Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N02
         (1282 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ890451-1|CAI67595.1| 1125|Homo sapiens collagen, type XXVIII p...    33   1.7  
X57527-1|CAA40748.1|  744|Homo sapiens alpha 1(VIII) collagen pr...    31   9.0  
BT009917-1|AAP88919.1|  744|Homo sapiens collagen, type VIII, al...    31   9.0  
BC013581-1|AAH13581.1|  744|Homo sapiens collagen, type VIII, al...    31   9.0  
AY550974-1|AAT52220.1|  745|Homo sapiens cell proliferation-indu...    31   9.0  

>AJ890451-1|CAI67595.1| 1125|Homo sapiens collagen, type XXVIII
           protein.
          Length = 1125

 Score = 33.5 bits (73), Expect = 1.7
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +3

Query: 486 GXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGPXG 614
           G P P G +G    G KG PG R    PGP      G  GP G
Sbjct: 650 GPPGPMGLRGVGDTGAKGEPGVR--GPPGPSGPRGVGTQGPKG 690



 Score = 31.5 bits (68), Expect = 6.8
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +3

Query: 483 KGXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGPXG 614
           KG P P G  G   +G KG  G +    PGPK     G  G  G
Sbjct: 695 KGLPGPPGPPGYGSQGIKGEQGPQ--GFPGPKGTMGHGLPGQKG 736


>X57527-1|CAA40748.1|  744|Homo sapiens alpha 1(VIII) collagen
           protein.
          Length = 744

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
 Frame = +3

Query: 441 PPPEXMGGXKXXFFKGXPXPXGXKGXXKKGXKGXPGN-RXXXXPGPKXXF-XGGXGGPXG 614
           P P  + G      KG P P G  G  K G  G PG       PG K      G  GP G
Sbjct: 132 PGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMG 191


>BT009917-1|AAP88919.1|  744|Homo sapiens collagen, type VIII, alpha
           1 protein.
          Length = 744

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
 Frame = +3

Query: 441 PPPEXMGGXKXXFFKGXPXPXGXKGXXKKGXKGXPGN-RXXXXPGPKXXF-XGGXGGPXG 614
           P P  + G      KG P P G  G  K G  G PG       PG K      G  GP G
Sbjct: 132 PGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMG 191


>BC013581-1|AAH13581.1|  744|Homo sapiens collagen, type VIII, alpha
           1 protein.
          Length = 744

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
 Frame = +3

Query: 441 PPPEXMGGXKXXFFKGXPXPXGXKGXXKKGXKGXPGN-RXXXXPGPKXXF-XGGXGGPXG 614
           P P  + G      KG P P G  G  K G  G PG       PG K      G  GP G
Sbjct: 132 PGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMG 191


>AY550974-1|AAT52220.1|  745|Homo sapiens cell
           proliferation-inducing protein 41 protein.
          Length = 745

 Score = 31.1 bits (67), Expect = 9.0
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
 Frame = +3

Query: 441 PPPEXMGGXKXXFFKGXPXPXGXKGXXKKGXKGXPGN-RXXXXPGPKXXF-XGGXGGPXG 614
           P P  + G      KG P P G  G  K G  G PG       PG K      G  GP G
Sbjct: 133 PGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMG 192


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,904,780
Number of Sequences: 237096
Number of extensions: 1427105
Number of successful extensions: 7975
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7084
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18385440820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)