Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N12
         (1149 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL353621-1|CAI14610.1|  158|Homo sapiens mitochondrial ribosomal...    52   3e-06
AK025643-1|BAB15200.1|  158|Homo sapiens protein ( Homo sapiens ...    52   3e-06
AK000500-1|BAA91207.1|  158|Homo sapiens protein ( Homo sapiens ...    52   3e-06
BC032008-1|AAH32008.1|  158|Homo sapiens mitochondrial ribosomal...    52   4e-06

>AL353621-1|CAI14610.1|  158|Homo sapiens mitochondrial ribosomal
           protein L50 protein.
          Length = 158

 Score = 52.4 bits (120), Expect = 3e-06
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
 Frame = +3

Query: 192 RQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGLNGNSE 362
           R  ++K P   + V+   E +     LR ++++ PP ++    E+ +K      L  N +
Sbjct: 29  RFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSLPSNWQ 87

Query: 363 FEALDT---KFTVLKACYEETGHSVPNSLXHTIETVDDLTEFYKTPVYTTTPFDALKLMD 533
             +L+    KF +L    ++ GH VPNS  H +  V D+ +FY  P+   + FD L   +
Sbjct: 88  DISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDELSASN 147

Query: 534 LPKNLHVQKDY 566
           LP NL +   Y
Sbjct: 148 LPPNLKITWSY 158


>AK025643-1|BAB15200.1|  158|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21990 fis, clone HEP06386. ).
          Length = 158

 Score = 52.4 bits (120), Expect = 3e-06
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
 Frame = +3

Query: 192 RQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGLNGNSE 362
           R  ++K P   + V+   E +     LR ++++ PP ++    E+ +K      L  N +
Sbjct: 29  RFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSLPSNWQ 87

Query: 363 FEALDT---KFTVLKACYEETGHSVPNSLXHTIETVDDLTEFYKTPVYTTTPFDALKLMD 533
             +L+    KF +L    ++ GH VPNS  H +  V D+ +FY  P+   + FD L   +
Sbjct: 88  DISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDELSASN 147

Query: 534 LPKNLHVQKDY 566
           LP NL +   Y
Sbjct: 148 LPPNLKITWSY 158


>AK000500-1|BAA91207.1|  158|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20493 fis, clone KAT08512. ).
          Length = 158

 Score = 52.4 bits (120), Expect = 3e-06
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
 Frame = +3

Query: 192 RQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGLNGNSE 362
           R  ++K P   + V+   E +     LR ++++ PP ++    E+ +K      L  N +
Sbjct: 29  RFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSLPSNWQ 87

Query: 363 FEALDT---KFTVLKACYEETGHSVPNSLXHTIETVDDLTEFYKTPVYTTTPFDALKLMD 533
             +L+    KF +L    ++ GH VPNS  H +  V D+ +FY  P+   + FD L   +
Sbjct: 88  DISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDELSASN 147

Query: 534 LPKNLHVQKDY 566
           LP NL +   Y
Sbjct: 148 LPPNLKITWSY 158


>BC032008-1|AAH32008.1|  158|Homo sapiens mitochondrial ribosomal
           protein L50 protein.
          Length = 158

 Score = 52.0 bits (119), Expect = 4e-06
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
 Frame = +3

Query: 192 RQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGLNGNSE 362
           R  ++K P   + V+   E +     LR ++++ PP ++    E+ +K      L  N +
Sbjct: 29  RFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSLPSNWQ 87

Query: 363 FEALDT---KFTVLKACYEETGHSVPNSLXHTIETVDDLTEFYKTPVYTTTPFDALKLMD 533
             +L+    KF +L    ++ GH VPNS  H +  V D+ +FY  P+   + FD L   +
Sbjct: 88  DISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVFDFYNVPIQDRSKFDELSASN 147

Query: 534 LPKNLHVQKDY 566
           LP NL +   Y
Sbjct: 148 LPPNLKITWSY 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,600,400
Number of Sequences: 237096
Number of extensions: 2606076
Number of successful extensions: 3807
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3792
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 15963406700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)