Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M07
         (1333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    37   0.007
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    28   3.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 36/132 (27%), Positives = 41/132 (31%), Gaps = 1/132 (0%)
 Frame = -1

Query: 751 PXPPPGXPXXGXPPXGXGXXXXXXPXRXPPPXXXXXPXRXXDRGXXTPNQPXXXXRPXPX 572
           P PPP     G PP G G      P   PPP          +     P  P     P P 
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP--------RSNAAGSIPLPPQGRSAPPP- 363

Query: 571 XXPXPRXXXXXPXPXPPXXXXARXXXXKXPPXPPDXPXEXRXEXXK-GXSTQTXTPNPXP 395
             P PR         PP    +       P  PP  P          G +++T TP P P
Sbjct: 364 --PPPRSAPSTGRQPPP--LSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP-PVP 418

Query: 394 XXPXSXXXXKPP 359
             P S     PP
Sbjct: 419 -TPPSLPPSAPP 429



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 25/116 (21%), Positives = 29/116 (25%), Gaps = 4/116 (3%)
 Frame = -1

Query: 715 PPXGXGXXXXXXPXRXPPPXXXXXPXRXXDRGXXTPNQPXXXXRPXPXXXPXPRXXXXXP 536
           PP          P R P       P           + P    RP       P       
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289

Query: 535 XPXPPXXXX----ARXXXXKXPPXPPDXPXEXRXEXXKGXSTQTXTPNPXPXXPXS 380
            P PP        A     K PP PP      R +   G  +   +  P P  P S
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/59 (25%), Positives = 15/59 (25%)
 Frame = -3

Query: 677 PPXAPXPXXXXAXQGXRPGXXNPXPTXPXXPPXPXXXPXXXXXXPKXXPXPXAXXXXPP 501
           PP  P            P      P  P  PP     P      P   P P A    PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -1

Query: 583 PXPXXXPXPRXXXXXPXPXPPXXXXARXXXXKXPPXPP 470
           P P   P P      P P PP    A       PP PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 699 PXPXGGXPXXGXPGGGXGXXP 761
           P   GG P  G PGGG G  P
Sbjct: 80  PGGPGGGPGEGFPGGGFGFDP 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.156    0.540 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,334
Number of Sequences: 5004
Number of extensions: 13518
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 731281504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)