Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_N15
(1226 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.046
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.33
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.00
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 28 3.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 9.3
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 9.3
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.046
Identities = 27/79 (34%), Positives = 28/79 (35%)
Frame = -1
Query: 1160 GGGXXGFXXGGGXPXKGXXFFXKXGXGGPPXXXXFGGXXXXXXGFGKXGXXXGFFPRGGX 981
GGG GF G G P G F G GG FGG G G G G F G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGF--GGFGG------FGGEGHHHGGHGGFGGGPGGFEGGPG 238
Query: 980 XLXFXPGXXPXPVGFPXGG 924
PG +G GG
Sbjct: 239 GFGGGPGGFGGGLGGFGGG 257
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Frame = +2
Query: 1070 GGGPPXPXSKKXGXPFXGPPPXXKTPXXPPPXXXXXPP--XPXKKKXPPXXP 1219
G P P S P PP P PPP PP P PP P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 1125 PPPXXKPRXPPPQXXXXPPXXPXKKXPPL 1211
PPP PPP P P PPL
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 1.00
Identities = 25/92 (27%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Frame = +3
Query: 939 PNXXGXXPRXKXQXXPPP-GEKXXXXPXFXKPXVXXXGXXKXXXXGGAPPPRLXKKXXPL 1115
P G P K PP P KP G APP + K +
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA---GVPPVPPPSEAPP--VPKPSVGV 1207
Query: 1116 XGXPPPXXKPRXPPPQXXXXPPXXPXKKXPPL 1211
PPP P P P P P K PP+
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239
Score = 28.7 bits (61), Expect = 1.7
Identities = 24/86 (27%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Frame = +1
Query: 940 PTGXGXXPGXXXXFXPPRGKXPXLXPXXPNPXXFXXXPPKXXXXGGPPXPX--FXKKXXP 1113
P G P PP K P P P PP G PP P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSV--AVPPVPAPSGAPPVPKPSVAAPPVP 1134
Query: 1114 FXGXPPPKXNP---XXPPPKXXGXPP 1182
PP P P P G PP
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 26.6 bits (56), Expect = 7.0
Identities = 22/84 (26%), Positives = 24/84 (28%)
Frame = +3
Query: 960 PRXKXQXXPPPGEKXXXXPXFXKPXVXXXGXXKXXXXGGAPPPRLXKKXXPLXGXPPPXX 1139
P K PP P KP V GAPP + K P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSV---AAPPVPVPSGAPP--VPKPSVAAPPVPAPSG 1157
Query: 1140 KPRXPPPQXXXXPPXXPXKKXPPL 1211
P P P P P PP+
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPV 1181
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +1
Query: 385 GRXXXGXGXGXPPGKGGXPXGXPXGSXXRXPXPPPXXXXXXAPPPPRGXXRXPPKXG 555
G G G P G+G P G P APPPP G R P G
Sbjct: 92 GSLLSGPGVARPAGRG-----IPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPG 143
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Frame = +2
Query: 1079 PPXPXSKKXGXPFXGPPPXX-----KTPXXPPPXXXXXPPXPXKKKXPP 1210
PP P SK P PPP K+P P PP P K PP
Sbjct: 158 PPIP-SKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 26.2 bits (55), Expect = 9.3
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 1079 PPXPXSKKXGXPFXGPPPXXKTPXXPPPXXXXXPPXPXKKKXPP 1210
PP P S+ P PP P PPP PP P K PP
Sbjct: 130 PPTPQSELR-PPTSAPP----RPSIPPPSPASAPPIP--SKAPP 166
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 9.3
Identities = 20/91 (21%), Positives = 25/91 (27%), Gaps = 3/91 (3%)
Frame = +3
Query: 960 PRXKXQXXPPPGE---KXXXXPXFXKPXVXXXGXXKXXXXGGAPPPRLXKKXXPLXGXPP 1130
P + + PP G P P G G + PP + P G P
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376
Query: 1131 PXXKPRXPPPQXXXXPPXXPXKKXPPLXXXG 1223
P PP P + P L G
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLG 407
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 9.3
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = -2
Query: 1210 RGGFFFXGXXGGXXXXWGGGXRGFXXGGGXPKRGSXFFXXRGG 1082
RGGF G GG +GG RG GG RG RGG
Sbjct: 140 RGGF--RGGRGGSRGGFGGNSRGGFGGG---SRGGFGGGSRGG 177
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 9.3
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 1077 APPPRLXKKXXPLXGXPPPXXKPRXPPPQXXXXPPXXPXKKXPPLXXXG 1223
AP P P+ G PPP P PP PP P PP G
Sbjct: 745 APAPIPVPPPAPIMGGPPP---PPPPPGVAGAGPP--PPPPPPPAVSAG 788
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.150 0.529
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,483
Number of Sequences: 5004
Number of extensions: 33975
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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