Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M11
         (1201 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.76 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   1.00 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.00 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   1.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   5.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   5.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   5.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 120 LVIIGWIASWLLVVALPRRQSRVXRSLHARFGLVVL*HVSPQMLSPVNLLGVVAV 284
           +V++ WIA W+   A+P   +RV   + +   L      S Q L PV+ +  + V
Sbjct: 227 IVVMSWIAFWIKPEAIP---ARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDV 278


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 120 LVIIGWIASWLLVVALPRRQS 182
           LVI+ W++ WL   A+P R S
Sbjct: 255 LVIVSWVSFWLDQSAVPARVS 275


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 120 LVIIGWIASWLLVVALPRRQS 182
           LVI+ W++ WL   A+P R S
Sbjct: 255 LVIVSWVSFWLDQSAVPARVS 275


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 33  FIFLVVFXQSFASSLHLAXRLSQIAAXQQLVI-IGWIASWLLVVALPRRQSRVXRSL 200
           F  LVVF   F     +   L Q  A   LV+ + W + WL + A+P R + +  S+
Sbjct: 186 FSRLVVF---FRFERQIGHHLIQTFAPSTLVVMLSWFSFWLGLDAIPGRVALLVTSM 239


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 120 LVIIGWIASWLLVVALPRR 176
           +V+I W++ WL + A P R
Sbjct: 245 IVVISWVSFWLHMDASPPR 263


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 120 LVIIGWIASWLLVVALPRR 176
           +VII W++ WL   A P R
Sbjct: 234 IVIISWVSFWLNRNATPAR 252


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 120 LVIIGWIASWLLVVALPRR 176
           +VII W++ WL   A P R
Sbjct: 234 IVIISWVSFWLNRNATPAR 252


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 120 LVIIGWIASWLLVVALPRR 176
           +VII W++ WL   A P R
Sbjct: 173 IVIISWVSFWLNRNATPAR 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,664
Number of Sequences: 438
Number of extensions: 3171
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40970340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)