Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N02
         (1282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.6  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   7.4  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   7.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 1223 GGGXFXPPPPXKKGXXPPPP 1164
            GG    PPPP   G  PPPP
Sbjct: 759  GGPPPPPPPPGVAGAGPPPP 778


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 93   PAPHPXXXXPXPPXSXXPXXVPAGEPP 13
            PAP      P P  +  P  VP+G PP
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPP 1141


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -1

Query: 634 PXGEKKXPXGPPXPPXKXXFGPGXXXXRFPGXPXXP 527
           P G    P  PP PP      P       PG P  P
Sbjct: 280 PMGPGGAPLVPPPPPGMVMASPSPAAATIPGAPVMP 315


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 1223 GGGXFXPPPPXKKGXXPPPPXF 1158
            G G   PPPP   G   PPP F
Sbjct: 123  GVGYTAPPPPAGFGRGAPPPGF 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,236
Number of Sequences: 5004
Number of extensions: 13022
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)