Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N22
         (1246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.062
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.11 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.062
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 1175 PXXXPPPPPKKXXXPPPXPXPPP 1107
            P   PPPPP     PP  P PPP
Sbjct: 6    PGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 30.3 bits (65), Expect = 0.58
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 1175 PXXXPPPPPKKXXXPPPXPXPPP 1107
            P   PPPPP      PP   PPP
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 1163 PPPPPKKXXXPPPXPXPPP 1107
            PPPPP     P   P PPP
Sbjct: 11   PPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 1161 PPPPXKXXXXPPPPXPPP 1108
            PPPP       PPP PPP
Sbjct: 13   PPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 1176 PXXXXPPPPXKXXXXPPPPXPP 1111
            P    PPP  +    PPPP PP
Sbjct: 9    PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 679 PXPPPXXFXPPXXPP 635
           P PPP  F PP  PP
Sbjct: 11  PPPPPPGFEPPSQPP 25


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 21/73 (28%), Positives = 22/73 (30%)
 Frame = -3

Query: 1163 PPPPPKKXXXPPPXPXPPPXXXXXXPXXXXPXXXKKXFFSXXGXXXKKXXPPXXXPPPXX 984
            PPPPP     P P P P P           P        +  G       PP   PPP  
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG-------PPPPPPPPPA 784

Query: 983  XKXGGXXXPPPPP 945
               GG     P P
Sbjct: 785  VSAGGSRYYAPAP 797



 Score = 32.7 bits (71), Expect = 0.11
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 1175 PXXXPPPPPKKXXXPPPXPXPPP 1107
            P   PPPP      PPP P PPP
Sbjct: 761  PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.5 bits (68), Expect = 0.25
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -2

Query: 1176 PXXXXPPPPXKXXXXPPPPXPPPXXXXXXPXXXXP 1072
            P     PPP      PPPP PPP      P    P
Sbjct: 746  PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 1010 PXXXPPPXXXKXGGXXXPPPPPXXGG 933
            P   PPP     GG   PPPPP   G
Sbjct: 748  PIPVPPPAPIM-GGPPPPPPPPGVAG 772



 Score = 23.8 bits (49), Expect(2) = 1.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 877 PPPPPPXXXGXXXP 836
           PPPPPP   G   P
Sbjct: 763 PPPPPPGVAGAGPP 776



 Score = 23.4 bits (48), Expect(2) = 1.4
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 883 KNPPPPPP 860
           K+PPPPPP
Sbjct: 730 KSPPPPPP 737


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 26/78 (33%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
 Frame = +1

Query: 934  PPXXGGGGGXXXPPFXXXXGGGXXXGGXXFXXXXPXXEKKXFFXXXGXXXXGXXXXXXGG 1113
            PP  GG GG     F    G G   GG       P   +       G    G      GG
Sbjct: 201  PPGPGGFGG-----FGGFGGEGHHHGGHGGFGGGPGGFE------GGPGGFGGGPGGFGG 249

Query: 1114 GX-GXGGGXXXFXGGGGG 1164
            G  G GGG   F GG GG
Sbjct: 250  GLGGFGGGPGGFGGGPGG 267



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 25/77 (32%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
 Frame = +1

Query: 949  GGGGXXXPPFXXXXGGGXXXGGXXFXXXXPXXEKKXFFXXXGXXXXGXXXXXXGGGXGX- 1125
            GGG    PP     GG    GG              F    G    G      GGG G  
Sbjct: 194  GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG----FGGGPGGFEGGPGGF--GGGPGGF 247

Query: 1126 GGGXXXFXGGGGGXXXG 1176
            GGG   F GG GG   G
Sbjct: 248  GGGLGGFGGGPGGFGGG 264


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 1176 PXXXXPPPPXKXXXXPPPPXPPP 1108
            P    P PP      PPPP  PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -3

Query: 1160 PPPPKKXXXPPPXPXPPPXXXXXXPXXXXP 1071
            PPPP     PPP   P P      P    P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,360
Number of Sequences: 5004
Number of extensions: 20885
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)