Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N19
         (1181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    31   0.41 
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    28   2.2  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   5.1  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    27   6.7  
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    26   8.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   8.9  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    26   8.9  

>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 767 TSSTVVHHQFWIVNNVRIRHVLGFHEIFEHVGPVPSFSGD*G 642
           T++T V++    VN   ++HV+   EIF +  P+  F GD G
Sbjct: 172 TATTAVNNSTNYVNPAPLQHVMPNAEIFSNTPPLKRFRGDAG 213


>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 687 YFMKTEHMTDTNIVNNPELMVYHGRGGAIEVSGTNEVMFSIKKFLQAFEEL 839
           Y    EH  D + V      +Y  +   + V+ TNE++ S+ +F   F E+
Sbjct: 223 YQFSLEHSVDEDCVTKSLHTLYLFQKNKVSVANTNELLKSLVQFKSEFPEI 273


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 327 YDFIIVGAGTAGSALAARLSEVANFSVLLLEAGG 428
           +D++++G G+ G A A R ++     V L+EA G
Sbjct: 8   FDYLVIGGGSGGLASARRAAK-HGAKVALIEASG 40


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 336 IIVGAGTAGSALAARLSEVANFSVLLLEAGGDPPIE 443
           IIVGAG  G + A  L++   +++ +L+    P I+
Sbjct: 8   IIVGAGVFGLSAALELTKRGGYTIKILDRAPPPVID 43


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 375 ARLSEVANFSVLLLEAGGDPPIEAI 449
           A L+  A    LLLEAGGDP I+ I
Sbjct: 78  AALNGHAEICKLLLEAGGDPHIKNI 102


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 435 VDLRPPPVGVR*SWQPRRVWRRAQSQ 358
           VD+ PP V    S+  RR WRR++SQ
Sbjct: 323 VDVDPPIVEEHSSFFRRRRWRRSRSQ 348


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 23/80 (28%), Positives = 32/80 (40%)
 Frame = +2

Query: 434 TDRGYYTSVQRNSKSKFGRLEFYQRGKQYYKPSLKKRNRATTSREDAGWKRLLESHGLCQ 613
           TD      + RNS +    L+ YQR KQ      +K   +TTS +    K  L S  + Q
Sbjct: 5   TDADEIHEILRNSTTGLVHLKDYQRVKQNIVEKREKHALSTTSTKIKKRKDAL-SKKVKQ 63

Query: 614 GFSFRLPRMGLNRRRNLELD 673
           G      ++       LE D
Sbjct: 64  GIKVNKGKLSFGEDEELEND 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,486,520
Number of Sequences: 5004
Number of extensions: 95617
Number of successful extensions: 257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)