Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_M01
         (1184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.98 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   3.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   3.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   5.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 603 WLWTPHWW 580
           W+WTPH W
Sbjct: 176 WIWTPHGW 183


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 268 NSPGXXVRGNVPQNELQIYTWMDATLRELTGLVKEVN 378
           N  G  V+GN     +Q+Y  +D  +R++ G   E N
Sbjct: 359 NVLGNIVQGNGDSVNVQLYGQLDLLVRKVLGFGYESN 395


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 268 NSPGXXVRGNVPQNELQIYTWMDATLRELTGLVKEVN 378
           N  G  V+GN     +Q+Y  +D  +R++ G   E N
Sbjct: 359 NVLGNIVQGNGDSVNVQLYGQLDLLVRKVLGFGYESN 395


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 591 PHWWWHSVWGC 559
           P+W WH+V  C
Sbjct: 232 PNWEWHTVGNC 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,255
Number of Sequences: 438
Number of extensions: 3099
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40367835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)