Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M19
         (1180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    44   4e-05
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.41 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.72 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   2.9  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.8  

>SPCC1682.05c |||signal recognition particle subunit
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 15/208 (7%)
 Frame = +2

Query: 431  IPLLQAERAWAHAMQLRQXANTEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCEARTVL 610
            I L  A+RA+   + LR        ++ H + RLK+A   G+ L+         +    L
Sbjct: 114  ILLFNADRAFQQFVFLRSS------QRRHALRRLKRADQFGKELVSFTNAFDCNDHIFYL 167

Query: 611  EAGAYASWLRGVLLLELQQWREAADSLQRAR---IVLEQLCTALPADERIVYDQKLEELK 781
            EA A+A ++ G L  E + W  +  +   +R   +VL+     L   E+ V  +   ++ 
Sbjct: 168  EAIAFAKYIEGTLNYEKRDWEGSLSAFSISRLSFLVLQNKIDTLAEHEKSVLGELQNQID 227

Query: 782  PSLRYCAYNIG--DESAAGDLMAMRG-----QGLMH--NLDALMAQAKESRSGIMHE--- 925
             +LRY A   G  +++ + D++ +       + + H  ++D+ + Q        +     
Sbjct: 228  SNLRYVAQRTGLQNQTKSLDILMLSSIPKDEEVIQHVNSVDSEILQMTGDEQDSLQTITV 287

Query: 926  VKWRGRRVTVKPEKVRLXXXALXDLDKS 1009
            ++WR +RV ++   V L   A+ D+  S
Sbjct: 288  IEWRDQRVKIEHPDVVLALYAIHDVKNS 315


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 20/73 (27%), Positives = 39/73 (53%)
 Frame = -2

Query: 738 AGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKS 559
           + K+  S SST+ +  + S+++    +SSS+ P S  +++ + S+ ++     SS S  S
Sbjct: 361 SSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKS-----SSSSKSS 415

Query: 558 ICPCAHAFFSRDT 520
             P + AF+   T
Sbjct: 416 SAPVSSAFYHNST 428


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 720 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKS 559
           S SS+  +  + S++S    +SSS++  S  +  P +S+  +SH   SS S  S
Sbjct: 175 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSS 228


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -2

Query: 738 AGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAY-APASSTVRASHLPLSSQSCK 562
           +   + S SS++L+  + +A S    +SSS++P S  ++ +PASS+   S +  SSQ   
Sbjct: 37  SSSVIPSSSSSMLSSSSATAIS----SSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSS 92

Query: 561 S 559
           S
Sbjct: 93  S 93


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +2

Query: 428 YIPLLQAERAWAHAMQLRQXANTEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCEARTV 607
           Y      E A   A +++    T     F  +     + AHGQ L    E + +C A TV
Sbjct: 236 YYKSANGESALVSACKVKAVDTTAAGDTF--IGAFSNSIAHGQPLKDSLEFAAKCSAITV 293

Query: 608 LEAGAYAS 631
              GA +S
Sbjct: 294 QRKGAASS 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,523,329
Number of Sequences: 5004
Number of extensions: 59322
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)