Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_N04
(1137 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 242 5e-65
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 33 0.074
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 0.91
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 1.6
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 29 1.6
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 3.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.7
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 27 6.4
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 27 6.4
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 27 6.4
SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit... 27 6.4
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 242 bits (593), Expect = 5e-65
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 15/316 (4%)
Frame = +3
Query: 147 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML- 323
K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D ELLQAK ++L TNM DYV ++ L
Sbjct: 14 KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73
Query: 324 --YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 497
+ +ED ++R VL EL EL++ V+ +L +++ D++ + +D + HL
Sbjct: 74 GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130
Query: 498 TNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASE 677
+ Y E I +Y+ A+++Y CGNY ++ LY + + N S WGK ASE
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASE 188
Query: 678 ILVQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLII 857
IL +WDGA+++L KLRE +D+ +A L+ RTWL+HWSLF FNH G D +
Sbjct: 189 ILTVDWDGAMEELGKLREMVDSKSFKDSAVQ---LRNRTWLLHWSLFPLFNHANGCDTLC 245
Query: 858 EMFLYKPLYLNAIQTMCPHILRYXATAVIINRSRXN------------ALKDLVKVXXQE 1001
++F Y P YLN IQT CP +LRY AV+ N++ N ++DLV++ QE
Sbjct: 246 DLFFYTP-YLNTIQTSCPWLLRYLTVAVVTNQNNANQKPRNPRQSYQRRMRDLVRIISQE 304
Query: 1002 AYXYRDPITEFXEHLY 1049
Y Y DP+T F LY
Sbjct: 305 NYEYSDPVTSFISALY 320
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 33.1 bits (72), Expect = 0.074
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -2
Query: 647 QIILVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRI 468
Q++ V W+HHQ C I + F IFGQ I AID ++ KL + + +SF
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAKLYKISQQIENARSFDY 384
Query: 467 P 465
P
Sbjct: 385 P 385
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.5 bits (63), Expect = 0.91
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 450 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 581
T+ T+ D ++ HL+ +F + ++M++ ++YRY N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 162 FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 281
F I +YL +L+ P LEF L A E Q + A ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = -2
Query: 572 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 411
TF+ +G I+ D +N L +VY ++ + F+ + ++S+++SQ W
Sbjct: 83 TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 261 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDD 440
K+ + S N I Y + +L P+E ++ RG+ + Q +++ E VL+
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247
Query: 441 VMK 449
V K
Sbjct: 248 VCK 250
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 435 DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 557
+DV+K + T+ PK +I L ++ +EF I+ ID ++ +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 764 GSGTGSTVIDELSKFG*IIERAIP 693
GSGTGSTV L+ F + R +P
Sbjct: 272 GSGTGSTVFQVLNAFSKAVGRDLP 295
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -1
Query: 702 RHPNFVPKFR*PIYP-KEPTNNSCQLATSPVDKSKDMM 592
R FVP P P K P L +P+DK +DMM
Sbjct: 162 RTKKFVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 6.4
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +3
Query: 684 VQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEM 863
V +D AL K+RE+ N G + S ++ ++ W+ ++S + F + M
Sbjct: 125 VGQFDSALRSYAKVREYCTNAGQIAHLS-LELMRISIWIGNYSHVLAFGSRAKSTVSAAM 183
Query: 864 FLYKPLY 884
L P+Y
Sbjct: 184 ELTSPIY 190
>SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit
Rpb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 135
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 666 LASEILVQNWDGALDDLTKLREFID 740
LA++I QN G LD+L+ LR+F D
Sbjct: 111 LANKIDDQNLQGILDELSTLRKFQD 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,154,254
Number of Sequences: 5004
Number of extensions: 86221
Number of successful extensions: 238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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