Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N03
         (1250 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC061698-1|AAH61698.1|  326|Homo sapiens nucleoporin 35kDa protein.    43   0.003
BC047029-1|AAH47029.1|  326|Homo sapiens NUP35 protein protein.        43   0.003
AF514993-1|AAM76704.1|  326|Homo sapiens nucleoporin Nup35 protein.    43   0.003
AF411516-1|AAL86379.1|  326|Homo sapiens mitotic phosphoprotein ...    43   0.003
AC064871-3|AAY24198.1|  132|Homo sapiens unknown protein.              43   0.003
BC082760-1|AAH82760.1| 1062|Homo sapiens ATXN2L protein protein.       33   1.6  
BC068012-1|AAH68012.1| 1098|Homo sapiens ATXN2L protein protein.       33   1.6  
AJ317974-1|CAC38072.3| 1044|Homo sapiens ataxin-2 related domain...    33   1.6  
AJ317973-1|CAC38071.3| 1044|Homo sapiens ataxin-2 related domain...    33   1.6  
AJ317972-1|CAC38070.3| 1097|Homo sapiens ataxin-2 related domain...    33   1.6  
AJ317971-1|CAC38069.3| 1062|Homo sapiens ataxin-2 related domain...    33   1.6  
AJ317970-1|CAC38068.1| 1075|Homo sapiens ataxin-2 related domain...    33   1.6  

>BC061698-1|AAH61698.1|  326|Homo sapiens nucleoporin 35kDa protein.
          Length = 326

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 324 EPMTLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLS-PTKG 458
           EPM LGSPT SP    N  +LP  L+G++  P TP+  S+S P+ G
Sbjct: 16  EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60


>BC047029-1|AAH47029.1|  326|Homo sapiens NUP35 protein protein.
          Length = 326

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 324 EPMTLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLS-PTKG 458
           EPM LGSPT SP    N  +LP  L+G++  P TP+  S+S P+ G
Sbjct: 16  EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60


>AF514993-1|AAM76704.1|  326|Homo sapiens nucleoporin Nup35 protein.
          Length = 326

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 324 EPMTLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLS-PTKG 458
           EPM LGSPT SP    N  +LP  L+G++  P TP+  S+S P+ G
Sbjct: 16  EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60


>AF411516-1|AAL86379.1|  326|Homo sapiens mitotic phosphoprotein 44
           protein.
          Length = 326

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 324 EPMTLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLS-PTKG 458
           EPM LGSPT SP    N  +LP  L+G++  P TP+  S+S P+ G
Sbjct: 16  EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60


>AC064871-3|AAY24198.1|  132|Homo sapiens unknown protein.
          Length = 132

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 324 EPMTLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLS-PTKG 458
           EPM LGSPT SP    N  +LP  L+G++  P TP+  S+S P+ G
Sbjct: 16  EPMMLGSPT-SPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60


>BC082760-1|AAH82760.1| 1062|Homo sapiens ATXN2L protein protein.
          Length = 1062

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 333 TLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLSP 449
           TL SP++ PSG  +V   PP  +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457


>BC068012-1|AAH68012.1| 1098|Homo sapiens ATXN2L protein protein.
          Length = 1098

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 333 TLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLSP 449
           TL SP++ PSG  +V   PP  +G + PP +P++ + +P
Sbjct: 444 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 480


>AJ317974-1|CAC38072.3| 1044|Homo sapiens ataxin-2 related domain
           protein protein.
          Length = 1044

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 333 TLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLSP 449
           TL SP++ PSG  +V   PP  +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457


>AJ317973-1|CAC38071.3| 1044|Homo sapiens ataxin-2 related domain
           protein protein.
          Length = 1044

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 333 TLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLSP 449
           TL SP++ PSG  +V   PP  +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457


>AJ317972-1|CAC38070.3| 1097|Homo sapiens ataxin-2 related domain
           protein protein.
          Length = 1097

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 333 TLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLSP 449
           TL SP++ PSG  +V   PP  +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457


>AJ317971-1|CAC38069.3| 1062|Homo sapiens ataxin-2 related domain
           protein protein.
          Length = 1062

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 333 TLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLSP 449
           TL SP++ PSG  +V   PP  +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457


>AJ317970-1|CAC38068.1| 1075|Homo sapiens ataxin-2 related domain
           protein protein.
          Length = 1075

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 333 TLGSPTHSPSGSPNVGYLPPXLLGEINPPTTPRTNSLSP 449
           TL SP++ PSG  +V   PP  +G + PP +P++ + +P
Sbjct: 421 TLSSPSNRPSGETSVP--PPPAVGRMYPPRSPKSAAPAP 457


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,486,242
Number of Sequences: 237096
Number of extensions: 2908082
Number of successful extensions: 6530
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6506
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17834978520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)