Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N07
         (1163 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7PDS6 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    35   4.6  
UniRef50_Q23D67 Cluster: Putative uncharacterized protein; n=1; ...    35   4.6  

>UniRef50_Q7PDS6 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=5;
           Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
           PFEMP3 - Plasmodium yoelii yoelii
          Length = 1140

 Score = 34.7 bits (76), Expect = 4.6
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = -1

Query: 806 TN*NLQNNRIPQPPKASLKKYIIVTGTFAPY*HRNNLKI 690
           TN NL NN IP PP + LKK +I+     PY + NNL +
Sbjct: 536 TNKNLMNN-IPPPPDSDLKKNMIMPPNAPPY-NENNLTV 572


>UniRef50_Q23D67 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 516

 Score = 34.7 bits (76), Expect = 4.6
 Identities = 24/84 (28%), Positives = 42/84 (50%)
 Frame = -2

Query: 460 NMEIYLQINSNHHTNLAQPHIGSKDTESSERRYTPIF*XLKRSLITYYYFFVLNIRVKTI 281
           N   Y  I ++HH+N  +     + TES + +   +    + S I  Y+F +  +R + +
Sbjct: 203 NHHQYADIFNDHHSNPLE----IQSTESIQTQIKQLT-CARISSILIYFFLLYFMRNQNM 257

Query: 280 FYFFIRTK*NLIYHFYI*LKSKQV 209
            + F+ T   LI  FYI +K KQ+
Sbjct: 258 IFIFVATIILLIIQFYIHIKKKQL 281


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,958,519
Number of Sequences: 1657284
Number of extensions: 13631482
Number of successful extensions: 20336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20322
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 115879302255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)