Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_M18
(1187 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.99
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.99
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 3.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 3.0
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 23 5.3
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 9.2
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.99
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQKHPQXASXWVPRXLAL 181
G++ + +F+ + + V + FHH++ P W K W+P L +
Sbjct: 326 GSYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIK--MLFLQWLPCLLRM 377
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.99
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQKHPQXASXWVPRXLAL 181
G++ + +F+ + + V + FHH++ P W K W+P L +
Sbjct: 326 GSYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIK--MLFLQWLPCLLRM 377
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 3.0
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQKHPQXASXWVPRXLAL 181
G++ + +F+ + + V + FHH++ P W K W+P L +
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIK--MLFLQWLPCLLRM 309
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 3.0
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQKHPQXASXWVPRXLAL 181
G++ + +F+ + + V + FHH++ P W K W+P L +
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIK--MLFLQWLPCLLRM 309
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 3.0
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQKHPQXASXWVPRXLAL 181
G++ + +F+ + + V + FHH++ P W K W+P L +
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIK--MLFLQWLPCLLRM 309
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 3.0
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQKHPQXASXWVPRXLAL 181
G++ + +F+ + + V + FHH++ P W K W+P L +
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIK--MLFLQWLPCLLRM 309
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 3.0
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQKHPQXASXWVPRXLAL 181
G++ + +F+ + + V + FHH++ P W K W+P L +
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIK--MLFLQWLPCLLRM 309
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 3.0
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQKHPQXASXWVPRXLAL 181
G++ + +F+ + + V + FHH++ P W K W+P L +
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIK--MLFLQWLPCLLRM 309
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.8 bits (49), Expect = 3.0
Identities = 6/39 (15%), Positives = 20/39 (51%)
Frame = +2
Query: 20 GAFXHLRLFLASPPSIAHVCLXGFHHKSQXLXQNPKWQK 136
G + + +F+ + ++ + + +HH++ + +W K
Sbjct: 295 GTYFNCIMFMVASSVVSTILILNYHHRNADTHEMSEWVK 333
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 23.0 bits (47), Expect = 5.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = -2
Query: 859 TPGQSGSPCDCQ---SPHLPSGCRRRWISPRRYHP 764
TP P + Q H P+G + WI+ RY P
Sbjct: 777 TPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLP 811
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 22.2 bits (45), Expect = 9.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 586 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 678
Q +A K A + N II+EPT YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,609
Number of Sequences: 438
Number of extensions: 5707
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40488336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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