Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_M19
(1180 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018... 71 1e-12
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 31 1.3
02_02_0351 + 9257204-9261388 31 1.3
01_06_0203 - 27487469-27489787 31 1.3
06_01_0602 - 4342333-4342790,4342899-4345623 30 3.1
03_06_0506 + 34402494-34403102 30 3.1
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 29 5.4
02_05_0433 - 28939817-28940146 29 7.1
05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866 29 9.4
>08_02_0195 - 14098865-14099083,14100209-14100352,14101820-14101833,
14101919-14102006,14102303-14102426,14102959-14103068,
14103142-14103348,14103441-14103568,14103781-14103892,
14105678-14105695,14105917-14106109,14106274-14106359,
14106494-14106582,14106817-14106863,14107424-14107534,
14110252-14110318,14110419-14110509
Length = 615
Score = 71.3 bits (167), Expect = 1e-12
Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Frame = +2
Query: 521 VSRLKKACAHGQMLLQLCEESGRCEARTVLEAGAYASWLRGVLLLELQQWREAA-DSLQR 697
+ R +KA + LC G ++RT LEA AYAS+++G LL E ++ EAA + +
Sbjct: 105 ICRFRKAVKWATLFSHLCSLKG--DSRTSLEAEAYASYMKGTLLFEQEKNIEAAMTNFKN 162
Query: 698 ARIVLEQLCTALPADERIVYDQKLEELKPSLRYCAYNIGDES-AAGDLMAMRGQGLMHNL 874
R V E+L + +++ Q++EE++P + +C+ +G + A +L+ + +G ++L
Sbjct: 163 TRAVYEELGKYGSIENQLLCRQRIEEVEPMIGFCSRKLGGSALQAHELLDLEKEGPAYDL 222
Query: 875 -----------DALMAQAKESRSGIMHEVKWRGRRVTVKPEKVRLXXXALXDLDKSVS 1015
A++++ + ++ M E W GRR + K R+ L+K ++
Sbjct: 223 FKAKIEVRGQMGAVLSETRSQQAASMTEFSWLGRRFPITNAKTRVSILKAQQLEKDLN 280
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 31.5 bits (68), Expect = 1.3
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 575 EESGRCEARTVLEAGAYASWLRGVLLLELQQWREAADSLQRARIVLEQLCTALPADE-RI 751
EE + E +E G +S L+ +L W + + ++L+QLC + ++ R+
Sbjct: 437 EEFLQFEEDKAMECGNLSSTLQ-----KLYMWEKKLLEEVKCWVILKQLCLSQTEEKMRV 491
Query: 752 VYDQKLEELK 781
+Y+QK EELK
Sbjct: 492 LYNQKREELK 501
>02_02_0351 + 9257204-9261388
Length = 1394
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +2
Query: 713 EQLCTALPADERIVYDQKLEELKPSLRYCAYNIGDESAAGDLMAMRGQGLMHNLDALMAQ 892
++LC+ +P ++ Y Q+LEE R + + S GDL + G+ + NL+ + +
Sbjct: 719 KELCSNIPGIGKMKYLQRLEEYHVKKRDIGFEL---SELGDLTDLEGELKIFNLEKVATR 775
Query: 893 AKESRSGIM 919
+ +++ +M
Sbjct: 776 EEANKAKLM 784
>01_06_0203 - 27487469-27489787
Length = 772
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 47 SCGSXXIHAXXIXFSVHXFNTGXSSVIWSVKSRAIXNG 160
SCG I FS+ NT +V+WS R+ NG
Sbjct: 53 SCGFYPIGTNAFTFSIWLTNTAGKTVVWSANRRSPVNG 90
>06_01_0602 - 4342333-4342790,4342899-4345623
Length = 1060
Score = 30.3 bits (65), Expect = 3.1
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 913 ARTRLFSLCHQRIEVVHESLTAHGHKVSGGGLVTDVVSAIT 791
AR + +CH+ + ++ E L HGH SGG DVV+A T
Sbjct: 997 ARPTMVEVCHE-MALLKEDLAKHGHGGSGG----DVVAAAT 1032
>03_06_0506 + 34402494-34403102
Length = 202
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 877 IEVVHESLTAHGHKVSGGGLVTDVVSAITKTRLQLL*LLIVNNPFV 740
+E +L AHG V + TD+VS + K L+ +++VN P+V
Sbjct: 37 VETTQATLEAHG--VHADVIATDIVSGLEKRLHGLVDVVVVNPPYV 80
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 29.5 bits (63), Expect = 5.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -2
Query: 726 VQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKSIC 553
+ + SST A C+ S ++ P +EA APA+ R PL + ++C
Sbjct: 35 LSTASSTSSASCSPSPLRTLAATDAATPPPEEEAAAPAAEAKRERLQPLQWPARDALC 92
>02_05_0433 - 28939817-28940146
Length = 109
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 662 QQWREAADSLQRARIVLEQLCTALPADERIVYDQKLE 772
QQWR++ +L+R R++LEQ R+ + + E
Sbjct: 54 QQWRQSMQALERERLMLEQAWMEREEQRRVREEARAE 90
>05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866
Length = 350
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 945 RRPRHFTSCIMPERDSLACAISASRLCMS 859
R P+H+ SC PE S A S +C+S
Sbjct: 263 REPKHWHSCSNPEISSYAVLGGGSHICLS 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,287,140
Number of Sequences: 37544
Number of extensions: 509027
Number of successful extensions: 1349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -