Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N21
         (1301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    40   6e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.15 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 41/161 (25%), Positives = 47/161 (29%), Gaps = 4/161 (2%)
 Frame = -2

Query: 727 PXPXPXGXXHXXXXXPXXPQGXXXPPPPXXRXXPPXXPXXPTXXLPXAPXXGGXXKXPPX 548
           P P P    +     P  PQG   PPPP  R  P      P   L  +         PP 
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP--PLSSSRAVSNPPAPPPA 394

Query: 547 LXXRSARXXXEKXXA----PPPPPXXGXREXKAXAXCXPPRXPXSVRXEXPAHPPPXHVX 380
           +  RSA        A     PP P        A     PP  P S+    PA PP     
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA-PPSLPPSAPPSLPMGAPAAPPLPPSA 453

Query: 379 XIFXXSXGGXAHNXPKXAXFXAPXXPPXXXXXXPPSTXXXL 257
            I      G     P      AP   P      P ++   L
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAEL 494



 Score = 32.7 bits (71), Expect = 0.11
 Identities = 27/98 (27%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
 Frame = -2

Query: 673 PQGXXXPPPPXXRXX-PPXXPXXPTXXLPXAPXXGGXXKXP---PXLXXRSARXXXEKXX 506
           P     PPP       PP  P  P   +   P      K P   P     +A     K  
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310

Query: 505 APPPPPXXGXREXKAXAXCXPPRXPXSVRXEXPAHPPP 392
            PPPPP       K      PP    S     P  PPP
Sbjct: 311 PPPPPPPSRRNRGK------PPIGNGSSNSSLPPPPPP 342


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 19/56 (33%), Positives = 19/56 (33%)
 Frame = -2

Query: 655 PPPPXXRXXPPXXPXXPTXXLPXAPXXGGXXKXPPXLXXRSARXXXEKXXAPPPPP 488
           PPPP      P     P    P AP  GG    PP      A         PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGA----GPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 672 PRGXXXPXPPXXGXXPPXXPRXPP 601
           P G   P PP  G  PP  P  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,428
Number of Sequences: 5004
Number of extensions: 25142
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)