Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M06
         (1189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    54   5e-08
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    54   5e-08
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    52   2e-07
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    37   0.006
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     31   0.41 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    28   2.2  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    28   2.9  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.9  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    27   6.8  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   6.8  

>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 30/78 (38%), Positives = 39/78 (50%)
 Frame = +2

Query: 359 LRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGXEKLIGKAIKNKIDDG 538
           L DG+ +P + LGT    P  T   V+TA+  GYR ID A IYG E  +G  IK    + 
Sbjct: 18  LADGSKIPGLGLGTWRSEPNQTKNAVKTALQYGYRHIDAAAIYGNEDEVGDGIK----ES 73

Query: 539 TVRRXXLXIMGKXWXXXH 592
            V R  + +  K W   H
Sbjct: 74  GVPRKDIWVTSKLWCNAH 91


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 29/81 (35%), Positives = 42/81 (51%)
 Frame = +2

Query: 332 SVKEVATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGXEKLIGK 511
           S  E  T+ L +G  +P I  G  +L       +V  A+D GYR IDTA +YG E + GK
Sbjct: 4   SQTESTTVTLTNGMVIPRIGFGAFMLKYNECYGLVTQALDSGYRHIDTAAVYGNEDICGK 63

Query: 512 AIKNKIDDGTVRRXXLXIMGK 574
           AI +  +   V+R  + +  K
Sbjct: 64  AIVDWCEKNNVKRTDIFLTSK 84


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 33/86 (38%), Positives = 42/86 (48%)
 Frame = +2

Query: 347 ATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGXEKLIGKAIKNK 526
           A   L +G  +P I LGT       T   V  A+  GYR IDTA+IYG EK IG+ I+  
Sbjct: 13  AYFTLPNGDKIPSIGLGTWRSGKDETKNAVCAALKAGYRHIDTAHIYGNEKEIGEGIR-- 70

Query: 527 IDDGTVRRXXLXIMGKXWXXXHRXXL 604
             +  V R  + +  K W   HR  L
Sbjct: 71  --ESGVPRTDIWVTSKLWCNAHRAGL 94


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +2

Query: 353 LKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGXEKLIGKAIKNKID 532
           +KL +G   P  A G+ ++      + V  A+  GYR ID+A +Y  E   G+AI   ++
Sbjct: 6   VKLNNGLKCPQFAYGSYMVNRTKCFDSVYAALQCGYRHIDSAQMYHNEADCGRAILKFME 65

Query: 533 DGTVRRXXLXIMGK 574
           +   +R  +    K
Sbjct: 66  ETGTKREDIWFTSK 79


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = -2

Query: 321 LASFSSAILVLYCSSVRSPVSRFCLPLSKRRCPLPGDSILTEVIFLNTKKHNMNQIIF 148
           ++SFS+ + +LY +  +S VS   +PL +    L G S+LT +I++  K+    Q ++
Sbjct: 49  ISSFSTHLNILYFNLSKSMVSFAQVPL-EEYLNLLGHSLLTSIIYVMLKRRFYEQSVY 105


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 378 MNVPSRSFKVAT-SFTLPFSLASFSSAILVLYCSSVRSPVSRFCL 247
           MN+    F + T ++TLPF + + + A++V      +S V+  CL
Sbjct: 726 MNISEGDFLIRTQAYTLPFLVLTKNKALIVRIAELSQSDVATLCL 770


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 333 LPFSLASFSSAILVLYCSSVRSPVSRFCLPLSKRRCPLPGDSILTEVIFLNTKKHNMNQI 154
           +P S  S  +  L+    +V S   +  L    + CP   D  L+ +I+L+   H+ +  
Sbjct: 58  IPLSPTSLKNPCLIFSAKNVPSISIQAYLTRILKYCPATNDVFLSVLIYLDRIVHHFHFT 117

Query: 153 IFI 145
           +FI
Sbjct: 118 VFI 120


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 372 VPSRSFKVATSFTLPFSLASFSSAILV 292
           +PS+ F++ T F  PF+   FS +++V
Sbjct: 177 LPSQRFEIVTGFLSPFNKLYFSKSLIV 203


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 422 TTEIVETAIDMGYRAIDTAYIY---GXEKLIGKAIK 520
           T   ++ A D+G    DTA IY     E ++GKAIK
Sbjct: 46  TKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIK 81


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 450 SIAVSTISVVNRGGSKAVPKAMTGMNVPSRSFKVA--TSFTLPFSLASFSS 304
           SI  STI+     GS+     +TG N P  + +V   T+ T   +L S SS
Sbjct: 99  SIITSTITTTITSGSQLYTTTITGQNTPVDTVEVVIPTAGTFTTTLTSGSS 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,745
Number of Sequences: 5004
Number of extensions: 37664
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)