Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_N04
(1137 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 285 4e-77
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 241 7e-64
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 181 1e-45
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 31 1.7
07_03_1700 - 28810239-28810870,28811304-28812594 30 3.9
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 29 6.8
>07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 285 bits (699), Expect = 4e-77
Identities = 135/303 (44%), Positives = 211/303 (69%)
Frame = +3
Query: 144 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 323
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS TNM+DY DI + L
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHKSL 61
Query: 324 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTN 503
+ ++ P+++++RR V+S L+ L +A P++ +Q + ++ +R K H+ +
Sbjct: 62 HDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQL---VQELRPDKQYNLHMLQD 118
Query: 504 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 683
+ ++ E I+++Y+ AK++++CGNY ++A YLY + + + ++++ LS LWGKLA+EIL
Sbjct: 119 R-FQIGPEQIETLYQFAKFQFDCGNYSDAAVYLYQYRALCTNSERS-LSALWGKLAAEIL 176
Query: 684 VQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEM 863
+QNWD ALD+L +L+E ID + + +S + LQ R WL+HWS+F+FFNH GR+ II++
Sbjct: 177 MQNWDVALDELNRLKEIID---SKNFSSPLNQLQNRIWLMHWSIFIFFNHENGRNGIIDL 233
Query: 864 FLYKPLYLNAIQTMCPHILRYXATAVIINRSRXNALKDLVKVXXQEAYXYRDPITEFXEH 1043
F ++ YLNAIQT PH+LRY ATAV++N+ R N LK+L+KV QE + Y+DPITEF E
Sbjct: 234 F-FQDRYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPITEFLEC 292
Query: 1044 LYV 1052
LYV
Sbjct: 293 LYV 295
>07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 241 bits (590), Expect = 7e-64
Identities = 125/303 (41%), Positives = 193/303 (63%)
Frame = +3
Query: 144 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 323
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L TNM+DY DI +
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKSR 61
Query: 324 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTN 503
Y +D PE++++RR E V RL + + I +
Sbjct: 62 YGTDDVPEDMVKRRA-------------EVVSRLTSLGEAIDNI---------------H 93
Query: 504 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 683
+ + + I+++Y+ AK++++CGNY +A YL+ + + + +++ LS LWGKLA+EIL
Sbjct: 94 QNQQIGPDQIETLYQYAKFQFDCGNYSFAAQYLHQYRALCTNIERS-LSALWGKLAAEIL 152
Query: 684 VQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLIIEM 863
+QNWD AL++L +L+E ID+ + +S + LQ R WL+HWS+F+F+NH GR+ II++
Sbjct: 153 MQNWDVALEELNRLKEIIDSK---NFSSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDL 209
Query: 864 FLYKPLYLNAIQTMCPHILRYXATAVIINRSRXNALKDLVKVXXQEAYXYRDPITEFXEH 1043
F ++ YLNAIQT PH+LRY ATAV++N+ R N LK+L+KV QE + Y+DPITEF E
Sbjct: 210 F-FQERYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPITEFLEC 268
Query: 1044 LYV 1052
L+V
Sbjct: 269 LFV 271
>07_03_0517 + 19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 181 bits (440), Expect = 1e-45
Identities = 111/312 (35%), Positives = 180/312 (57%), Gaps = 9/312 (2%)
Frame = +3
Query: 144 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSK-TNMIDYVTDIR 314
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + TNM+DY D
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61
Query: 315 RMLYPEED------TPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK 476
++L+ + D P+++++RR V++ L L P++ ++ + P
Sbjct: 62 KLLHGDTDDDVVVPVPDDMVERRHEVVTRLGALAAPAAPIVSALKNHHL--------GPD 113
Query: 477 TLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVL 656
N ++ ++ + I+++Y+ AK++++CGNY ++A L+ + + + ++++ LS
Sbjct: 114 KEHNIRMLHERFQIGPDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERS-LSAQ 172
Query: 657 WGKLASEILVQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHV 836
WGKL++EIL NWD AL++L L+E ID+ N Q L Q +++S+ F +
Sbjct: 173 WGKLSAEILNNNWDVALEELNCLKEMIDSKQCFVCHINYQILSQ----LNFSICAF--RL 226
Query: 837 KGRDLIIEMFLYKPLYLNAIQTMCPHILRYXATAVIINRSRXNALKDLVKVXXQEAYXYR 1016
R YLNAIQT PH+LRY A A+++NR R N LK+LVKV QE + Y+
Sbjct: 227 PSR------------YLNAIQTDAPHLLRYLAAAIVVNRRRRNMLKELVKVIQQEQHSYK 274
Query: 1017 DPITEFXEHLYV 1052
DPITEF E LYV
Sbjct: 275 DPITEFLECLYV 286
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 31.1 bits (67), Expect = 1.7
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 234 YDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 413
YD + + +T D D L P+EDT E ++RRGV L+E + +AV+
Sbjct: 363 YDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKRRGVPLTERECSTNAVDI 422
Query: 414 V 416
V
Sbjct: 423 V 423
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 29.9 bits (64), Expect = 3.9
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Frame = +3
Query: 231 TYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVE 410
T+D +LL+A E+L K + Y T + +L ED +++R V++ +E + +E
Sbjct: 336 TFDLEDLLRASAEVLGKGS---YGTAYKAIL---EDGTVVVVKRLKDVVAGKKEFEQQME 389
Query: 411 PVLRLMQRDDV--MKTIETMRDPKTLINHLSTNKEYEFKIEMI 533
+ RL + ++ ++ +D K ++ TN + K+ I
Sbjct: 390 LIGRLGKHANLVPLRAYYYSKDEKLIVYDYLTNGSFSTKLHGI 432
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 264 LEILSKTNMIDY---VTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL 419
+EIL ++ +++ V I ++LY ED P + + + ++ + Q Q + P+L
Sbjct: 225 VEILCQSPEVEHLPIVNAIHKVLYAAEDDPSMVAEAQAMISQQQQSEQPMLSPIL 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,632,538
Number of Sequences: 37544
Number of extensions: 540880
Number of successful extensions: 1363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3444772820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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