Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M13
         (1123 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   243   2e-66
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   6.5  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  243 bits (595), Expect = 2e-66
 Identities = 124/153 (81%), Positives = 129/153 (84%)
 Frame = +1

Query: 214 ENNPISGPFFGVMGAASAIIFXXXXXXXXXXXXXXXXXXMSVMRPELIMKSIIPVVMAGI 393
           E++PI  PFFGVMGAASAIIF                  MSVMRPELIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 394 IAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 573
           IAIYGLVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 574 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 672
           QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 156


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = -2

Query: 669 CVQVDGDDKSVKTQYFSENKNKNHSDE*PRLLSSTTHACISHDAYGETGSQTRESYSQTS 490
           C+  D   +S+ TQ+    +++ HSD     L S  +A I +  + E+ ++       T 
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSDSCCLCLDS-MNAVIRN--FNESENRRNSCLGSTE 384

Query: 489 TQVDEPFVKGVVGWLLEGTSN 427
           T   +   +    ++ E +SN
Sbjct: 385 TYYSKHNTQQFTQYIPESSSN 405


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 429 NQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRH 331
           NQ  H    D  N  ++  ND+ H   + ++RH
Sbjct: 430 NQARHSSKSDNQN--NNQHNDQAHHSSKSNNRH 460


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 586 LFVGMI-LILIFAEVLGLYGLIVAIY 660
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,144
Number of Sequences: 438
Number of extensions: 4710
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37837314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)