Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M02
         (1214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   272   8e-74
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   271   1e-73
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    27   5.3  
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    27   5.3  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   9.2  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  272 bits (666), Expect = 8e-74
 Identities = 136/202 (67%), Positives = 155/202 (76%), Gaps = 1/202 (0%)
 Frame = +1

Query: 172 LVLRASIEKGAX-VVAINDPXIGLDYMVYLFKYDSTXGRFKGSVEVQDGFLVVNGNKIAV 348
           +VLR +I  G   VVA+NDP I LDYM Y+FKYDST GRF+GSVE + G LV++G+ I V
Sbjct: 17  IVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKGGKLVIDGHSIDV 76

Query: 349 FSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVN 528
            +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS DAPMFVVGVN
Sbjct: 77  HNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVGVN 136

Query: 529 LEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLW 708
           LE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM             DGPS K W
Sbjct: 137 LEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDW 196

Query: 709 RDGRGAQQNIIPASTGAAKAVG 774
           R GRGA  NIIP+STGAAKAVG
Sbjct: 197 RGGRGASANIIPSSTGAAKAVG 218



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +2

Query: 764 KLWGKVIPALNGKLTGMAFRRP 829
           K  GKVIPALNGKLTGMAFR P
Sbjct: 215 KAVGKVIPALNGKLTGMAFRVP 236


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  271 bits (664), Expect = 1e-73
 Identities = 135/202 (66%), Positives = 155/202 (76%), Gaps = 1/202 (0%)
 Frame = +1

Query: 172 LVLR-ASIEKGAXVVAINDPXIGLDYMVYLFKYDSTXGRFKGSVEVQDGFLVVNGNKIAV 348
           +VLR A + K   VVAINDP I L+YM Y+FKYDST GRF GSVE++DG LV++GN I V
Sbjct: 17  IVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKDGKLVIDGNAIDV 76

Query: 349 FSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVN 528
            +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS DAPM+VVGVN
Sbjct: 77  HNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVN 136

Query: 529 LEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLW 708
            E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM             DGPS K W
Sbjct: 137 EEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDW 196

Query: 709 RDGRGAQQNIIPASTGAAKAVG 774
           R GRGA  NIIP+STGAAKAVG
Sbjct: 197 RGGRGASANIIPSSTGAAKAVG 218



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +2

Query: 764 KLWGKVIPALNGKLTGMAFRRP 829
           K  GKVIPALNGKLTGMAFR P
Sbjct: 215 KAVGKVIPALNGKLTGMAFRVP 236


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 731 KTSFLPLLVLPKLWGKVIPALNGKLTGMAFRRP 829
           KT    +++LP++ G V+   NGKL      RP
Sbjct: 85  KTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRP 117


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 731 KTSFLPLLVLPKLWGKVIPALNGKLTGMAFRRP 829
           KT    +++LP++ G V+   NGKL      RP
Sbjct: 86  KTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRP 118


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = -1

Query: 533 SRLTPTTNMGASALGADIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLS 354
           S+L+PT     + L A  ++     S          ++ +DS+TY     P   ++ SLS
Sbjct: 174 SQLSPTHTSTIAELAASTLSIFPSGSYAGSTFGSPSRSSIDSSTY----LPRSKSVNSLS 229

Query: 353 ENTAILLPLTTRN 315
            N +   P + ++
Sbjct: 230 SNFSARTPASNQS 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,119,662
Number of Sequences: 5004
Number of extensions: 76937
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)