Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_N02
(1282 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 33 0.58
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 2.3
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 31 2.3
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 2.3
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 31 2.3
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 31 2.3
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 3.1
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 3.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.4
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 5.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 7.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 7.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 7.1
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 9.4
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 32.7 bits (71), Expect = 0.58
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +3
Query: 480 FKGXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGP 608
F G P G +G G G PGN P + F G G P
Sbjct: 202 FPGQPGADGQRGSGAPGAPGAPGNAGPAGPAGQDGFPGQDGAP 244
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +3
Query: 486 GXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGP 608
G P G +G G G PGN P + F G G P
Sbjct: 220 GQPGADGQRGAGTPGAPGAPGNAGPAGPSGQDGFPGQDGAP 260
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +3
Query: 486 GXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGP 608
G P G +G G G PGN P + F G G P
Sbjct: 204 GQPGADGQRGAGTPGAPGAPGNAGPAGPSGQDGFPGQDGAP 244
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 1211 FXPPPPXKKGXXPPPPXF 1158
F PPPP G PPPP F
Sbjct: 73 FIPPPPGPGGIPPPPPMF 90
Score = 30.3 bits (65), Expect = 3.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 1217 GXFXPPPPXKKGXXPPPPXF 1158
G PPPP G PPPP F
Sbjct: 92 GGIPPPPPMMGGIPPPPPMF 111
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 1223 GGGXFXPPPPXKKGXXPPPP 1164
G G PPPP G PPPP
Sbjct: 79 GPGGIPPPPPMFAGGIPPPP 98
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 1205 PPPPXKKGXXPPPPXFF 1155
PPPP G PPPP F
Sbjct: 95 PPPPPMMGGIPPPPPMF 111
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 30.7 bits (66), Expect = 2.3
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = +3
Query: 444 PPEXMGGXKXXFFKGXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGPXG 614
PP MGG G P G +G G PG+ P P GG GGP G
Sbjct: 167 PPGGMGGPPGHGGMGGPPGHGGQG-------GPPGHGGMGGPPPGQGGPGGPGGPGG 216
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.7 bits (66), Expect = 2.3
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = +3
Query: 444 PPEXMGGXKXXFFKGXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGPXG 614
PP MGG G P G +G G PG+ P P GG GGP G
Sbjct: 447 PPGGMGGPPGHGGMGGPPGHGGQG-------GPPGHGGMGGPPPGQGGPGGPGGPGG 496
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 30.7 bits (66), Expect = 2.3
Identities = 20/58 (34%), Positives = 22/58 (37%)
Frame = +3
Query: 441 PPPEXMGGXKXXFFKGXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGPXG 614
PP + G G P P G G + G KG PG R P P G GP G
Sbjct: 212 PPQDGKSGDDG--MAGQPGPIGRPG--RDGMKGAPGARGRLIPVPGPQGAPGKPGPIG 265
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 483 KGXPXPXGXKGXXKKGXKGXPGNRXXXXPGPKXXFXGGXGGP 608
+G P G +G +G G PGN+ P F G GGP
Sbjct: 244 RGAPGATGSQGP--RGNDGRPGNKGPAGPPGDQGFDGAPGGP 283
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 30.3 bits (65), Expect = 3.1
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = -1
Query: 613 PXGPPXPPXKXXFGPGXXXXRFPGXPXXPFFXXPLXPXGXGFPLKKXXFXPPXNSG 446
P GPP PP PG PG P P PL P G P + PP + G
Sbjct: 185 PKGPPGPPGAPG-APGT-----PGEPGVPAQSEPLIPGEPGPPGEAGPQGPPGSPG 234
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 30.3 bits (65), Expect = 3.1
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = -1
Query: 613 PXGPPXPPXKXXFGPGXXXXRFPGXPXXPFFXXPLXPXGXGFPLKKXXFXPPXNSG 446
P GPP PP PG PG P P PL P G P + PP + G
Sbjct: 185 PKGPPGPPGAPG-APGT-----PGEPGVPAQSEPLIPGEPGPPGEAGPQGPPGSPG 234
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.5 bits (63), Expect = 5.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -1
Query: 613 PXGPPXPPXKXXFG-PGXXXXRFPGXPXXP 527
P GPP PP + G PG R PG P P
Sbjct: 246 PPGPPGPPTRRPPGPPGPPTRRPPGPPGPP 275
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 1223 GGGXFXPPPPXKKGXXPPPPXFF 1155
G G F PPPP G PPP F
Sbjct: 429 GPGGFGPPPPGGPGAYGPPPTGF 451
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 93 PAPHPXXXXPXPPXSXXPXXVPAGEPP 13
P P P P PP + P P G PP
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPP 281
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 93 PAPHPXXXXPXPPXSXXPXXVPAGEPP 13
P P P P PP + P P G PP
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPP 302
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 93 PAPHPXXXXPXPPXSXXPXXVPAGEPP 13
P P P P PP + P P G PP
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPP 287
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 9.4
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +3
Query: 486 GXPXPXGXKGXX-KKGXKGXPGNRXXXXPGPKXXFXGGXGGPXG 614
G P P G G G G PG R PGP G GP G
Sbjct: 143 GPPGPDGNPGAPGNDGEAGSPGTRSISSPGPAG--PAGPPGPPG 184
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 9.4
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +3
Query: 486 GXPXPXGXKGXX-KKGXKGXPGNRXXXXPGPKXXFXGGXGGPXG 614
G P P G G G G PG R PGP G GP G
Sbjct: 143 GPPGPDGNPGAPGNDGEAGSPGTRSISSPGPAG--PAGPPGPPG 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,478
Number of Sequences: 27780
Number of extensions: 170114
Number of successful extensions: 1034
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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