Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_N01
         (1137 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    28   0.11 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   7.5  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 158 MSSLNGFIFNISIVWLEAERRRCPFSEFVVCLL 60
           M +++G ++ I+ VW+     RC FSEF+  LL
Sbjct: 723 MIAVSGLVY-IATVWICTLMNRCKFSEFMTKLL 754


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +1

Query: 523 ASPIDTLKEFYQKYNPPIRAHKHTCVGLGMEVIKRLKLLEKDFPGITKAMMLVSCDENIE 702
           +S ID  K  +     P++        L ++ ++ LK   +  PGI  ++ ++  D N  
Sbjct: 91  SSIIDKTKISFNFSQGPVKIMLQNATDLFIKSLESLKPGNQSTPGIKLSINIILSDPNTN 150

Query: 703 DL 708
            L
Sbjct: 151 KL 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,456
Number of Sequences: 336
Number of extensions: 4019
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 32991040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)