Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N15
         (1226 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 1071 GGAPPPRLXKKXXPLXGXPPPXXKPRXPPPQ 1163
            GG  P  + +   P+   P P  + R  PPQ
Sbjct: 971  GGCQPGGVVQSQQPIMTDPSPFKRGRYTPPQ 1001



 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 461  EPXGXPXGXPPXPGGXPXPXPXXXLPHLP 375
            +P   P G P  P G   P     +PHLP
Sbjct: 1130 KPFTSPGGIP-GPNGIKMPSFMEGMPHLP 1157


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = +3

Query: 1110 PLXGXPPPXXKPRXPPPQXXXXPPXXPXKKXPP 1208
            P  G P P   P   P       P  P +  PP
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 1129 PPKXNPXXPPPKXXG 1173
            PPK  P  PPP   G
Sbjct: 338  PPKPAPPPPPPSSSG 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.150    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,703
Number of Sequences: 438
Number of extensions: 8105
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)