Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N16
         (1179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = -2

Query: 848 PFXPLXGXXTPPPPPXXXGXGFFXGGXXRXPKXXPPXPXGGGXFF 714
           P  P+ G   PPPPP     G    G    P   P    GG  ++
Sbjct: 753 PPAPIMGGPPPPPPPP----GVAGAGPPPPPPPPPAVSAGGSRYY 793


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
 Frame = -1

Query: 1146 PPPSPGGXXG-GXF--FXFXXXGXXXXGGPRGXFXGG 1045
            PPP PGG  G G F        G    GG  G F GG
Sbjct: 200  PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.151    0.504 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,461
Number of Sequences: 5004
Number of extensions: 25699
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)