Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N03
         (1250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861...    30   3.3  
11_06_0610 - 25449085-25453284                                         29   7.7  
07_03_0843 - 21962223-21963815,21963957-21964607                       29   7.7  

>04_04_0487 -
           25585229-25585540,25585627-25585745,25586029-25586194,
           25586295-25586427,25586527-25586618,25586739-25586925,
           25587183-25587271,25587318-25587379,25587462-25587567,
           25587754-25588052,25588181-25588288,25588369-25588439,
           25588792-25588871
          Length = 607

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 528 QNISMHQQALYNQQSTYTNIPTSPNISYSTKPNGPPI-EDLFDTIKSNEPSVNKSLYNDH 704
           +++S    ++  QQ    +IP +      T  +G     +  D +KS  P  +K  YN  
Sbjct: 66  RSLSSTVSSMVTQQEAQADIPVAKTSFQGTPESGNRNGAEKSDQVKSYTPVASKLAYNQS 125

Query: 705 SFLGYGN 725
           + L YGN
Sbjct: 126 TGLAYGN 132


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 324 EPMTLGSPTHSPSGSPNV-GYLPPXLLGEINPPTTPRTNSLSPTK 455
           EP T  SP  +P  SP   G  PP      +PP  P  ++ SP K
Sbjct: 534 EPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPK 578



 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 327 PMTLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLSPTK 455
           P+  G     P   P  G  PP    + +PP TP   + SP K
Sbjct: 567 PVPEGHTPSPPKSGPPAGESPPTPESKASPPPTPEEYTPSPPK 609


>07_03_0843 - 21962223-21963815,21963957-21964607
          Length = 747

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 555 LYNQQSTYTNIPTSPNISYSTKPNGPPIEDLFDTIKSNEPSVNKSLYNDHSFLGYGNNMM 734
           +YN   T    P +  ++  T+  G  IE + +  K +   + K +  DH   G+  N+ 
Sbjct: 174 VYNSMKTDQGAPNATWMANGTQWPGTWIEPIENHRKGHHAGIVKVVL-DHPIRGH--NLS 230

Query: 735 LQNSYGNNIDLSVNN 779
           L++S GNN++ +  +
Sbjct: 231 LKDSTGNNLNFNATD 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,731,155
Number of Sequences: 37544
Number of extensions: 467874
Number of successful extensions: 1218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3864364464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)