Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M14
         (1177 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   3.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   5.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   7.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.8  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 529 SYSGSPVHHSICPVLL 482
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 529 SYSGSPVHHSICPVLL 482
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 350  DNPNSACGS*REPALKAIVTRVTGEPLSKAATN 252
            D+  + CG  + P LK +   + G P   + TN
Sbjct: 2666 DDFKNRCGCGKHPLLKTLNNELRGTPSDISVTN 2698


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 529 SYSGSPVHHSICPVLL 482
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 529 SYSGSPVHHSICPVLL 482
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 331 QAELGLSHVLRSAAGLTTKNISSFL 405
           QAE  LS  +   A L T+N SS L
Sbjct: 259 QAEFTLSGQVMKYAALATENFSSLL 283


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 402 PYSTQTLSDWSIC*CFWRQRINLLYFGSNTG 494
           P     LS+++ C C W Q + LL  G+  G
Sbjct: 565 PTGGDALSEFNFCGCGWPQHM-LLPKGTEAG 594


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 54  PEEEKTPLNHKPL 92
           P++E   LNHKPL
Sbjct: 254 PKQELPDLNHKPL 266


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 54  PEEEKTPLNHKPL 92
           P++E   LNHKPL
Sbjct: 146 PKQELPDLNHKPL 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,961
Number of Sequences: 336
Number of extensions: 5033
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34331301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)