Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_N03
(1250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 31 0.44
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 30 0.58
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 28 2.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 28 2.3
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 28 3.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 4.1
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 27 4.1
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 4.1
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 5.4
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 9.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 9.5
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 30.7 bits (66), Expect = 0.44
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 561 NQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYNDHSFLGYGNN 728
+ + +T++P P + +T N PP+ ++KS PSV+ L N S + NN
Sbjct: 365 SSRPAHTSLPPIPTVQ-TTSSNVPPVNR--PSLKSKSPSVSNILSNQLSPISSANN 417
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 30.3 bits (65), Expect = 0.58
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 325 SIFVNLLYVYDLATKFARLISFNRNVPTFNLLRSQIPLHHH 203
S F LLY + AT A + F+ + + R ++P HHH
Sbjct: 26 SFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHH 66
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 573 TYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYNDHSFLGYGNNMMLQNSYG 752
+Y++ TS S ST + +D + SN P+ S Y YGN+ ++ N+
Sbjct: 113 SYSDSSTSSARSSSTSGSISLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSSIIMNAVE 172
Query: 753 NN 758
N
Sbjct: 173 YN 174
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 531 NISMHQQALYNQQSTYTNIPTSPNISYSTKPNG--PPIEDLFDTIKSNEPSVNKS 689
NI+ Q+ + ++T IP+ ++YS P PP E DTI PSV+ S
Sbjct: 59 NIASFQKP--SSKATRPYIPSYTRLTYSVPPLPIPPPSEQSLDTIIYRNPSVSSS 111
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 663 SNEPSVNKSLYNDHSFLGYGNNMMLQNSYGNNIDLSVNNQSLSQWQD 803
++ P+ K+ N H+F G G + + G N D+ V Q LS + D
Sbjct: 288 TDTPNKIKNKINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLD 334
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 561 NQQSTYTNIPTSPNISYSTKPNGPPIEDLFDT-IKSNEPSVNKSLYNDHSFLGYGNNMML 737
N S N S N + + + ++ L + + S+ + NK YN+++ YGNN
Sbjct: 568 NSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQ 627
Query: 738 QNSYGNNIDLSVNNQ 782
+ NN N+Q
Sbjct: 628 NYNNNNNSSQGGNSQ 642
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/59 (28%), Positives = 22/59 (37%)
Frame = +3
Query: 696 NDHSFLGYGNNMMLQNSYGNNIDLSVNNQSLSQWQDICQEQHEYWGDXVXGFHXNAANT 872
ND F YG L N+ +I L +WQ + H YW D H + T
Sbjct: 228 NDKLFTEYG--FCLSNNPNISIQLD-RFIEFDKWQQSFLQDHGYWNDYTCSLHGASFRT 283
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 315 TKMEPMTLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLS 446
T P S HSP +PN L P LG N N LS
Sbjct: 421 THFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLS 464
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +3
Query: 636 IEDLFDTIKSNEPSVNKSLYNDHSFLGYGNNMMLQNSYGNNIDLSVNNQSLSQWQDICQE 815
I + ++K S+ K + H + + + G N+D + L WQ +C E
Sbjct: 166 IYSILASLKHTNDSLQKKELSPHE-IAESPSSHSTSPMGRNVDTETLSFLLIDWQRLCAE 224
Query: 816 QHEYWGD 836
Q+ + D
Sbjct: 225 QNTFLRD 231
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = -2
Query: 247 PTFNLLRSQI--------PLHHHRIRDLK*KTKRLNLPVNFLVFQF 134
PTF +L SQ+ L+ RDL KTKRL P N L+ QF
Sbjct: 101 PTFWVLLSQLIDEFLKESELNFVAARDLLIKTKRLPKPFNNLLIQF 146
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +3
Query: 315 TKMEPMTLGSPTHSPS---GSPNVGYLPPXLLGEINPPTTP 428
T + P G+PT S GSP +GY+ P + P P
Sbjct: 618 TSVAPSPNGTPTSGNSSTVGSPMIGYMAPQFIPPYAMPQFP 658
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,759,313
Number of Sequences: 5004
Number of extensions: 74022
Number of successful extensions: 231
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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