Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_N04
(1137 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 257 9e-69
Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical pr... 33 0.49
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 31 1.5
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 2.6
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 29 8.1
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 29 8.1
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 257 bits (630), Expect = 9e-69
Identities = 127/307 (41%), Positives = 200/307 (65%), Gaps = 4/307 (1%)
Frame = +3
Query: 144 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 323
S FDLT ++ +LD HL+ PLLEF+ + YD+ L + ++L+KTNMID V +
Sbjct: 2 STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIET---- 57
Query: 324 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK---TLINHL 494
Y + P I ++ ++ E EL+ V+ V+ +++ +V + ++ R+ ++ HL
Sbjct: 58 YNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHL 117
Query: 495 STNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLAS 674
+ N + F ++M+D++++ +K+ YECGNY ++ LY+ + +++ D NYL+ L+GKLAS
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLAS 175
Query: 675 EILVQNWDGALDDLTKLREFIDNGGAGSTASNMQALQQRTWLVHWSLFVFFNHVKGRDLI 854
EIL+Q W+ A DDL KLR +ID A + + + QR WL+HW+LFV++N+ KGRD I
Sbjct: 176 EILLQEWEHARDDLLKLRAYID---ANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEI 232
Query: 855 IEMFLYKPLYLNAIQTMCPHILRYXATAVIINRSR-XNALKDLVKVXXQEAYXYRDPITE 1031
IEMFL + YLNAIQ + PH+LRY A AV+ ++SR N+LKDLVKV E + Y+DP+T+
Sbjct: 233 IEMFLNQQPYLNAIQVLAPHLLRYLAVAVVTSKSRQKNSLKDLVKVIDIERHSYKDPVTD 292
Query: 1032 FXEHLYV 1052
F LY+
Sbjct: 293 FLTCLYI 299
>Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical
protein T16H12.2 protein.
Length = 181
Score = 32.7 bits (71), Expect = 0.49
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 261 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 413
K I+ +T +V + +LYP++DTP +I++ R L Q+ +D EP
Sbjct: 110 KHHIVCRTCQQSHVKAVCPILYPKKDTPPKILRARRRSLIRAQKKKDFQEP 160
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = -2
Query: 536 IDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWLYCILKFLQFRKNYTSPL 357
++H + K I C + V ++ H F +++++ + S+Y + I+ LQ+ TS
Sbjct: 2727 VEHHDLKRIKSACVQSVRRAVAFSHAFRVWNWLLRMVSSEYSVSDII--LQYLTTLTS-- 2782
Query: 356 YNFFRSVFFRIEHSSDV 306
YN F + +S++
Sbjct: 2783 YNRLAEYMFSAKKNSNI 2799
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 2.6
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 867 LYKPLYLNAIQTMCPHILRYXATAVIINRSRXNALKDLVKVXXQEAYXYRDPITEFXEHL 1046
+YK YL + CPHI+R A A ++ + L L++ E Y D F + L
Sbjct: 116 VYKKEYLADLMD-CPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDIL 174
Query: 1047 YV 1052
++
Sbjct: 175 FI 176
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 180 LDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTP 344
L R ++ L EF +TY E L+AKLE + + + ++ PE+D+P
Sbjct: 408 LRRPVILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSP 462
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 28.7 bits (61), Expect = 8.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +3
Query: 504 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 683
K Y+ + ID ++RLAK+ E GN VE +++ K Y + W ++ L
Sbjct: 130 KRYDAGEKSIDVLWRLAKFCNEIGNRVEKDKRK---DIIVE--GKKYATEAWNTDSNNFL 184
Query: 684 VQNW----DGALDDLTKLREFIDNG 746
W G + + +E I+ G
Sbjct: 185 AARWAALMSGKVTEYLGTKEKIEEG 209
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 28.7 bits (61), Expect = 8.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +3
Query: 504 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 683
K Y+ + ID ++RLAK+ E GN VE +++ K Y + W ++ L
Sbjct: 71 KRYDAGEKSIDVLWRLAKFCNEIGNRVEKDKRK---DIIVE--GKKYATEAWNTDSNNFL 125
Query: 684 VQNW----DGALDDLTKLREFIDNG 746
W G + + +E I+ G
Sbjct: 126 AARWAALMSGKVTEYLGTKEKIEEG 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,010,535
Number of Sequences: 27780
Number of extensions: 485148
Number of successful extensions: 1402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3078165110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -