Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_M04
(1152 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0626 - 5445676-5446687,5447099-5447430 35 0.11
09_06_0137 - 21080263-21081894 33 0.32
09_04_0356 - 16925821-16925969,16926056-16926165,16926261-169263... 32 0.98
05_05_0299 - 23930657-23932627 31 1.7
01_03_0055 + 12074512-12076155 31 2.3
10_06_0155 + 11306808-11306956,11307157-11307418,11307496-113076... 30 4.0
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 29 5.2
10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414... 29 6.9
03_03_0162 - 14964106-14964644,14964810-14965020 29 6.9
11_06_0710 - 26492093-26493460 29 9.2
09_01_0016 - 376742-376883,377973-378964 29 9.2
07_03_0487 - 18663890-18663964,18664286-18664441,18664693-186652... 29 9.2
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522 29 9.2
>08_01_0626 - 5445676-5446687,5447099-5447430
Length = 447
Score = 35.1 bits (77), Expect = 0.11
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 357 DSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENNHKIDEYYTN 536
D D G DEE I + +NN + DDEE E ++ LDE + + + E + +DE +
Sbjct: 224 DEDEGEEDEE-IEEDEDENN--DDDDEEEEMEEDEDLDED-KNDVVEEEEDEDMDEGEDD 279
Query: 537 NNDVNGDGHEKK 572
N+ N + +K
Sbjct: 280 ENETNEEWEVRK 291
Score = 33.9 bits (74), Expect = 0.24
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 423 ESDDEENETPTNQVL--DETLELEPLTGENNHKIDEYYTNNNDVNGDGHEKKTLEEXXXX 596
E ++EE E ++ L DE ++ + GE + +I+E NND D E++ +EE
Sbjct: 201 EEEEEEEEEEEDEFLYEDENVDDDEDEGEEDEEIEEDEDENND---DDDEEEEMEEDEDL 257
Query: 597 XXXXXXXXXXXXXENLDYNSDRKRYRDEKDANEE 698
E++D D DE + NEE
Sbjct: 258 DEDKNDVVEEEEDEDMDEGED-----DENETNEE 286
>09_06_0137 - 21080263-21081894
Length = 543
Score = 33.5 bits (73), Expect = 0.32
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 208 HXAMWHHHRVHPALQVPVTVPL-VVAPEATQSVQGKLQSGRNP 333
H A+ H R HPA VP T P PE + ++ G L S +P
Sbjct: 63 HAALVDHRRAHPAAPVPATAPSEPPLPELSSALSGLLASPPSP 105
>09_04_0356 -
16925821-16925969,16926056-16926165,16926261-16926386,
16926485-16926572,16926648-16926768,16926902-16926974,
16927395-16927458,16928019-16928062,16928160-16928218,
16928771-16928870,16929043-16929146
Length = 345
Score = 31.9 bits (69), Expect = 0.98
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 315 PKWQKPITRFFASKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDE---TLEL 485
P+WQKP+ +D DE+ + + KP ++ + Q LD+ TL++
Sbjct: 40 PEWQKPLAAQRRVQDRKLQILDEDFVAKPKPTDDRDVMSEVTKTHEAIQYLDKSIATLQM 99
Query: 486 EPLTGENNHKIDE 524
E L GE K++E
Sbjct: 100 E-LAGEELKKLEE 111
>05_05_0299 - 23930657-23932627
Length = 656
Score = 31.1 bits (67), Expect = 1.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 357 DSDHGSTDEEDIVRKKPKNNT--IESDDEENETPTNQVLDETLELEPLTGENNHKIDEYY 530
D D G D++D+ + KPK + DD+E + T Q+L + + EN+ + +++
Sbjct: 204 DGD-GGEDDDDLFQVKPKGGDGGNKEDDDEEKKETEQILIDIFGKDEELDENSKFLKKFF 262
Query: 531 TNNNDVNGDGHEKK 572
+ G EKK
Sbjct: 263 LERPYLE-TGSEKK 275
>01_03_0055 + 12074512-12076155
Length = 547
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/73 (23%), Positives = 38/73 (52%)
Frame = +3
Query: 354 KDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENNHKIDEYYT 533
KDS G D+ED P +N ++ +D++++ ++V ++ + G H++ ++
Sbjct: 308 KDSSAGPEDDEDDSEDVPSSNEVDDEDDDDDDDDDEV-GPGMKSRRIYG--GHRVHHHHH 364
Query: 534 NNNDVNGDGHEKK 572
++N GH K+
Sbjct: 365 HHN-----GHHKR 372
>10_06_0155 +
11306808-11306956,11307157-11307418,11307496-11307697,
11308118-11308353
Length = 282
Score = 29.9 bits (64), Expect = 4.0
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 342 FFASKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQ 461
F S +DH + E+ + ++ +N+ IE+DD+++ + T +
Sbjct: 236 FTDSSSNDHSNGTEDSLRDEESENSKIETDDKDSNSDTEE 275
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.5 bits (63), Expect = 5.2
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 366 HGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENNHKIDEYYTNNND 545
+GS D++D + K+N E +D+E ET + E + E T ++N K E ++
Sbjct: 188 NGSADKKDKEEETEKDNEKEKEDKEEETEKDNE-KEKEDKEEETKKDNEKEKEQLMGTDE 246
Query: 546 VNGDGHEKKTLEE 584
+ ++ EE
Sbjct: 247 KEKEKEKEDENEE 259
>10_06_0139 -
11139004-11139031,11139300-11141017,11141408-11141477,
11142520-11143361
Length = 885
Score = 29.1 bits (62), Expect = 6.9
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 351 SKDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENNHKI---D 521
+K+ DHGS +E++ + + ++ D+E+ QV + PL E H I D
Sbjct: 806 TKEKDHGSEEEQNAIMSANFDEYHQTQDKESSDANKQV----GSIVPLPREQEHGILEHD 861
Query: 522 EYYTNNND 545
EY + D
Sbjct: 862 EYAPKDPD 869
>03_03_0162 - 14964106-14964644,14964810-14965020
Length = 249
Score = 29.1 bits (62), Expect = 6.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 431 VRFYGVVFWFFSHYIFFVCRAMIRV 357
+ F+ V F+FFS + FF C + R+
Sbjct: 13 LEFFLVEFYFFSRFFFFACNRLKRI 37
>11_06_0710 - 26492093-26493460
Length = 455
Score = 28.7 bits (61), Expect = 9.2
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 309 ETPKWQKPITRFFASKDSDHGSTDEEDIVRKKPKNNTIESDDEE--NETPTNQVLDE 473
E+ K +K + SK SD D E +KK KN+ + DD++ + P N DE
Sbjct: 132 ESEKKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDE 188
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 357 DSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETLELEPLTGENNH 512
D + S+D+E + + N SDD+E++ + D+ + L+P N +
Sbjct: 165 DQESDSSDDETLPALQANKNASPSDDDEDDDQESDSGDDDVLLDPALQANKN 216
>07_03_0487 -
18663890-18663964,18664286-18664441,18664693-18665295,
18665566-18665894,18665992-18666504,18667128-18667242,
18667326-18667397,18667480-18667644,18668604-18668752,
18668830-18668899,18668975-18669121,18669199-18669267,
18669366-18669416,18669537-18669629,18670122-18670211
Length = 898
Score = 28.7 bits (61), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 262 TVPLVVAPEATQSVQGKLQSGRNPSP 339
+VPL APE +V G+ Q G + P
Sbjct: 101 SVPLTTAPEGANNVNGRTQPGNHAQP 126
>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
Length = 766
Score = 28.7 bits (61), Expect = 9.2
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 363 DHGSTDEEDIVRKKPKNNTIESDDE---ENETPTNQVLDETLELEPLTGENN 509
+ +T + ++ + + N +++D E + E + V D T+ LEP+ ENN
Sbjct: 580 ESAATQDMPLLLLETEQNIVDADQEAQHQEEEELHMVDDATMTLEPMDEENN 631
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,047,023
Number of Sequences: 37544
Number of extensions: 420600
Number of successful extensions: 1369
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3503158800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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