PP     P P  P   P    P
Sbjct: 153  PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 22.2 bits (45), Expect = 8.6
 Identities = 15/53 (28%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
 Frame = +3

Query: 1029 PPXXXLPXXXPPXXPXXPX-PXXPXLPPXXXXXXXXXPXPXPPSXLXPXPXPP 1184
            PP   L    P   P        P LPP         P P  P    P   PP
Sbjct: 139  PPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 960  PXPPXPPPPLPXSXXPXLXPP 1022
            P P  PP PLP    P +  P
Sbjct: 176  PLPQVPPLPLPPIFAPTMINP 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,805
Number of Sequences: 336
Number of extensions: 5451
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37816048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)