Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M04
         (1152 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       29   0.10 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   2.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   2.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   6.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   6.7  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   8.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 0.10
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +3

Query: 354 KDSDHGSTDEEDIVRKKPKNNTIESDDEENETPTNQVLDETL-ELEPLTGENNHKI---- 518
           +D+D+G+ D  +  RKK      ++D+EE + P  Q +   L   E    EN  +I    
Sbjct: 117 EDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVEIGINF 176

Query: 519 DEYYTNNNDVNGD 557
           D+Y     +V+GD
Sbjct: 177 DKYDNIQVNVSGD 189


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 357 DSDHGSTDEEDIVRKKPKNNTIESDDE 437
           D D   +D E+I  +K   N+  SDDE
Sbjct: 87  DKDDDESDNENIKSQKEFPNSSSSDDE 113


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 455 CWCFIFFIVRFYGVVFWFF 399
           CW  +++IV     +F+FF
Sbjct: 71  CWMNVYYIVILAWAIFYFF 89


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 426 SDDEENETPTNQVLDETLELEPLTGENNHKIDEYYTNN--NDVNGDG 560
           S +  N   TN+  D  + ++P+  +  + I + Y NN  +  NG G
Sbjct: 133 SINNTNNNNTNKYKDYYIWVDPVKDDKGNPIKDKYPNNWLSVFNGTG 179


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 468 PRLG-LLVFHFLHRPILWCCFLVFFSLYLLRL*SHDQSPWRQRIW 337
           P LG  L+F  +   I  C  +V  +++     +H  +PW +R++
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVF 349


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 468 PRLG-LLVFHFLHRPILWCCFLVFFSLYLLRL*SHDQSPWRQRIW 337
           P LG  L+F  +   I  C  +V  +++     +H  +PW +R++
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVF 349


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 23  PSFXSRLFSXHPVTQHXSKXXTFHVKNQSKLKSPFXQWFHVLM 151
           P+F   L      T   ++    H KN+ K +S    W +V M
Sbjct: 502 PTFEKPLVREIEKTIDDARFIAQHAKNKDKFESVEEDWKYVAM 544


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 399 KKPKNNTIESDDEENETPTNQVL 467
           ++P N    S+++E+ETP + V+
Sbjct: 425 EEPTNTASGSNEDEDETPLDPVV 447


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 319 SGRNPSPDSLPPRTLIMALQTKKI 390
           +G+N SP+   PRT   A Q  ++
Sbjct: 12  NGKNGSPEEKRPRTAFSAEQLARL 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,707
Number of Sequences: 438
Number of extensions: 5150
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39042324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)