Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M15
         (1176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   439   e-124
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   438   e-124
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   5.0  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   8.8  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
            Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  439 bits (1082), Expect = e-124
 Identities = 215/310 (69%), Positives = 246/310 (79%), Gaps = 1/310 (0%)
 Frame = +1

Query: 124  KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 300
            K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5    KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 301  GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 480
            G LV++G+ I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65   GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124

Query: 481  SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 660
            S DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM         
Sbjct: 125  SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184

Query: 661  XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 840
                DGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGKLTGMAFRVP  +VSVVD
Sbjct: 185  QKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVD 244

Query: 841  LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEXQVVSSXFXGDXHSSIFDAAAGISLN 1020
            LTV+L KP +YE IK  +K A+EGP+KG+LGYTE  VVS+ F GD HSSIFDA+AGI L+
Sbjct: 245  LTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLS 304

Query: 1021 DNLVXLIXXY 1050
               V L+  Y
Sbjct: 305  PQFVKLVSWY 314


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
            Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  438 bits (1079), Expect = e-124
 Identities = 214/310 (69%), Positives = 246/310 (79%), Gaps = 1/310 (0%)
 Frame = +1

Query: 124  KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 300
            K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5    KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 301  GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 480
            G LV++GN I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65   GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124

Query: 481  SADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 660
            S DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM         
Sbjct: 125  SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184

Query: 661  XXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 840
                DGPS K WR GRGA  NIIP+STGAAKAVGKVIPALNGKLTGMAFRVP  +VSVVD
Sbjct: 185  QKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVD 244

Query: 841  LTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEXQVVSSXFXGDXHSSIFDAAAGISLN 1020
            LTV+L KP +YE IK  +K A+EGP+KG+LGYTE  VVS+ F GD HSSIFDA+AGI L+
Sbjct: 245  LTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLS 304

Query: 1021 DNLVXLIXXY 1050
               V L+  Y
Sbjct: 305  PQFVKLVSWY 314


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 930 ENALQRTFSCLLDLLLDGF 874
           EN++Q T  C+LD +LD F
Sbjct: 185 ENSIQTTIDCVLDFVLDVF 203


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 489 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPRNGLRVPF*E-NSNFVTIN 313
           + +G  +N  +S    +  C +C G     + ++ +P F  R  +R+P    N N  TI 
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGF--RQQMRMPCNACNGNGRTIK 210

Query: 312 NK 307
           +K
Sbjct: 211 HK 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,275,425
Number of Sequences: 5004
Number of extensions: 87396
Number of successful extensions: 256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)