Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_M21
(1168 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 285 1e-77
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 272 6e-74
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 128 1e-30
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 105 2e-23
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 61 3e-10
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 55 2e-08
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 49 1e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 48 3e-06
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 48 3e-06
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 40 7e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 39 0.001
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 39 0.002
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 39 0.002
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.011
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 36 0.011
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 34 0.033
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 34 0.044
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 33 0.058
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.31
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 29 1.2
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 1.2
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 29 1.6
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 28 2.2
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.8
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 26 8.7
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 285 bits (698), Expect = 1e-77
Identities = 130/172 (75%), Positives = 148/172 (86%)
Frame = +3
Query: 270 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 449
K S++F NKEMRILMLGLDAAGKTTILYKLKL QSV TIPTVGFNVETVTYKN+KFNVW
Sbjct: 11 KPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVW 70
Query: 450 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 629
DVGGQDKIRPLWRHY+TGT+GLIFVVD AD +RI EARQELHRII+DREMRD ++L+ AN
Sbjct: 71 DVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLAN 130
Query: 630 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHK 785
KQDLP A+ P +I + L L +++DR W VQP+CA TGDGL EGL WL+ N K
Sbjct: 131 KQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 272 bits (667), Expect = 6e-74
Identities = 119/176 (67%), Positives = 148/176 (84%)
Frame = +3
Query: 258 VNMGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVK 437
+++ KL +FG +EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV Y+N+
Sbjct: 3 LSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNIS 62
Query: 438 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL 617
F VWDVGGQDKIRPLWRHY+ TQG+IFVVD DR+RI EA +EL R++N+ E+RDA++L
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLL 122
Query: 618 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHK 785
+FANKQDLP+AM EI +KLGL +R R WY+Q +CAT+GDGLYEGL WL++N K
Sbjct: 123 VFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLK 178
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 128 bits (310), Expect = 1e-30
Identities = 58/164 (35%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Frame = +3
Query: 297 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 473
+E+R+L+LGLD AGKTTIL K L + V + PT GF + T+ + ++F +WD+GGQ +
Sbjct: 15 REVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTL 73
Query: 474 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 653
R W++Y+ T+ +I+VVD D R++E R L ++ + ++ IL+ ANK D+ A+
Sbjct: 74 RNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGAL 133
Query: 654 KPHEIQEKLGLTRIRDRNWYVQPSCATTGDGLYEGLTWLTSNHK 785
EI + L +++ + +W + A TG + + ++WL ++ K
Sbjct: 134 SSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 105 bits (251), Expect = 2e-23
Identities = 50/131 (38%), Positives = 76/131 (58%)
Frame = +3
Query: 294 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 473
NK ++L LGLD AGKTT+L+ LK + PT+ E + NV+F +D+GG +
Sbjct: 18 NKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQA 77
Query: 474 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 653
R LWR Y+ G++++VDC D +R+ E++ EL ++ E+ LI NK D P A+
Sbjct: 78 RRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAI 137
Query: 654 KPHEIQEKLGL 686
E++ LGL
Sbjct: 138 SEDELKAALGL 148
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 61.3 bits (142), Expect = 3e-10
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Frame = +3
Query: 306 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY----KNVKFNVWDVGGQDK 470
++L++G GK+ +L + + I T+G + + T+ K VK +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 471 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPD 647
R + YY G G+I V D D+D + +Q L I DR + + L+ NK D+ D
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI--DRYAVEGVNRLLVGNKSDMVD 127
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 54.8 bits (126), Expect = 2e-08
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +3
Query: 303 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 467
+++L++G GK+ +L + + I T+G F + T+ K +K +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 468 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 647
+ R + YY G G++ + D D+ D R + + ++ NK D D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSN-VEQHASENVYKILIGNKCDCED 128
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 49.2 bits (112), Expect = 1e-06
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = +3
Query: 306 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 470
+ +++G GK+ +L + + ++ + T+G T + K +K +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 471 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 641
R + YY G G + V D + D + L + + + + +I++ NK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 48.0 bits (109), Expect = 3e-06
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Frame = +3
Query: 288 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIP-TVGFNVETVTY----KNVKFNVWD 452
F ++ +++ LG + GKT+++ + Q T T+G + + T + V+ +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 453 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 632
GQ++ R L Y + I V D + + + + + +R D II++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG-DDVIIVLVGNK 125
Query: 633 QDLPD 647
DL D
Sbjct: 126 TDLAD 130
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 47.6 bits (108), Expect = 3e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 426 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 557
K +K +WD GQ+K R + R+YY G G + V D ++D +E
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEE 103
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 39.9 bits (89), Expect = 7e-04
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Frame = +3
Query: 306 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYK---NVKFNVWDVGGQD 467
++++LG A GK++++ + Q T+G F +T+ +VK +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 468 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA-NKQDL 641
+ + L YY I V D +++A+ + + R+ + I++ A NK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKEL--QRQAPEGIVIALAGNKLDL 132
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 393 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR--IDEARQ 566
T+G + + T +++ ++DVGGQ R W + + +IF V D D+ + A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 567 ELHRIINDREMRDAII 614
E +R++ + D+II
Sbjct: 239 ERNRLVESISLFDSII 254
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 38.7 bits (86), Expect = 0.002
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Frame = +3
Query: 387 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD------- 545
I T G + ET + +DVGGQ R W H + L+F+V A D
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 546 ---RIDEARQELHRIINDREMRDAIILIFANKQDL 641
++ EA I N ++ +++F NK DL
Sbjct: 279 SGNQMQEALLLWDSICNSSWFSESAMILFLNKLDL 313
Score = 33.9 bits (74), Expect = 0.044
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Frame = +3
Query: 153 ISNHQCDRIVATNQQSGMVPV--SWRRLVLLCG*GKLVNMGKLLSKIFGNK-----EMRI 311
+S+ Q T Q+ VPV +W +VL GK N+ ++ GN ++++
Sbjct: 21 LSDTQTSNSSTTGSQNARVPVLENWLNIVLR---GKPQNVESSGVRVKGNSTSGGNDIKV 77
Query: 312 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 434
L+LG +GKTTI+ +++L S V + ++N+
Sbjct: 78 LLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENI 118
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +3
Query: 306 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETV----TYKNVKFNVWDVGGQDK 470
+++++G GKTT + + G+ I T+G V + + + FNVWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 471 IRPLWRHYYTGTQGLIFVVDCADR 542
+ L YY Q I + D R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 35.9 bits (79), Expect = 0.011
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +3
Query: 294 NKEMRILMLGLDAAGKTTILYKLKLG---QSVTTIPTVGFNVETVTYKN--VKFNVWDVG 458
N +++ M+G + GKT+++ G + T V F +T++ +N + F++WD+G
Sbjct: 8 NVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLG 67
Query: 459 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 566
GQ + + ++F+ D + + ++ ++
Sbjct: 68 GQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 35.9 bits (79), Expect = 0.011
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 7/140 (5%)
Frame = +3
Query: 282 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW--DV 455
K K + ++G +GKT++ +L + TT+P++ N E V K+ W D+
Sbjct: 31 KTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAVW----KYGAWLVDL 85
Query: 456 GGQDKIRPLWRHYYTG---TQGLIFVVDCA--DRDRIDEARQELHRIINDREMRDAIILI 620
G + + ++G + ++FV++ A DRD + I+ R+ +LI
Sbjct: 86 PGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLI 145
Query: 621 FANKQDLPDAMKPHEIQEKL 680
NK DL A +IQ+ L
Sbjct: 146 ACNKFDLFTAQPAEKIQQLL 165
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 34.3 bits (75), Expect = 0.033
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Frame = +3
Query: 303 MRILMLGLDAAGKTTILYK-LKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 467
+++++LG GKT+I+ + + S T+G + T V K V +WD GQ+
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 468 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQELHRIINDREMRDAIILIFANKQD 638
+ + L +Y G + V D + + +D R E + ++ NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVD 128
Query: 639 LPDAMKPHEIQEKLGLTRIRDRNWYVQPS 725
+ + + + L + R Y + S
Sbjct: 129 VEEQKRMVSKSKALAFCQARGEIPYFETS 157
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.9 bits (74), Expect = 0.044
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +3
Query: 306 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVET---VTYKNVKFNVWDVGGQDKI 473
+++++G A GKT++L LG T +PTV N + V K+V+ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 474 RPLWRHYYTGTQGLI--FVVDCAD 539
L Y ++ F +D D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 33.5 bits (73), Expect = 0.058
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Frame = +3
Query: 276 LSKIFGNKEM----RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVET---VTYKN 431
+S FG+K+ +I++LG AAGKT++L G PT+ N V +
Sbjct: 1 MSSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNS 60
Query: 432 VKFNVWDVGGQDKIRPLWRHYYTGTQGLI--FVVDCAD 539
++ ++WD GQ++ L Y+ T ++ F VD D
Sbjct: 61 IELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 31.1 bits (67), Expect = 0.31
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Frame = +3
Query: 303 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 467
+++++LG GKT ++ + K + F + V K V +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 468 KIRPLWRHYYTGTQGLIFVVDCADR---DRIDEARQE 569
+ + L +Y G + V + + D ++ RQE
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQE 105
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 305 HLLVTEYLREKLPHVDELAST 243
H+L T+YLR LP+VD+L T
Sbjct: 369 HVLSTDYLRGFLPYVDQLLDT 389
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Frame = +3
Query: 306 RILMLGLDAAGKTT---ILYKLKLGQSVTTI-PTVGFNVETVTYK-NVKFNVWDVGGQDK 470
++L++G +GK++ I++ + + + T+ V + N+ N+WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEA 63
Query: 471 IRPLW-----RHYYTGTQGLIFVVDCADRD 545
+ H + Q LI+V D R+
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 609 IILIFANKQDLPDAMKPHEIQEKLGLTRI 695
I++ AN DLP+ + + I +LGL+R+
Sbjct: 482 IVVAVANTMDLPERILSNRISSRLGLSRV 510
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 231 VLLCG*GKLVNMGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGF 404
+LL G +L L++KI+ + ++ LD G T +L K + + PT F
Sbjct: 247 ILLEGYAELPTYRMLMAKIYEEHKDPSTIMALDGVGTTALLVKASVHRDGALFPTFPF 304
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 297 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTV 398
KE+R+++ G GK++++ L +VT+IP V
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 527 HNEYQALSACVVMPPQRPYFVLPPDVPDIKFDVLIRYGFNVEAHCRYCRDR 375
H + ALSA ++ P + ++P D P+ K YG V + RY DR
Sbjct: 85 HAQAIALSAKILGIPAK--IIMPLDAPEAKVAATKGYGGQVIMYDRYKDDR 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,234,033
Number of Sequences: 5004
Number of extensions: 84824
Number of successful extensions: 235
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -