Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N12
         (1149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    27   3.7  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   8.6  

>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
 Frame = +3

Query: 81  ELYKNITKLTSRYQKN*EMFRNVLLPLRRGSFQVTSIRQAQKKYPKADKKVQAAAESLAA 260
           E  +N    +++   N E      LP+     ++ ++ Q  KKYPKA+       +++  
Sbjct: 122 EAIQNRVDYSTKQNYNFEYVNVTGLPIPAVWSKMPAVLQTMKKYPKAEWIWLLDQDAIIT 181

Query: 261 RGFLRPTKSWDPPTNINETIL--KICATCGLNGNSEFEALDTKFTV 392
              L    S+  P N+ +T++   I     +N N +     + +++
Sbjct: 182 NTHLSLQDSFLKPENLQKTLITNTILTKRPINANGDLRYTPSNYSL 227


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +3

Query: 528 MDLPKNLHVQKDYVRFHPDTDTLFNGVSAFPKSSTIVTGLKARKKYEGYNAKRKWP*FNT 707
           +DLP    V  + + +  +   L NG+   PKS   V  LK ++     N    W  F++
Sbjct: 109 IDLPFVSQVAHNILVWLENLIPLSNGMDDTPKSHLKVKILKVQETLSNSNDSWLWQRFSS 168

Query: 708 CFQ*LLNYLVHVIN 749
               LLN LV  IN
Sbjct: 169 L---LLNCLVSSIN 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,643,336
Number of Sequences: 5004
Number of extensions: 71811
Number of successful extensions: 202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 613592056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)