Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_M17
(1179 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 163 6e-39
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 126 1e-27
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 95 3e-18
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 70 1e-10
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 5e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 4e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 58 4e-07
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 58 4e-07
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 54 7e-06
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 48 6e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.003
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.006
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 43 0.018
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.072
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.12
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 35 4.7
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ... 35 4.7
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 8.2
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 163 bits (397), Expect = 6e-39
Identities = 77/87 (88%), Positives = 78/87 (89%)
Frame = +2
Query: 695 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 874
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 875 CRLPDTCPPFSLREAWRFLIXHAVGIS 955
CRLPDTCPPFSLREAWRFLI HAVGIS
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGIS 88
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 126 bits (303), Expect = 1e-27
Identities = 73/120 (60%), Positives = 78/120 (65%)
Frame = +2
Query: 527 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 706
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76
Query: 707 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 886
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P LP
Sbjct: 77 ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 95.1 bits (226), Expect = 3e-18
Identities = 45/54 (83%), Positives = 47/54 (87%)
Frame = +2
Query: 713 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 874
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 70.1 bits (164), Expect = 1e-10
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +1
Query: 853 VRSPVPTLPLTGYLSAFLPSGSVALPHXSRCRYLXS 960
+RSPVPTLPLTGYLSAFLPSGSVAL H SRCRYL S
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSS 36
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 5e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -3
Query: 703 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 590
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 4e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 503 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 670
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 58.0 bits (134), Expect = 4e-07
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 602 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 775
C R Q R G +P+N I +R + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 776 IDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 874
I Q + +T+ +YK T FPL++PS +LLF P
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 58.0 bits (134), Expect = 4e-07
Identities = 24/34 (70%), Positives = 24/34 (70%)
Frame = -2
Query: 1061 PGWXXDDSYRIRXXGRXNXGVXAHSPXWSGRPTP 960
PGW DDSYRIR GR GV AHSP WS RPTP
Sbjct: 8 PGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTP 41
>UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p07168;
n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
protein CKO_pCKO2p07168 - Citrobacter koseri ATCC BAA-895
Length = 99
Score = 54.0 bits (124), Expect = 7e-06
Identities = 35/88 (39%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = -2
Query: 1061 PGWXXDDSYRIRXXGRXNXGVXAHSPXWSGRPTPEXRYLQREX*GSATLPEGRKADRYPV 882
PGW DDSYR R GV A+SP WS RP P + P+G+KA++ V
Sbjct: 8 PGWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQ--V 65
Query: 881 SG-RVGTGERTRE-LPGGNAWYLYSPVG 804
SG R G R E G + SPVG
Sbjct: 66 SGKRQGRNRRAHEGAAGEKSPASLSPVG 93
Score = 48.8 bits (111), Expect = 3e-04
Identities = 25/40 (62%), Positives = 27/40 (67%)
Frame = -1
Query: 906 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 787
+K QVSGKRQGRNRRAHEGA+ K SL PPLT
Sbjct: 60 KKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 47.6 bits (108), Expect = 6e-04
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = -2
Query: 1061 PGWXXDDSYRIRXXGRXNXGVXAHSPXWSGRPTP 960
PGW +SYRIR R GV A+SP WS RPTP
Sbjct: 8 PGWTQVNSYRIRRSSRAERGVLAYSPAWSERPTP 41
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.003
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 306 DPDMIRYIDEFGQTTTRMQ 362
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.006
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 622 HSKAVIRLSTESGDNAGKNM 681
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 42.7 bits (96), Expect = 0.018
Identities = 30/61 (49%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 816 IKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRG--ASSXLTL*VSXFXCRSSAPXWA 989
+KI VS LP ALSCS+PA RIPV PF G A S + CRS AP WA
Sbjct: 32 LKIITVSDESLPLALSCSNPAVSRIPV--PPFSLAGSVALSHSSHSGISARCRSFAPSWA 89
Query: 990 V 992
V
Sbjct: 90 V 90
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.072
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +3
Query: 501 SALMNRPTRGERRFAYW 551
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.12
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 573 ERGSGRAPNTQTASPRALADSLMQ 502
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 34.7 bits (76), Expect = 4.7
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 384 EICDAXALFVTIISCNKQVNNNNCXHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 551
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 668)
Length = 755
Score = 34.7 bits (76), Expect = 4.7
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -1
Query: 933 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 829
+R+R A RR GG+ G+R+GRNR+ + RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 8.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 712 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 590
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,532,692
Number of Sequences: 1657284
Number of extensions: 20173551
Number of successful extensions: 50670
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 47987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50624
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 117912272470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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