Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M11
         (1201 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    71   6e-11
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    64   5e-09
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    50   1e-04
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    48   6e-04
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    44   0.008
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    40   0.17 
UniRef50_A2STT6 Cluster: Putative uncharacterized protein; n=1; ...    35   3.6  
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    34   6.4  
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   8.4  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 70.9 bits (166), Expect = 6e-11
 Identities = 34/43 (79%), Positives = 34/43 (79%)
 Frame = -3

Query: 782 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERPSXASQ 654
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERPS ASQ
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 64.5 bits (150), Expect = 5e-09
 Identities = 48/110 (43%), Positives = 54/110 (49%)
 Frame = +3

Query: 618 VCXXGALPLPRSLTRXARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVK 797
           +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK      
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE---I 77

Query: 798 RPXCWRFSIGSAPLXEHXKNRRSSQRWXXPTGL*RXQAFPLEAPSGALXF 947
           RP   RFSIGSAPL    K+                + FPL APS AL F
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLF 127


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 50.0 bits (114), Expect = 1e-04
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +1

Query: 841 TSIXKIDAQVRGGEXRQDYKDXRRSPWKLP 930
           TSI KIDAQVRGGE RQDYKD RR P + P
Sbjct: 24  TSITKIDAQVRGGETRQDYKDTRRFPLEAP 53



 Score = 49.6 bits (113), Expect = 2e-04
 Identities = 37/85 (43%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 774  SKRPGTVKRPXCWRFSIGSAPLXEHXKNRRSSQRWXXPTGL*RXQAFPLEAPSGALXFRX 953
            SK+  T       RFSIGSAPL    K     +           + FPLEAPS AL FR 
Sbjct: 2    SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61

Query: 954  XRLXDTC-RLSPSXXXGFLIAXAVG 1025
             RL DTC   S      FLIA AVG
Sbjct: 62   CRLPDTCPPFSLREAWRFLIAHAVG 86


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 47.6 bits (108), Expect = 6e-04
 Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 582 CINESANARGXAVCXXGALPLPRSLTRXARSFGCGERYQL-TQRR*YGYPQNQGITQ 749
           CI + A AR  AV    ALPL RS TR  RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 44.0 bits (99), Expect = 0.008
 Identities = 20/30 (66%), Positives = 21/30 (70%)
 Frame = +1

Query: 841 TSIXKIDAQVRGGEXRQDYKDXRRSPWKLP 930
           TSI K DAQ+ GGE RQDYKD RR P   P
Sbjct: 60  TSITKSDAQISGGETRQDYKDTRRFPLAAP 89


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 39.5 bits (88), Expect = 0.17
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +2

Query: 707 KAVIRLSTESGDNAGKNM 760
           KAVIRLSTESGDNAGKNM
Sbjct: 42  KAVIRLSTESGDNAGKNM 59


>UniRef50_A2STT6 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 190

 Score = 35.1 bits (77), Expect = 3.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 21  RGLLFIFLVVFXQSFASSLHLAXRLSQIAAXQQLVIIGWIASW 149
           RGL+F+ + +   S  +S+H    +   A  Q  VIIGW+A W
Sbjct: 112 RGLIFLIICLIFSSVVTSIHNQNDIIY-AIGQSFVIIGWVALW 153


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 34.3 bits (75), Expect = 6.4
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +1

Query: 385 DPDMIXYXDEXGQTTXKMQ 441
           DPDMI Y DE GQTT +MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 8.4
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 791 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 669
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,178,495
Number of Sequences: 1657284
Number of extensions: 10938432
Number of successful extensions: 22429
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22421
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 120758430771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)