Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_M13
(1123 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 191 2e-49
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 164 2e-41
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 79 1e-15
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.22
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 31 0.29
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.89
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.1
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.7
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 8.3
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 191 bits (465), Expect = 2e-49
Identities = 99/150 (66%), Positives = 115/150 (76%)
Frame = +1
Query: 223 PISGPFFGVMGAASAIIFXXXXXXXXXXXXXXXXXXMSVMRPELIMKSIIPVVMAGIIAI 402
P+ PFFGVMG +AI+F M V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 403 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 582
YGLVV+VLI+G L++ + LY GFI LGAGL+VG +GLAAGFAIGIVGDAGVRGTAQQP
Sbjct: 67 YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQP 124
Query: 583 RLFVGMILILIFAEVLGLYGLIVAIYLYTK 672
RLFV MILILIFAEVLGLYGLIVA+ L T+
Sbjct: 125 RLFVAMILILIFAEVLGLYGLIVALLLNTR 154
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 164 bits (399), Expect = 2e-41
Identities = 79/150 (52%), Positives = 103/150 (68%)
Frame = +1
Query: 223 PISGPFFGVMGAASAIIFXXXXXXXXXXXXXXXXXXMSVMRPELIMKSIIPVVMAGIIAI 402
PI FFG G ++++F + RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 403 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 582
YGLV++VLIAG + +Y L+ GFIHL AGLAVG +G+AAG+AIG+VGD GV+ +Q
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQD 126
Query: 583 RLFVGMILILIFAEVLGLYGLIVAIYLYTK 672
R+FV M+LILIFAEVLGLYGLIV + L TK
Sbjct: 127 RIFVSMVLILIFAEVLGLYGLIVGLILQTK 156
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 79.0 bits (186), Expect = 1e-15
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Frame = +1
Query: 241 FGVMGAASAIIFXXXXXXXXXXXXXXXXXXMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 420
+G++G AS + F +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 421 VLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 582
++ + + + PA + Y GF G+ VG L G +GI G + AQ
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164
Query: 583 RLFVGMILILIFAEVLGLYGLIVAIYL 663
LFV ++++ IF VLGL+GLIV + +
Sbjct: 165 SLFVKVLVVEIFGSVLGLFGLIVGLLI 191
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 484 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 663
LG V F + A + I I G + + G + PR+ ++ +IF EV+ +Y LI+AI
Sbjct: 48 LGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAIVF 107
Query: 664 YTK 672
K
Sbjct: 108 SAK 110
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.22
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -3
Query: 641 P*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 471
P RP ++A ++ PT +VP P++P MP P+A P A AP NP
Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 31.1 bits (67), Expect = 0.29
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 367 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIV 546
II +AG+IA + +++ IAG + G ++ G L LA GF I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVTS 246
Query: 547 GDAGVRGT 570
GD V T
Sbjct: 247 GDVCVSNT 254
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.5 bits (63), Expect = 0.89
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = -3
Query: 572 AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRTATTRP*MAI 393
+VP+ PA+P +P A +P P A AP+ + R AP + A + P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQP--PAAPVAPEVPSAPQRP------AAPVVPEAPSVPQRPA 564
Query: 392 IPAMTTGM-IDFMISSGLITDMAAIPVPDLA--VPEAAPKALKMIADAAPITP 243
+P + + + + + ++ ++P P +A VPEA +A AP P
Sbjct: 565 VPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVP 617
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.1
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 572 AVPRTPAS--PTMPMAKPAARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRTATTRP*M 399
A P P S P++PM PAA P P+A AP PL AG AP + A P
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP----PL----PAGMPAAPPLPPAAPAPPP 478
Query: 398 AIIPA 384
A PA
Sbjct: 479 APAPA 483
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 669 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSSTT 562
C++VD +D K + K+QY +EN N N + P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 480 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 367
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,555
Number of Sequences: 5004
Number of extensions: 68662
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -