Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M22
         (1141 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000155BFE6 Cluster: PREDICTED: similar to prominin-2...    35   3.4  
UniRef50_Q96DR3 Cluster: CDNA FLJ30206 fis, clone BRACE2001508, ...    35   3.4  
UniRef50_Q8PPR1 Cluster: Putative uncharacterized protein XAC062...    35   4.5  
UniRef50_Q1JPW9 Cluster: Shadow of prion protein; n=9; Clupeocep...    34   5.9  
UniRef50_Q6FAM3 Cluster: Putative uncharacterized protein; n=1; ...    34   5.9  
UniRef50_Q14695 Cluster: Uncharacterized protein KIAA0087; n=3; ...    34   7.8  

>UniRef50_UPI000155BFE6 Cluster: PREDICTED: similar to prominin-2,
           partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           similar to prominin-2, partial - Ornithorhynchus
           anatinus
          Length = 526

 Score = 35.1 bits (77), Expect = 3.4
 Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
 Frame = +1

Query: 1   LXRAPTGPSFISQC-------WSSRQRSGPVPGX-PRATRPPQHCGWGRVGPVRRPAASS 156
           L RA  G S I  C       W + +  GP+PG  P A   P  CG  RVG  R+ A  S
Sbjct: 62  LRRAVDGESQIPGCAACPVLRWRAPRAGGPLPGGLPGAQLAPSPCGALRVGGGRQLAPRS 121

Query: 157 DVARPLDWPRY 189
            +  PLD P Y
Sbjct: 122 RMPGPLD-PLY 131


>UniRef50_Q96DR3 Cluster: CDNA FLJ30206 fis, clone BRACE2001508,
           weakly similar to PROTEIN- LYSINE 6-OXIDASE; n=3; Homo
           sapiens|Rep: CDNA FLJ30206 fis, clone BRACE2001508,
           weakly similar to PROTEIN- LYSINE 6-OXIDASE - Homo
           sapiens (Human)
          Length = 168

 Score = 35.1 bits (77), Expect = 3.4
 Identities = 22/50 (44%), Positives = 23/50 (46%)
 Frame = +1

Query: 76  GXPRATRPPQHCGWGRVGPVRRPAASSDVARPLDWPRY*RDSPRRLATRQ 225
           G P A  P QH  W R GP RRP  S  + R   WP   R  P    TRQ
Sbjct: 57  GAPPAQGPAQH-PWSR-GPPRRPPRSVKLCRAQQWPET-RADPLPAGTRQ 103


>UniRef50_Q8PPR1 Cluster: Putative uncharacterized protein XAC0624;
           n=1; Xanthomonas axonopodis pv. citri|Rep: Putative
           uncharacterized protein XAC0624 - Xanthomonas axonopodis
           pv. citri
          Length = 178

 Score = 34.7 bits (76), Expect = 4.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 34  SQCWSSRQRSGPVPGXPRATRPPQHCGWGRVGPVRR 141
           S+C  +   SG VPG  R+  P + C W R G V R
Sbjct: 64  SRCQDNESGSGQVPGVNRSNLPGRACAWRRPGDVTR 99


>UniRef50_Q1JPW9 Cluster: Shadow of prion protein; n=9;
           Clupeocephala|Rep: Shadow of prion protein - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 132

 Score = 34.3 bits (75), Expect = 5.9
 Identities = 24/57 (42%), Positives = 28/57 (49%)
 Frame = +2

Query: 44  GXRGSAAGLCQGSRVQRARPNIVAGVAWARCAGRRRPATSLGLWTGRATDVTRLDDS 214
           G RGSA G  +G R  RAR +    VA A  AG    A +LG     A+   R DDS
Sbjct: 30  GARGSARGTARGGRTSRARGSPAVRVAGAAAAG---AAVALGAGGWYASAQRRPDDS 83


>UniRef50_Q6FAM3 Cluster: Putative uncharacterized protein; n=1;
           Acinetobacter sp. ADP1|Rep: Putative uncharacterized
           protein - Acinetobacter sp. (strain ADP1)
          Length = 136

 Score = 34.3 bits (75), Expect = 5.9
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = +1

Query: 7   RAPTGPSFISQCWSSRQRSGPVPGXPRATRPPQHCGWGRVGPVRRPAASSDVARPLDWPR 186
           + P GP+ + Q     +R GP  G      P  H  W +   V R   S+      DW R
Sbjct: 39  QGPQGPNDMKQHRMDDRRDGPQGGPAHDNGPRPHLDWKKGDRVPRDYRSNSKHYVSDWKR 98

Query: 187 Y*RDSPRRLATRQTRISIMGDFIL 258
           +   +P R       + I GD++L
Sbjct: 99  HDLPAPPR---GHRWLKINGDYVL 119


>UniRef50_Q14695 Cluster: Uncharacterized protein KIAA0087; n=3;
           Homo sapiens|Rep: Uncharacterized protein KIAA0087 -
           Homo sapiens (Human)
          Length = 138

 Score = 33.9 bits (74), Expect = 7.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 37  QCWSSRQRSGPVPGXPRAT-RPPQHCGWGRVGPVRRPAASS 156
           +CWS R+R G   G PR+T + P H G G+      P A+S
Sbjct: 68  KCWSVRERGGRHIGGPRSTLKHPAHHGMGKNLATSLPTAAS 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,279,718
Number of Sequences: 1657284
Number of extensions: 14066155
Number of successful extensions: 34129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34104
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 112626549911
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)