Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_N19
(1181 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 89 4e-17
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 66 2e-10
BC014483-1|AAH14483.1| 468|Homo sapiens coenzyme Q6 homolog, mo... 33 2.0
BC014181-1|AAH14181.1| 468|Homo sapiens coenzyme Q6 homolog, mo... 33 2.0
AK222965-1|BAD96685.1| 468|Homo sapiens CGI-10 protein isoform ... 33 2.0
X53778-1|CAA37794.1| 331|Homo sapiens uracil DNA glycosylase pr... 32 4.7
AF132944-1|AAD27719.1| 468|Homo sapiens CGI-10 protein protein. 31 8.1
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 88.6 bits (210), Expect = 4e-17
Identities = 70/223 (31%), Positives = 99/223 (44%), Gaps = 8/223 (3%)
Frame = +3
Query: 312 QNGSRYDFIIVGAGTAGSALAARLSEVANFSVLLLEAG------GDPPIEAIIPAFRETL 473
++ Y +++VGAG+AG LA RL+E VLLLEAG G + I L
Sbjct: 36 ESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVRAGSKRLSWKIH-MPAAL 94
Query: 474 KASSVDWNFTSVENNITSQALKRGIEQQPRGKMLGGSGSLNHMVYARGFPSDYHEWASIA 653
A+ D + + + L + PRG++ GGS SLN MVY RG DY W
Sbjct: 95 VANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQG 154
Query: 654 GETWNWTNVLKYFMKTEHMTDTNIVNNPELMVYHGRGGAIEVS--GTNEVMFSIKKFLQA 827
W++ + L YF K + + Y G G + VS TN + FL+A
Sbjct: 155 ARGWDYAHCLPYFRKAQG-------HELGASRYRGADGPLRVSRGKTNHPLHC--AFLEA 205
Query: 828 FEELGFKTVPDMTYPNSIGAGCFSHTIRNGERDSSLRALLNNA 956
++ G+ DM G G TI G+R S+ A L+ A
Sbjct: 206 TQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPA 248
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 66.5 bits (155), Expect = 2e-10
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Frame = +3
Query: 558 PRGKMLGGSGSLNHMVYARGFPSDYHEWASIAGETWNWTNVLKYFMKTEHMTDTNIVNNP 737
PRG++ GGS SLN MVY RG DY W W++ + L YF K + +
Sbjct: 11 PRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQG-------HEL 63
Query: 738 ELMVYHGRGGAIEVS--GTNEVMFSIKKFLQAFEELGFKTVPDMTYPNSIGAGCFSHTIR 911
Y G G + VS TN + FL+A ++ G+ DM G G TI
Sbjct: 64 GASRYRGADGPLRVSRGKTNHPLHC--AFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIH 121
Query: 912 NGERDSSLRALLNNA 956
G+R S+ A L+ A
Sbjct: 122 EGKRWSAACAYLHPA 136
>BC014483-1|AAH14483.1| 468|Homo sapiens coenzyme Q6 homolog,
monooxygenase (S. cerevisiae) protein.
Length = 468
Score = 33.1 bits (72), Expect = 2.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 288 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 458
+W + S + YD ++ G G G+A+A L +F +LLLEAG +E +
Sbjct: 23 SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82
Query: 459 FRETLKASS 485
+ + + S
Sbjct: 83 YSNRVSSIS 91
>BC014181-1|AAH14181.1| 468|Homo sapiens coenzyme Q6 homolog,
monooxygenase (S. cerevisiae) protein.
Length = 468
Score = 33.1 bits (72), Expect = 2.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 288 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 458
+W + S + YD ++ G G G+A+A L +F +LLLEAG +E +
Sbjct: 23 SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82
Query: 459 FRETLKASS 485
+ + + S
Sbjct: 83 YSNRVSSIS 91
>AK222965-1|BAD96685.1| 468|Homo sapiens CGI-10 protein isoform a
variant protein.
Length = 468
Score = 33.1 bits (72), Expect = 2.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 288 TWPKDSVLQNGSRYDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPA 458
+W + S + YD ++ G G G+A+A L +F +LLLEAG +E +
Sbjct: 23 SWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSET 82
Query: 459 FRETLKASS 485
+ + + S
Sbjct: 83 YSNRVSSIS 91
>X53778-1|CAA37794.1| 331|Homo sapiens uracil DNA glycosylase
protein.
Length = 331
Score = 31.9 bits (69), Expect = 4.7
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Frame = +3
Query: 348 AGTAGSALAARLSEVANFSVLLLEAGGD--PPIEAIIP--AFR-ETLKASSVDWNFTSVE 512
+G G +AA LS ++ +L L+A G P + + AFR T S VD +E
Sbjct: 192 SGNCG-VMAAGLSRTSSLPLLALKAVGKVIPELNGKLTGMAFRVPTANVSVVDLT-CRLE 249
Query: 513 NNITSQALKRGIEQQPRGKMLGGSGSLNHMVYARGFPSDYHEWASIAG 656
+K+ ++Q G + G G H V + F SD H AG
Sbjct: 250 KPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAG 297
>AF132944-1|AAD27719.1| 468|Homo sapiens CGI-10 protein protein.
Length = 468
Score = 31.1 bits (67), Expect = 8.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 327 YDFIIVGAGTAGSALAARLSEVANF---SVLLLEAGGDPPIEAIIPAFRETLKASS 485
YD ++ G G G+A+A L +F +LLLEAG +E + + + + S
Sbjct: 36 YDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSETYSNRVSSIS 91
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,996,912
Number of Sequences: 237096
Number of extensions: 3668819
Number of successful extensions: 9480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9470
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16568915230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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