Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_M04
(1152 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 31 0.40
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 29 1.2
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 28 2.1
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 28 2.8
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 27 4.9
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 27 4.9
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 6.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 6.5
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 6.5
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 8.6
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 26 8.6
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 8.6
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 8.6
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 26 8.6
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 30.7 bits (66), Expect = 0.40
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 375 TDEEDIVRKKPKN--NTIESDDEENETPTNQVLDETLELEPLTGENNHKIDEYYTNNNDV 548
T E + +R K N N I EENE T ++ T E + L E +I Y N +++
Sbjct: 505 TKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSYEVNVSEL 564
Query: 549 NG 554
NG
Sbjct: 565 NG 566
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 208 HXAMWHHHRVHPALQVPVTVPLVVAPEATQSVQGKLQS 321
H W H +HPA+ + + ++ P+ QS + QS
Sbjct: 723 HVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQS 760
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 321 WQKPITRFFASKDSDHGSTDEEDIVRKKPKNNTIESDDEENE 446
W T F D S DEED K+ K+ + DDEE +
Sbjct: 1377 WTDGSTVFDKLADDTEDSEDEEDEEPKRKKSKSDRFDDEEKD 1418
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 363 DHGSTDEEDIVRKKPKNN-TIESDDEENETPTNQVLDET 476
D GS D ED +++K +NN ++++D+++ T T D++
Sbjct: 95 DSGS-DSEDEIKEKAENNASLKNDEDDLNTKTENKTDDS 132
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 369 GSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENNHKIDEYYTNNNDV 548
G + E+I + K K N ESD + + +++ NNH+ D Y N+D
Sbjct: 403 GKSINEEITKNKQKQNFNESDLKNMASRIETFINDE-------ASNNHREDFYGVKNSDT 455
Query: 549 NGD 557
+ D
Sbjct: 456 DTD 458
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 408 KNNTIESDDEENETPTNQVLDETLELEPLTGENNHKIDEYYTNNNDV 548
+N + ++D EN L+ +L + ENN ++ Y N ++V
Sbjct: 147 RNPELTAEDAENRVQAQMPLELKCQLADIVIENNSDLETLYENIHNV 193
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 6.5
Identities = 21/83 (25%), Positives = 33/83 (39%)
Frame = +3
Query: 294 PVCPRETPKWQKPITRFFASKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDE 473
PV R+ K+ K R E + KK K+N + +TP ++ DE
Sbjct: 483 PVQRRKDGKFAKSTKRKKQKSLKPDTENQESSVKNKKAKSNV--NLQYSPKTPICKINDE 540
Query: 474 TLELEPLTGENNHKIDEYYTNNN 542
TL+ + HK + T+ N
Sbjct: 541 TLKPPTIANIAGHKQMNHLTSEN 563
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 262 TVPLVVAPEATQSVQ-GKLQSGRNPSPDSLPPR 357
+VPL AP ++QS++ G L R+PSP S PR
Sbjct: 327 SVPLP-APTSSQSLRLGSLHRSRSPSPRSGRPR 358
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +2
Query: 14 PTGPSFXSRLFSXHPVTQHXSKXXTFHVKNQSKLKSPFXQWFHVLMAS 157
PT P ++H + FH + L WFHV+ AS
Sbjct: 148 PTNPDIDENYSDRRNRSKHVTLVSFFHPSGEYILSGTSKGWFHVIDAS 195
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 348 ASKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGEN 506
AS+DS+ S E+ + + ++ SD+ E+E+ + +E E E + E+
Sbjct: 77 ASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDES 129
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 348 ASKDSDHGSTDEEDIVRKKPKNNTIESDDEENET---PTNQVLDETL-ELEP 491
++ +S+ TD+ KN+T + D E N T T ++D L E EP
Sbjct: 689 STSESEDEETDDTSQEEDNEKNSTPDEDTENNNTSSISTKSIMDRPLTEPEP 740
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 444 ETPTNQVLDETLELEPLTGENNHKIDEYYTNNN 542
E+ TN+ LEP G N HK D N N
Sbjct: 632 ESSTNEATSVGPALEPSQGANVHKSDSELDNQN 664
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 8.6
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +3
Query: 357 DSDHGSTDEEDIVRKKPKNNTIESDDEENET-PTNQVLDETLELEPLTGE-NNHKIDEYY 530
DS GS ++ + + + E DDE+N T N+ + E GE ++H +
Sbjct: 336 DSSAGSEGVDEGTSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVL 395
Query: 531 TNNNDV---NGDGHEKKTL 578
++ N V N DG + L
Sbjct: 396 SDGNSVKKMNEDGADTSLL 414
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 440 FFIVRFYGVVFWFFSHYIFFVCRAMIRVLGGKESG 336
F I + +FWFF + VC + L GK G
Sbjct: 196 FMINNLFEGLFWFFVPVCYVVCNDVFAYLCGKMFG 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,659,737
Number of Sequences: 5004
Number of extensions: 70588
Number of successful extensions: 251
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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