Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L23
(1149 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 437 e-121
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 427 e-118
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 426 e-118
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 380 e-104
UniRef50_A7U5W6 Cluster: DEAD-box helicase 1; n=8; Aconoidasida|... 291 2e-77
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 250 5e-65
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 243 8e-63
UniRef50_A6PWH4 Cluster: HLA-B associated transcript 1; n=6; Hom... 236 9e-61
UniRef50_UPI0000498D2C Cluster: DEAD/DEAH box helicase; n=3; Ent... 212 1e-53
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 187 4e-46
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 172 1e-41
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 157 5e-37
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 155 2e-36
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 155 2e-36
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 155 3e-36
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 154 5e-36
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 154 5e-36
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 151 4e-35
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 150 6e-35
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 149 2e-34
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 147 5e-34
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 146 7e-34
UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia intest... 143 7e-33
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 143 7e-33
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 143 9e-33
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 142 1e-32
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 139 1e-31
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 138 2e-31
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 137 4e-31
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 136 8e-31
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 136 1e-30
UniRef50_A5B712 Cluster: Putative uncharacterized protein; n=1; ... 136 1e-30
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 135 2e-30
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 135 2e-30
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 135 2e-30
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 135 2e-30
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 134 3e-30
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 134 3e-30
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 134 4e-30
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 134 5e-30
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 134 5e-30
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 134 5e-30
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 134 5e-30
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 134 5e-30
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 133 7e-30
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 133 9e-30
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 133 9e-30
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 133 9e-30
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 132 1e-29
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 132 1e-29
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 132 1e-29
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 130 7e-29
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 130 9e-29
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 129 1e-28
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 129 1e-28
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 129 2e-28
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 129 2e-28
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 129 2e-28
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 129 2e-28
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 128 2e-28
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 128 2e-28
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 128 2e-28
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 128 2e-28
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 128 3e-28
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 128 3e-28
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 128 3e-28
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 128 4e-28
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 128 4e-28
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 127 5e-28
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 127 5e-28
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 127 6e-28
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 127 6e-28
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 127 6e-28
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 126 8e-28
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 126 8e-28
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 126 1e-27
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 126 1e-27
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 126 1e-27
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 125 2e-27
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 125 2e-27
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 125 2e-27
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 125 2e-27
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 124 3e-27
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 124 4e-27
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 124 4e-27
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 124 4e-27
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 124 6e-27
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 124 6e-27
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 124 6e-27
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 124 6e-27
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 123 8e-27
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 123 1e-26
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 123 1e-26
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 123 1e-26
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 123 1e-26
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 123 1e-26
UniRef50_A4QTR1 Cluster: ATP-dependent RNA helicase DBP9; n=4; A... 123 1e-26
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 122 1e-26
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 122 2e-26
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 122 2e-26
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 122 2e-26
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 121 3e-26
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 121 3e-26
UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein; ... 121 3e-26
UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=... 121 3e-26
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 121 4e-26
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 121 4e-26
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 121 4e-26
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 121 4e-26
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 120 5e-26
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 120 7e-26
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 120 7e-26
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 120 7e-26
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 120 7e-26
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 120 9e-26
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 120 9e-26
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 119 1e-25
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 119 2e-25
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 119 2e-25
UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep... 119 2e-25
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 118 2e-25
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 118 2e-25
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 118 3e-25
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 118 3e-25
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 118 3e-25
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 118 3e-25
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 118 4e-25
UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3; Sphingo... 118 4e-25
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 118 4e-25
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 118 4e-25
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 118 4e-25
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 117 5e-25
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 117 5e-25
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 117 5e-25
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 117 7e-25
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 117 7e-25
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 116 9e-25
UniRef50_Q9FNM7 Cluster: DEAD-box ATP-dependent RNA helicase 26;... 116 9e-25
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 116 9e-25
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 116 1e-24
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 115 2e-24
UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein; ... 115 2e-24
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 115 2e-24
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 115 3e-24
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 115 3e-24
UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=... 115 3e-24
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 115 3e-24
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 115 3e-24
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 115 3e-24
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 114 4e-24
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 114 4e-24
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 114 4e-24
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 114 4e-24
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 114 5e-24
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 114 5e-24
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 113 6e-24
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 113 6e-24
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 113 8e-24
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 113 8e-24
UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box A... 113 1e-23
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 113 1e-23
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 113 1e-23
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 113 1e-23
UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1; F... 113 1e-23
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 113 1e-23
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 112 1e-23
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 112 1e-23
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 112 1e-23
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 112 1e-23
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 112 1e-23
UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helic... 112 2e-23
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 112 2e-23
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 112 2e-23
UniRef50_P44701 Cluster: ATP-dependent RNA helicase srmB homolog... 112 2e-23
UniRef50_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA helicase 48;... 111 2e-23
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 111 3e-23
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 111 3e-23
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 111 4e-23
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 111 4e-23
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 110 6e-23
UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2; Bacill... 110 6e-23
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 110 6e-23
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 110 6e-23
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 110 6e-23
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 110 6e-23
UniRef50_Q7JQN4 Cluster: LD15481p; n=7; Endopterygota|Rep: LD154... 110 6e-23
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 110 6e-23
UniRef50_A3H9E9 Cluster: DEAD/DEAH box helicase-like; n=1; Caldi... 110 6e-23
UniRef50_Q6C7X8 Cluster: ATP-dependent RNA helicase DBP10; n=3; ... 110 6e-23
UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5; Ent... 110 8e-23
UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1; U... 110 8e-23
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 109 1e-22
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 109 1e-22
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 109 1e-22
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 109 1e-22
UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=... 109 1e-22
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 109 1e-22
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 109 1e-22
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 109 2e-22
UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein; ... 109 2e-22
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 108 2e-22
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 108 3e-22
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 108 3e-22
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 108 3e-22
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 108 3e-22
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 108 3e-22
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 107 4e-22
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 107 4e-22
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 107 4e-22
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 107 4e-22
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 107 4e-22
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 107 4e-22
UniRef50_Q3LW03 Cluster: UB2 probably involved in pre-mRNA splic... 107 4e-22
UniRef50_Q5CWJ4 Cluster: Drs1p, eIF4a-1-family RNA SFII helicase... 107 4e-22
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 107 5e-22
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 107 5e-22
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 107 5e-22
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 107 5e-22
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 107 5e-22
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 107 5e-22
UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG136... 107 5e-22
UniRef50_Q2GSC7 Cluster: Putative uncharacterized protein; n=6; ... 107 5e-22
UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;... 107 5e-22
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 107 5e-22
UniRef50_A4R5B8 Cluster: ATP-dependent RNA helicase DBP10; n=2; ... 107 5e-22
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 107 7e-22
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 107 7e-22
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 107 7e-22
UniRef50_A4BBH5 Cluster: Probable ATP-dependent RNA helicase; n=... 107 7e-22
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 107 7e-22
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 107 7e-22
UniRef50_A0EIJ0 Cluster: Chromosome undetermined scaffold_99, wh... 107 7e-22
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 106 9e-22
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 106 9e-22
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 106 9e-22
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 106 9e-22
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 106 9e-22
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 106 1e-21
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 106 1e-21
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 106 1e-21
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 106 1e-21
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 106 1e-21
UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1; ... 106 1e-21
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 105 2e-21
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 105 2e-21
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 105 2e-21
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 105 2e-21
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 105 2e-21
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 105 2e-21
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 105 2e-21
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 105 2e-21
UniRef50_A4S6M9 Cluster: Predicted protein; n=3; Ostreococcus|Re... 105 2e-21
UniRef50_A7AWZ5 Cluster: DEAD/DEAH box helicase and helicase con... 105 2e-21
UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1; ... 105 2e-21
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 105 3e-21
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 105 3e-21
UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellu... 104 4e-21
UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1; ... 104 4e-21
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 104 4e-21
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 104 4e-21
UniRef50_Q6F1J3 Cluster: ATP-dependent RNA helicase; n=4; Mollic... 104 5e-21
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 104 5e-21
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 104 5e-21
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 104 5e-21
UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=... 104 5e-21
UniRef50_Q9UHL0 Cluster: ATP-dependent RNA helicase DDX25; n=111... 104 5e-21
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 103 7e-21
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 103 7e-21
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 103 7e-21
UniRef50_Q4UBP8 Cluster: RNA helicase, putative; n=4; Eukaryota|... 103 7e-21
UniRef50_P21507 Cluster: ATP-dependent RNA helicase srmB; n=82; ... 103 7e-21
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 103 9e-21
UniRef50_A6GSW1 Cluster: Putative ATP-dependent RNA helicase; n=... 103 9e-21
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 103 9e-21
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 103 9e-21
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 103 9e-21
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 103 9e-21
UniRef50_A6G4U7 Cluster: DEAD/DEAH box helicase; n=2; Plesiocyst... 103 1e-20
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 103 1e-20
UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2; G... 103 1e-20
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 103 1e-20
UniRef50_Q0UMB6 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 103 1e-20
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 102 2e-20
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 102 2e-20
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 102 2e-20
UniRef50_P09052 Cluster: ATP-dependent RNA helicase vasa; n=5; E... 102 2e-20
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 102 2e-20
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 102 2e-20
UniRef50_Q011U7 Cluster: Myc-regulated DEAD/H box 18 RNA helicas... 102 2e-20
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 102 2e-20
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 102 2e-20
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 102 2e-20
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 101 3e-20
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 101 3e-20
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 101 3e-20
UniRef50_A7QKJ8 Cluster: Chromosome chr2 scaffold_112, whole gen... 101 3e-20
UniRef50_A0C369 Cluster: Chromosome undetermined scaffold_146, w... 101 3e-20
UniRef50_Q97WT0 Cluster: ATP-dependent RNA helicase; n=4; Sulfol... 101 3e-20
UniRef50_Q6KZC2 Cluster: ATP-dependent RNA helicase; n=1; Picrop... 101 3e-20
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 101 3e-20
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 101 5e-20
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 101 5e-20
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 101 5e-20
UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein; ... 101 5e-20
UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein; ... 101 5e-20
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 101 5e-20
UniRef50_UPI00015609AE Cluster: PREDICTED: similar to DEAD (Asp-... 100 6e-20
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 100 6e-20
UniRef50_Q4U8S0 Cluster: DEAD-box family helicase, putative; n=2... 100 6e-20
UniRef50_O74393 Cluster: ATP-dependent RNA helicase mak5; n=1; S... 100 6e-20
UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2; ... 100 8e-20
UniRef50_A6FEC9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 100 8e-20
UniRef50_Q01EH4 Cluster: Ddx49 Ddx49-related DEAD box helicase s... 100 8e-20
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 100 8e-20
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 99 1e-19
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 99 1e-19
UniRef50_A7AWS5 Cluster: DEAD/DEAH box helicase and helicase con... 99 1e-19
UniRef50_Q9C8S9 Cluster: Probable DEAD-box ATP-dependent RNA hel... 99 1e-19
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 99 1e-19
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 99 1e-19
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 100 1e-19
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 100 1e-19
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 100 1e-19
UniRef50_Q3ZDP1 Cluster: Vasa-like protein; n=7; Neoptera|Rep: V... 100 1e-19
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 100 1e-19
UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;... 100 1e-19
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 100 1e-19
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 99 2e-19
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 99 2e-19
UniRef50_Q2J6D3 Cluster: DEAD/DEAH box helicase-like; n=2; Frank... 99 2e-19
UniRef50_Q4N0E9 Cluster: ATP-dependent RNA helicase, putative; n... 99 2e-19
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 99 2e-19
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 99 2e-19
UniRef50_Q4PFD9 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 99 2e-19
UniRef50_Q7S6F3 Cluster: ATP-dependent RNA helicase dbp-9; n=14;... 99 2e-19
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 99 2e-19
UniRef50_UPI0000499ECF Cluster: DEAD/DEAH box helicase; n=1; Ent... 99 2e-19
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 99 2e-19
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 99 2e-19
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 99 2e-19
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 99 2e-19
UniRef50_Q675R0 Cluster: ATP-dependent 61 kDa nucleolar RNA heli... 99 2e-19
UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1; ... 99 2e-19
UniRef50_Q4QIQ9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 99 2e-19
UniRef50_Q4QFH1 Cluster: ATP-dependent RNA helicase, putative; n... 99 2e-19
UniRef50_A7RHS2 Cluster: Predicted protein; n=1; Nematostella ve... 99 2e-19
UniRef50_A7AWJ7 Cluster: DEAD/DEAH box helicase and helicase con... 99 2e-19
UniRef50_A6RW79 Cluster: Putative uncharacterized protein; n=1; ... 99 2e-19
UniRef50_Q9V3C0 Cluster: ATP-dependent RNA helicase abstrakt; n=... 99 2e-19
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 98 3e-19
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 98 3e-19
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 98 3e-19
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 98 3e-19
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 98 3e-19
UniRef50_A2EQ41 Cluster: DEAD/DEAH box helicase family protein; ... 98 4e-19
UniRef50_Q96XQ7 Cluster: 337aa long hypothetical ATP-dependent R... 98 4e-19
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 97 6e-19
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 97 6e-19
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 97 6e-19
UniRef50_Q4JG17 Cluster: Vasa-like protein; n=1; Litopenaeus van... 97 6e-19
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 97 6e-19
UniRef50_Q1I3W1 Cluster: ATP-dependent RNA helicase RhlE, DEAD b... 97 8e-19
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 97 8e-19
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 97 8e-19
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 97 8e-19
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 97 8e-19
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 97 1e-18
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 97 1e-18
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 97 1e-18
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 96 1e-18
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 96 1e-18
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 96 1e-18
UniRef50_Q8SR01 Cluster: ATP-dependent RNA helicase DBP4; n=1; E... 96 1e-18
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 96 1e-18
UniRef50_UPI00015B617E Cluster: PREDICTED: hypothetical protein;... 96 2e-18
UniRef50_Q62J95 Cluster: ATP-dependent RNA helicase RhlE, putati... 96 2e-18
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 96 2e-18
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 96 2e-18
UniRef50_Q86XP3 Cluster: ATP-dependent RNA helicase DDX42; n=47;... 96 2e-18
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 95 2e-18
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 95 2e-18
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 95 2e-18
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 95 2e-18
UniRef50_Q54CD8 Cluster: Putative RNA helicase; n=2; Dictyosteli... 95 2e-18
UniRef50_Q9P7C7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 95 2e-18
UniRef50_Q238V7 Cluster: Type III restriction enzyme, res subuni... 95 3e-18
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 95 3e-18
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 95 3e-18
UniRef50_Q80Y44 Cluster: Probable ATP-dependent RNA helicase DDX... 95 3e-18
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 95 4e-18
UniRef50_A7CSF3 Cluster: DEAD/DEAH box helicase domain protein; ... 95 4e-18
UniRef50_A4S107 Cluster: Predicted protein; n=1; Ostreococcus lu... 95 4e-18
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 95 4e-18
UniRef50_Q4W7T8 Cluster: VASA RNA helicase; n=1; Artemia francis... 95 4e-18
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 95 4e-18
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 95 4e-18
UniRef50_Q4P5U4 Cluster: ATP-dependent RNA helicase DBP4; n=1; U... 95 4e-18
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 94 5e-18
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 94 5e-18
UniRef50_Q9NXZ2 Cluster: Probable ATP-dependent RNA helicase DDX... 94 5e-18
UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase Dbp... 94 5e-18
UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep... 94 7e-18
UniRef50_Q21EB3 Cluster: DEAD/DEAH box helicase-like protein; n=... 94 7e-18
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 94 7e-18
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 94 7e-18
UniRef50_Q9AW05 Cluster: DEAD box protein; n=1; Guillardia theta... 94 7e-18
UniRef50_Q4W7T7 Cluster: VASA RNA helicase; n=3; Daphniidae|Rep:... 94 7e-18
UniRef50_A5K5I2 Cluster: Putative uncharacterized protein; n=1; ... 94 7e-18
UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87; ... 94 7e-18
UniRef50_Q5JKF2 Cluster: DEAD-box ATP-dependent RNA helicase 40;... 94 7e-18
UniRef50_Q0UZ59 Cluster: ATP-dependent RNA helicase DBP9; n=1; P... 94 7e-18
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 93 9e-18
UniRef50_A2YDM1 Cluster: Putative uncharacterized protein; n=2; ... 93 9e-18
UniRef50_Q8SR49 Cluster: ATP-dependent rRNA helicase SPB4; n=1; ... 93 9e-18
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 93 9e-18
UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2; ... 93 1e-17
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 93 1e-17
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 93 1e-17
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 93 1e-17
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 93 1e-17
UniRef50_A5DU73 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 93 1e-17
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 93 2e-17
UniRef50_Q16JA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 93 2e-17
UniRef50_A2DSJ0 Cluster: DEAD/DEAH box helicase family protein; ... 93 2e-17
UniRef50_Q9SB89 Cluster: DEAD-box ATP-dependent RNA helicase 27;... 93 2e-17
UniRef50_Q13206 Cluster: Probable ATP-dependent RNA helicase DDX... 93 2e-17
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 92 2e-17
UniRef50_A2SJY2 Cluster: Putative ATP-dependent RNA helicase; n=... 92 2e-17
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 92 2e-17
UniRef50_A7RGX3 Cluster: Predicted protein; n=3; Eukaryota|Rep: ... 92 2e-17
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 92 2e-17
UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4; F... 92 2e-17
UniRef50_Q2BIX8 Cluster: Probable ATP-dependent RNA helicase; n=... 92 3e-17
UniRef50_A6DML6 Cluster: ATP-dependent RNA helicase; n=1; Lentis... 92 3e-17
UniRef50_A4AFV6 Cluster: ATP-dependent RNA helicase; n=3; Actino... 92 3e-17
UniRef50_Q12389 Cluster: ATP-dependent RNA helicase DBP10; n=10;... 92 3e-17
UniRef50_A2YDR2 Cluster: Putative uncharacterized protein; n=2; ... 91 4e-17
UniRef50_Q4UE18 Cluster: RNA helicase, putative; n=2; Theileria|... 91 4e-17
UniRef50_Q10202 Cluster: ATP-dependent RNA helicase dbp3; n=1; S... 91 4e-17
UniRef50_UPI0000498707 Cluster: DEAD/DEAH box helicase; n=1; Ent... 91 5e-17
UniRef50_Q6KI10 Cluster: DEAD-box ATP-dependent RNA helicase; n=... 91 5e-17
UniRef50_A0LD66 Cluster: DEAD/DEAH box helicase domain protein; ... 91 5e-17
UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma j... 91 5e-17
UniRef50_Q5VQL1-2 Cluster: Isoform 2 of Q5VQL1 ; n=2; Magnolioph... 91 7e-17
UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n... 91 7e-17
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 91 7e-17
UniRef50_O97031 Cluster: DjVLGA; n=1; Dugesia japonica|Rep: DjVL... 91 7e-17
UniRef50_A0BDD2 Cluster: Chromosome undetermined scaffold_100, w... 91 7e-17
UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=... 90 9e-17
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 90 9e-17
UniRef50_A4S3A0 Cluster: Predicted protein; n=2; Ostreococcus|Re... 90 9e-17
UniRef50_Q869K2 Cluster: Similar to Dictyostelium discoideum (Sl... 90 9e-17
UniRef50_Q1JTF7 Cluster: ATP-dependent RNA helicase, putative; n... 90 9e-17
UniRef50_Q16T16 Cluster: DEAD box ATP-dependent RNA helicase; n=... 90 9e-17
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 90 9e-17
UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A... 90 9e-17
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 90 1e-16
UniRef50_Q8IL14 Cluster: Helicase, truncated, putative; n=3; Euk... 90 1e-16
UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 90 1e-16
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 89 2e-16
UniRef50_Q4RK69 Cluster: Chromosome 2 SCAF15032, whole genome sh... 89 2e-16
UniRef50_Q0S0C5 Cluster: Possible ATP-dependent RNA helicase; n=... 89 2e-16
UniRef50_Q5FLW7 Cluster: RNA helicase; n=9; Lactobacillus|Rep: R... 89 2e-16
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 89 2e-16
UniRef50_Q014Y7 Cluster: RNA helicase-like protein; n=2; Ostreoc... 89 2e-16
UniRef50_Q7K4L8 Cluster: LD33749p; n=1; Drosophila melanogaster|... 89 2e-16
UniRef50_Q54T87 Cluster: Putative uncharacterized protein; n=1; ... 89 2e-16
UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 89 2e-16
UniRef50_A2DHK0 Cluster: DEAD/DEAH box helicase family protein; ... 89 2e-16
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 89 2e-16
UniRef50_Q8H0U8 Cluster: DEAD-box ATP-dependent RNA helicase 42;... 89 2e-16
UniRef50_Q4PDT1 Cluster: ATP-dependent RNA helicase DBP3; n=1; U... 89 2e-16
UniRef50_Q6MHS8 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 89 3e-16
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 89 3e-16
UniRef50_A1SQH8 Cluster: DEAD/DEAH box helicase domain protein p... 89 3e-16
UniRef50_A5BHG9 Cluster: Putative uncharacterized protein; n=1; ... 89 3e-16
UniRef50_Q9VX34 Cluster: CG5800-PA; n=2; Sophophora|Rep: CG5800-... 89 3e-16
UniRef50_Q4N5F8 Cluster: ATP-dependent RNA helicase, putative; n... 89 3e-16
UniRef50_A0E4U1 Cluster: Chromosome undetermined scaffold_79, wh... 89 3e-16
UniRef50_Q6BFH3 Cluster: Nucleolar RNA helicase II, putative; n=... 88 3e-16
UniRef50_Q4N215 Cluster: RNA helicase, putative; n=3; Aconoidasi... 88 3e-16
UniRef50_Q4P3W3 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 88 3e-16
UniRef50_Q0S0C7 Cluster: ATP-dependent RNA helicase; n=5; Actino... 88 5e-16
UniRef50_Q012E3 Cluster: DEAD-box protein abstrakt; n=1; Ostreoc... 88 5e-16
UniRef50_Q93382 Cluster: Putative uncharacterized protein; n=2; ... 88 5e-16
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 88 5e-16
UniRef50_A7AU89 Cluster: DEAD/DEAH box helicase family protein; ... 88 5e-16
UniRef50_A0DK92 Cluster: Chromosome undetermined scaffold_54, wh... 88 5e-16
UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, wh... 88 5e-16
UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2; ... 88 5e-16
UniRef50_Q8NHQ9 Cluster: ATP-dependent RNA helicase DDX55; n=86;... 88 5e-16
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 88 5e-16
UniRef50_UPI00015B4D1B Cluster: PREDICTED: similar to DEAD box A... 87 6e-16
UniRef50_A4EAF2 Cluster: Putative uncharacterized protein; n=1; ... 87 6e-16
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 87 6e-16
UniRef50_Q7R0K7 Cluster: GLP_154_39979_41331; n=1; Giardia lambl... 87 6e-16
UniRef50_Q54VF1 Cluster: Putative uncharacterized protein; n=1; ... 87 6e-16
UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Re... 87 6e-16
UniRef50_Q8SSD2 Cluster: ATP-DEPENDENT RNA HELICASE INVOLVED IN ... 87 6e-16
UniRef50_Q9SF41 Cluster: DEAD-box ATP-dependent RNA helicase 45;... 87 6e-16
>UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82;
Eukaryota|Rep: ATP-dependent RNA helicase WM6 -
Drosophila melanogaster (Fruit fly)
Length = 424
Score = 437 bits (1077), Expect = e-121
Identities = 209/248 (84%), Positives = 222/248 (89%), Gaps = 1/248 (0%)
Frame = +3
Query: 204 APKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQA 383
APKK+VKG+YVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQA
Sbjct: 26 APKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQA 85
Query: 384 KSGMGKTAVFVLATLQQLEPSESHV-YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVF 560
KSGMGKTAVFVLATLQQLEPS+++ +VLVMCHTRELAFQISKEYERFSKYM V+V+VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 561 FGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMR 740
FGGM IQKDEE LK+ PHIVVGTPGRILA F+LDECDKMLE LDMR
Sbjct: 146 FGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMR 205
Query: 741 RDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVK 920
RDVQEIFR+TPHGKQVMMFSATLSK+IRPVCKKFMQDPMEVYV DEAKL LHGLQQHYV
Sbjct: 206 RDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVN 265
Query: 921 LKENEKNR 944
LKENEKN+
Sbjct: 266 LKENEKNK 273
Score = 39.5 bits (88), Expect = 0.16
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +2
Query: 962 DVXEFNQVVIXVKSVQXXIXLAXXXTDXNXPXXG 1063
DV EFNQVVI VKSVQ + L+ T+ N P G
Sbjct: 280 DVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIG 313
>UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55;
Eukaryota|Rep: Spliceosome RNA helicase BAT1 - Homo
sapiens (Human)
Length = 428
Score = 427 bits (1053), Expect = e-118
Identities = 203/249 (81%), Positives = 216/249 (86%)
Frame = +3
Query: 198 EVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 377
E KK+VKGSYVSIHSSGFRDFLLKPE+LRAIVDCGFEHPSEVQHECIPQA+LGMD+LC
Sbjct: 28 EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87
Query: 378 QAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 557
QAKSGMGKTAVFVLATLQQLEP V VLVMCHTRELAFQISKEYERFSKYM V+V+V
Sbjct: 88 QAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV 147
Query: 558 FFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDM 737
FFGG+ I+KDEEVLK CPHIVVGTPGRILA FILDECDKMLE LDM
Sbjct: 148 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM 207
Query: 738 RRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
RRDVQEIFR TPH KQVMMFSATLSKEIRPVC+KFMQDPME++V DE KL LHGLQQ+YV
Sbjct: 208 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV 267
Query: 918 KLKENEKNR 944
KLK+NEKNR
Sbjct: 268 KLKDNEKNR 276
Score = 37.5 bits (83), Expect = 0.64
Identities = 19/31 (61%), Positives = 20/31 (64%)
Frame = +2
Query: 962 DVXEFNQVVIXVKSVQXXIXLAXXXTDXNXP 1054
DV EFNQVVI VKSVQ I LA + N P
Sbjct: 283 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFP 313
>UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;
Eukaryota|Rep: ATP-dependent RNA helicase DDX39 - Homo
sapiens (Human)
Length = 427
Score = 426 bits (1050), Expect = e-118
Identities = 200/251 (79%), Positives = 217/251 (86%)
Frame = +3
Query: 192 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 371
ST PKK++KGSYVSIHSSGFRDFLLKPE+LRAIVDCGFEHPSEVQHECIPQA+LGMD+
Sbjct: 25 STPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDV 84
Query: 372 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 551
LCQAKSGMGKTAVFVLATLQQ+EP V VLVMCHTRELAFQISKEYERFSKYM V+V
Sbjct: 85 LCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKV 144
Query: 552 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 731
SVFFGG+ I+KDEEVLK CPH+VVGTPGRILA F+LDECDKMLE L
Sbjct: 145 SVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQL 204
Query: 732 DMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQH 911
DMRRDVQEIFR TPH KQ MMFSATLSK+IRPVC+KFMQDPMEV+V DE KL LHGLQQ+
Sbjct: 205 DMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY 264
Query: 912 YVKLKENEKNR 944
YVKLK++EKNR
Sbjct: 265 YVKLKDSEKNR 275
Score = 35.9 bits (79), Expect = 2.0
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 962 DVXEFNQVVIXVKSVQXXIXLAXXXTDXNXP 1054
DV EFNQV+I VKSVQ + LA + N P
Sbjct: 282 DVLEFNQVIIFVKSVQRCMALAQLLVEQNFP 312
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 380 bits (935), Expect = e-104
Identities = 178/242 (73%), Positives = 199/242 (82%)
Frame = +3
Query: 219 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 398
VK YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMG
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
Query: 399 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 578
KTAVFVL+TLQQ+EPS V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 579 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEI 758
+ +++LK CPHIVVGTPGR+LA FILDECDKMLESLDMRRDVQEI
Sbjct: 156 KIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEI 215
Query: 759 FRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
F+ TPH KQVMMFSATLSKEIRPVCKKFMQDPME+YV DEAKL LHGL QHY+KL E EK
Sbjct: 216 FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 275
Query: 939 NR 944
R
Sbjct: 276 TR 277
>UniRef50_A7U5W6 Cluster: DEAD-box helicase 1; n=8;
Aconoidasida|Rep: DEAD-box helicase 1 - Plasmodium
falciparum
Length = 457
Score = 291 bits (714), Expect = 2e-77
Identities = 145/263 (55%), Positives = 184/263 (69%), Gaps = 21/263 (7%)
Frame = +3
Query: 219 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 398
++GSY ++H+ GF+DF LKPE+LRAI + GFEHPSEVQ E IP A+ G DILCQAKSGMG
Sbjct: 45 MRGSYATVHTGGFKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMG 104
Query: 399 KTAVFVLATLQQLEPSESH--------------------VYVLVMCHTRELAFQISKEYE 518
KTAVFVL+ LQQL+ +E+ V L + HTRELA+QI E++
Sbjct: 105 KTAVFVLSILQQLDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFD 164
Query: 519 RFSKYMSGVRVSVFFGGMPIQKDEEVLKTA-CPHIVVGTPGRILAXXXXXXXXXXXXXXF 695
RFSKY+ VR V +GG+ + K ++ K PHI++GTPGRILA F
Sbjct: 165 RFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTPGRILALIREKYLITDKIQHF 224
Query: 696 ILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXD 875
+LDECDK LE LDMR DVQ+IF +TP KQVM FSAT++KE+R VCKKF+Q+P+E+++ D
Sbjct: 225 VLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDD 284
Query: 876 EAKLKLHGLQQHYVKLKENEKNR 944
EAKLKLHGL QHYVKL+E +K R
Sbjct: 285 EAKLKLHGLLQHYVKLQEKDKTR 307
>UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7;
Trypanosomatidae|Rep: RNA helicase, putative -
Leishmania major
Length = 435
Score = 250 bits (612), Expect = 5e-65
Identities = 126/244 (51%), Positives = 163/244 (66%), Gaps = 4/244 (1%)
Frame = +3
Query: 225 GSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 404
G++ ++ GF+DF LK E+ AI + GFEHPSEVQH+ +P+A+LG DIL QAKSGMGKT
Sbjct: 28 GTHSAVALGGFQDFCLKSELANAIRENGFEHPSEVQHQALPKAMLGADILAQAKSGMGKT 87
Query: 405 AVFVLATLQQLE--PSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 572
AVFV A L+Q+E P Y +V+ H RELA+QI +E++RFSKY+ VFFGG+
Sbjct: 88 AVFVFALLEQVEKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGVFFGGI 147
Query: 573 PIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQ 752
P ++ + LK P I+VGTPGR+ A F++DE D+ LE + MRRDVQ
Sbjct: 148 PEDENVKQLKKEVPAIIVGTPGRMKALIQNKAFDTTHVKWFVVDEFDRCLEDVKMRRDVQ 207
Query: 753 EIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKEN 932
EIF P KQVMMFSAT++ E+R V KKFM+D E+YV AKL LHGL Q Y+ + E
Sbjct: 208 EIFMKLPKEKQVMMFSATMTDELRDVAKKFMKDATEIYVDQRAKLTLHGLAQFYMNVTEP 267
Query: 933 EKNR 944
EK R
Sbjct: 268 EKTR 271
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 243 bits (594), Expect = 8e-63
Identities = 121/252 (48%), Positives = 162/252 (64%), Gaps = 3/252 (1%)
Frame = +3
Query: 192 STEVAP-KKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 368
+ AP +K +G HSS F DF LK ++LR++ + GFE PSEVQH+CIP A+ G D
Sbjct: 19 ANSTAPVQKHAQGFNTGGHSS-FNDFSLKQDLLRSVKEAGFERPSEVQHQCIPNAIHGKD 77
Query: 369 ILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVR 548
+LCQAK+G GKTAVFVL+ L QL LV+CHTRELAFQI E++R K+ + +
Sbjct: 78 VLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKF-TNFK 136
Query: 549 VSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILA--XXXXXXXXXXXXXXFILDECDKML 722
V +GG+ D LKT PHI+V TPGR L+ FI+DECD++L
Sbjct: 137 VKAVYGGVEESVDIHTLKTKKPHILVATPGRCLSLIKAKPSVIETQNIEYFIIDECDRVL 196
Query: 723 ESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGL 902
S MR DVQ IF P KQVMMFS T+S E + C+KF+QD +E++V D +KL LHGL
Sbjct: 197 SSNKMRSDVQNIFYELPRKKQVMMFSGTMSDESKKTCRKFLQDQIEIFVEDNSKLVLHGL 256
Query: 903 QQHYVKLKENEK 938
+Q+++K++E +K
Sbjct: 257 EQYHIKIEEKQK 268
>UniRef50_A6PWH4 Cluster: HLA-B associated transcript 1; n=6; Homo
sapiens|Rep: HLA-B associated transcript 1 - Homo
sapiens (Human)
Length = 197
Score = 236 bits (577), Expect = 9e-61
Identities = 123/170 (72%), Positives = 132/170 (77%), Gaps = 28/170 (16%)
Frame = +3
Query: 198 EVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 377
E KK+VKGSYVSIHSSGFRDFLLKPE+LRAIVDCGFEHPSEVQHECIPQA+LGMD+LC
Sbjct: 28 EAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC 87
Query: 378 QAKSGMGKTAVFVLATLQQLEP-------SESH---------------------VYVLVM 473
QAKSGMGKTAVFVLATLQQLEP +SH V VLVM
Sbjct: 88 QAKSGMGKTAVFVLATLQQLEPVTGQVCFCDSHFPRGDNEELHLPYVSVYFLPKVSVLVM 147
Query: 474 CHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIV 623
CHTRELAFQISKEYERFSKYM V+V+VFFGG+ I+KDEEVLK CPHIV
Sbjct: 148 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 197
>UniRef50_UPI0000498D2C Cluster: DEAD/DEAH box helicase; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 419
Score = 212 bits (518), Expect = 1e-53
Identities = 109/244 (44%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Frame = +3
Query: 222 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 401
K +YV S F++ LK EI+++I DCGFEHPSEVQ + IP+A+L DILCQAKSGMGK
Sbjct: 26 KDTYVGTVS--FQEMGLKKEIMQSITDCGFEHPSEVQSQVIPKALLRQDILCQAKSGMGK 83
Query: 402 TAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYM-----SGVRVSVFFG 566
TAVFVL+ L Q HV +V+CHTRELA Q+ E++R K + ++ + + G
Sbjct: 84 TAVFVLSILNQGLFLGDHVSAIVICHTRELARQVQNEFDRMKKRLVESIGKDIQTASYIG 143
Query: 567 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRD 746
G P D + LK P I+VGTPGR+ + F++DECDK+L S D
Sbjct: 144 GNPESNDVDDLKNRKPTIIVGTPGRLASLNNSGALDLSKLDTFVIDECDKILSS-KSELD 202
Query: 747 VQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
+ +F ++ KQVMMFSAT+S++ + +C+K++++P EV++ D KL LHGL + KL+
Sbjct: 203 IMSLFMSSSKNKQVMMFSATISEQNKALCRKYLKNPFEVFIDDGEKLFLHGLHLYSKKLQ 262
Query: 927 ENEK 938
+ EK
Sbjct: 263 DMEK 266
>UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_12,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 471
Score = 187 bits (456), Expect = 4e-46
Identities = 99/231 (42%), Positives = 139/231 (60%), Gaps = 4/231 (1%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F++F LK E+LRA+ + GFEHP+ VQ E + A+LG ++CQAK+G GKTAVFVL L
Sbjct: 73 SQFKNFGLKEELLRAVKEAGFEHPTRVQAESLTNALLGEQLICQAKAGTGKTAVFVLTVL 132
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFF-GGMPIQKDEEVLKT 605
+ + V LV+ HTRELA Q E+ R K+M V+V F+ GG P+ + + ++T
Sbjct: 133 NTINTESNKVECLVITHTRELAQQARDEFLRLGKFMKSVKVECFYGGGEPVSVNIQTIET 192
Query: 606 ACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
P IVVGTPGR+ FILDE D M+E L+MR+D+Q+IF +P K
Sbjct: 193 VKPQIVVGTPGRLKDLICERKALKVDRLKYFILDEADTMIEDLNMRKDIQDIFLKSPQEK 252
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVY--VXDEAKLKLHGLQQHYVKLKE 929
Q M FSAT ++ R K+F+ D +Y +L L L+Q+Y+K+ E
Sbjct: 253 QFMAFSATFTESSRTSLKRFIADNKHIYEITIKPEQLFLDKLKQYYMKMPE 303
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 172 bits (419), Expect = 1e-41
Identities = 84/228 (36%), Positives = 138/228 (60%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F +F + E+L+AI D GFE P+ +Q IPQ + G D+ QA++G GKTA F + +++
Sbjct: 7 FAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIER 66
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L+P +V LV+ TRELA Q ++E+ R KY G+ V +GG PI++ LK
Sbjct: 67 LDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALK-GTV 125
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+V+GTPGR++ FILDE D+ML+ + R D+++IFR+TP +Q ++
Sbjct: 126 QVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLD-MGFREDIEDIFRDTPKDRQTIL 184
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+ + I + ++F +DP V + +L + ++Q Y++++E +K
Sbjct: 185 FSATMPQPILDITRRFQRDPQFVKI-TRKELTVPQIEQTYIEVRERDK 231
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 157 bits (381), Expect = 5e-37
Identities = 84/205 (40%), Positives = 110/205 (53%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L IL+A+ D GFE PS +Q CIP + G D+L A++G GKTA F L L Q
Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++PSE H +LVM TRELA Q++ E F KY G R+ +GG LK
Sbjct: 67 IDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGA- 125
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+VVGTPGRIL +LDE D+ML + DV+ + P Q +
Sbjct: 126 QVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLR-MGFIDDVETVMAELPENHQTAL 184
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYV 869
FSAT+ + IR + K+FM DP EV +
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKI 209
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 155 bits (377), Expect = 2e-36
Identities = 87/227 (38%), Positives = 121/227 (53%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D LK +LR I GFE PS +Q I + G D++ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
LE LV+ TRELA QI K YM G GG ++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVVGTPGR+ F+LDE D+ML S + + EIF+ QV++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEML-SRGFKDQIYEIFQKLNTSIQVVL 212
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENE 935
SAT+ ++ V KKFM+DP+ + V E +L L G++Q Y+ ++ E
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREE 258
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 155 bits (376), Expect = 2e-36
Identities = 89/249 (35%), Positives = 138/249 (55%), Gaps = 4/249 (1%)
Frame = +3
Query: 204 APKKEVKGSYVSI---HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDIL 374
AP K+++ + S F DF L+ E+L I GFE PS +Q + IP A+ G DIL
Sbjct: 18 APPKDLRPQTEDVTATQGSRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDIL 77
Query: 375 CQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVS 554
+AK+G GKTA F++ TL ++ S SH+ L++ TRELA Q S+ + ++ ++V
Sbjct: 78 ARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVM 137
Query: 555 VFFGGMPIQKDEEVLKTACP-HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESL 731
+ GG ++ D +L+ P HI+VGTPGRIL F++DE DK+L S
Sbjct: 138 ITTGGTTLRDD--ILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLL-SE 194
Query: 732 DMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQH 911
D +++ P +QVM+FSAT ++ + M P E+ + DE LK G+ Q+
Sbjct: 195 DFMPVIEQTLALCPQERQVMLFSATFPWTVKEFKDQHMVQPYEINLMDELTLK--GVTQY 252
Query: 912 YVKLKENEK 938
Y ++E++K
Sbjct: 253 YAYVEESQK 261
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 155 bits (375), Expect = 3e-36
Identities = 89/247 (36%), Positives = 135/247 (54%), Gaps = 3/247 (1%)
Frame = +3
Query: 207 PKKEVK---GSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 377
PKK+ + ++ + F DF LK E+L I + GFE PS +Q E IP A+ G DIL
Sbjct: 29 PKKDTRPQTDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILA 88
Query: 378 QAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 557
+AK+G GKTA FV+ TL++++P + + L+M TRELA Q S+ K+ G+ V
Sbjct: 89 RAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-CGISCMV 147
Query: 558 FFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDM 737
GG + +D+ + HI+VGTPGR+L FI+DE DKML S D
Sbjct: 148 TTGGTNL-RDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML-SRDF 205
Query: 738 RRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
+ +++I P Q ++FSAT ++ K + P E+ + +E LK G+ Q+Y
Sbjct: 206 KTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLK--GITQYYA 263
Query: 918 KLKENEK 938
++E +K
Sbjct: 264 FVEERQK 270
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 154 bits (373), Expect = 5e-36
Identities = 79/228 (34%), Positives = 127/228 (55%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L EI AI++ GFE S +Q E IP + G DI+ A++G GKTA F + T++
Sbjct: 11 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIEL 70
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
LE H+ L++C TREL Q+S+++ + KY V +GG I++ L+ P
Sbjct: 71 LEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN-P 129
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
IV+ TPGR++ +LDE D+ML+ + R D++ I ++TP +Q +M
Sbjct: 130 QIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLD-MGFREDMEFILKDTPADRQTIM 188
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT++ ++ + KKF P + V + KL ++Q Y +++EN K
Sbjct: 189 FSATMTDDVLTLMKKFQNHPQIIDVTHQ-KLSAPKIEQIYYEIQENAK 235
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 154 bits (373), Expect = 5e-36
Identities = 83/205 (40%), Positives = 113/205 (55%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D LK IL A+ D G+E PS +Q ECIP + G D+L A++G GKTA F L LQ
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L+P +LV+ TRELA Q+++ FSK+M GV V +GG L+ P
Sbjct: 68 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-P 126
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
IVVGTPGR+L +LDE D+ML + DV+ I P G Q +
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTAL 185
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYV 869
FSAT+ + IR + ++FM++P EV +
Sbjct: 186 FSATMPEAIRRITRRFMKEPQEVRI 210
>UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1;
Methanospirillum hungatei JF-1|Rep: DEAD/DEAH box
helicase-like - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 531
Score = 151 bits (365), Expect = 4e-35
Identities = 72/228 (31%), Positives = 131/228 (57%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L P I++AI D G+E P+ +Q E IP + G D+ QA +G GKTA F + ++
Sbjct: 6 FSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIEL 65
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+P+ +V +V+C +RELA Q+ E + + + G+ + +GG PI++ + L
Sbjct: 66 CQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSRGV- 124
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
I++GTPGR++ +LDE D+ML+ + R D++EI + P +Q ++
Sbjct: 125 QIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLD-MGFREDIEEILSHIPKERQTVI 183
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
SAT EI + ++F ++P++V + + +L + ++Q+Y++++E K
Sbjct: 184 LSATFPPEILDISRRFQKNPIDVKMVHQ-ELTVPQIEQYYIEVREPAK 230
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 150 bits (364), Expect = 6e-35
Identities = 74/228 (32%), Positives = 132/228 (57%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D + PEI +A+ D GFE S +Q IPQ + D+ QA++G GKTA F + L+
Sbjct: 6 FKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLEN 65
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ ++++ +++C TRELA Q+++E + S Y+ + V +GG PI + + L+
Sbjct: 66 IDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKGV- 124
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
I++GTPGR++ ILDE D+ML+ + R D++ I + P+ +Q ++
Sbjct: 125 QIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLD-MGFREDIEYILEDIPYERQFLL 183
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSATL +EI + +++ +P E+ + +L ++Q Y ++KE+ K
Sbjct: 184 FSATLPQEILQLAQRYQTNP-EIVKVTKHELTTPDVEQKYFEVKEDMK 230
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 149 bits (360), Expect = 2e-34
Identities = 79/228 (34%), Positives = 128/228 (56%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D L PE++ AI G+ + +Q + IP + G D+ QA++G GKTA F + ++
Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ S + L++C TRELA Q+ E ++ SK+ G+RV +GG I++ LK A
Sbjct: 63 VDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLK-AGA 121
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVVGTPGRI+ ILDE D+ML ++ R D++ I P +Q ++
Sbjct: 122 HIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEML-NMGFREDIELILTRLPEERQTVL 180
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSATL+ I + K+F +P E+ + +L + ++Q Y +K ++K
Sbjct: 181 FSATLAPPILALAKRFQNNP-EIIKIERKELTISTVEQFYYLVKNSQK 227
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 147 bits (356), Expect = 5e-34
Identities = 76/228 (33%), Positives = 135/228 (59%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
FRD L ++L+A+ D GFE PS +Q + IP + G D++ QA++G GKTA F + +++
Sbjct: 8 FRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIVER 67
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L P + V LV+ TRELA Q+++E + ++ + V+ +GG I++ L+
Sbjct: 68 LVPGQRAVQALVLTPTRELAIQVAEEITKIGRH-ARVKTIAIYGGQSIERQIRSLRFGV- 125
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+V+GTPGRIL +LDE D+ML+ + D+++I +NTP +Q ++
Sbjct: 126 DVVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLD-MGFIEDIEKILQNTPAERQTLL 184
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+ EIR + ++M+DP+ + V + +L + + Q++ +++ + K
Sbjct: 185 FSATMPPEIRRLAGRYMRDPITISVTPQ-QLTVPQIDQYFCEVRPSFK 231
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 147 bits (355), Expect = 7e-34
Identities = 77/228 (33%), Positives = 131/228 (57%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L P I+RA+ + GFE + +Q + IP A+ G D++ QA++G GKTA F + ++
Sbjct: 4 FTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEA 63
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ P+ V LV+ TRELA Q+++E R K + G+R +GG + + L+ P
Sbjct: 64 IRPTSKGVQGLVVVPTRELAVQVAEELTRIGK-VRGIRSVAIYGGQDFRSQVKALE-ELP 121
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVVGTPGR+L +LDE DKML+ + + ++I + P +Q ++
Sbjct: 122 HIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLD-MGFIDEAEKILKKLPERRQTLL 180
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSATLS ++ + +K+++DP E+ +E + + Q+Y+++ E +K
Sbjct: 181 FSATLSPPVQMLARKYLKDP-ELIEFEEEGITVPTTVQYYIEMPEKQK 227
>UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia
intestinalis|Rep: GLP_15_13424_14974 - Giardia lamblia
ATCC 50803
Length = 516
Score = 143 bits (347), Expect = 7e-33
Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 4/232 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF L+ E+L+AI+ GFE PS+VQ IP A+ D++CQAKSG GKTAVFVL+ L
Sbjct: 130 FSDFNLREEVLQAIISNGFESPSDVQSMAIPPALEHKDVICQAKSGKGKTAVFVLSLLHM 189
Query: 435 LEPSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVF--FGGMPIQKDEEVLK 602
++P + V LV+C+T ELA QI KE+ RF+ + ++ + GG+ + LK
Sbjct: 190 IDPQAAPHKVQALVLCNTHELAMQIYKEFTRFAINLPDIKDKILCAIGGVTVSLHVRALK 249
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
+ I VGT GR+ +LDE D + + D + + + P
Sbjct: 250 SKDVSIAVGTIGRVSDLVERGALDLSFIKYLVLDEFDALFKEEDNFKKIAGLISKMPATH 309
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
Q ++F+AT ++ + ++D + D+ +L L GL Q+Y E +K
Sbjct: 310 QTLLFTATFTEHSEKFARSILRDGYVAILVDDKQLVLTGLMQYYFNAPEEKK 361
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 143 bits (347), Expect = 7e-33
Identities = 78/228 (34%), Positives = 128/228 (56%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
FR+ L +L+++ GFE + +Q E IP A+ G DI+ QA++G GKTA F L L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ + V +V+ TRELA Q+ +E + K+ VR+ +GG I + LK P
Sbjct: 64 VDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKH-P 121
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HI+VGTPGRIL +LDE D+ML ++ D++ I + P Q ++
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEML-NMGFIEDIEAILTDVPETHQTLL 180
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+ IR + ++FM +P + V + ++ + +QQ Y++++E +K
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAK-EVTMPNIQQFYLEVQEKKK 227
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 143 bits (346), Expect = 9e-33
Identities = 73/200 (36%), Positives = 114/200 (57%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D L+ E+L+AI + GF PS +Q IP+ + G D++ QA++G GKTA F L LQ+
Sbjct: 7 FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ ++ V LV+C TRELA Q++ +K++ GVR+ +GG PI+ L+
Sbjct: 67 IDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGA- 125
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+VVGTPGRIL +LDE D+ML+ + R D++ I P Q
Sbjct: 126 QVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLD-MGFREDIERILSEMPEWVQSAF 184
Query: 795 FSATLSKEIRPVCKKFMQDP 854
FSAT+ I + ++F+++P
Sbjct: 185 FSATMPDGILELARRFLREP 204
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 142 bits (345), Expect = 1e-32
Identities = 73/205 (35%), Positives = 116/205 (56%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L +++A+ G+E PS +Q IP + G D+L QA++G GKTA F L L +
Sbjct: 17 FADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTR 76
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ VLV+ TRELA Q+++ ++R++ +SG RV +GG + LK
Sbjct: 77 TVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGV- 135
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
H++VGTPGR++ +LDE D+ML + DV+E+ R P +QV +
Sbjct: 136 HVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLR-MGFIEDVEEVLRKLPASRQVAL 194
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYV 869
FSAT+ +IR + + ++QDP+EV +
Sbjct: 195 FSATMPPQIRRIAQTYLQDPIEVTI 219
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 139 bits (336), Expect = 1e-31
Identities = 75/233 (32%), Positives = 129/233 (55%), Gaps = 1/233 (0%)
Frame = +3
Query: 243 HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA 422
+ +GF DF IL ++ + G+++P+ +Q IP+ +LG D+L QA++G GKTA F L
Sbjct: 49 NENGFLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALP 108
Query: 423 TLQQL-EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
+++L + E + VLVM TRELA Q+++ ++ +S + + +GG + L
Sbjct: 109 LIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYAL 168
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
K +VVGTPGRI+ +LDE D+ML ++ D++ I P
Sbjct: 169 KRKV-DVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEML-NMGFLEDIEWIIDQLPKN 226
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
KQ+++FSAT+ EIR + KK++ DP E+ + K + + Q ++ ++ + K
Sbjct: 227 KQMVLFSATMPNEIRNIAKKYLNDPAEILI-KSVKKETQLISQKFLYVQRHHK 278
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 138 bits (335), Expect = 2e-31
Identities = 80/237 (33%), Positives = 125/237 (52%)
Frame = +3
Query: 234 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 413
+S S+GF L +LRAI + G+E PS +Q + IP + G D+L A++G GKTA F
Sbjct: 1 MSESSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAF 60
Query: 414 VLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
L L + + VLV+ TRELA Q++ E +SK+ S V+V+ +GG
Sbjct: 61 TLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFR 120
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
LK P VVGTPGR++ +LDE D+ML + DV + P
Sbjct: 121 ALKQG-PQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLR-MGFIDDVDWVLDQVP 178
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNR 944
+Q+ +FSAT+ K+I+ V +K +++P E+ + + ++Q Y +K +KN+
Sbjct: 179 EKRQIALFSATMPKQIKAVAEKHLREPTEIRIKSKTATN-ESIEQKYWLVKGVDKNQ 234
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 137 bits (332), Expect = 4e-31
Identities = 74/228 (32%), Positives = 129/228 (56%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F++ L E+++AI GFE + +Q + IP ++ D++ QA++G GKTA F + +++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK 63
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ S V LV+ TRELA Q+S+E + + VRV +GG I++ LK P
Sbjct: 64 VNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRVRVLPIYGGQDIERQIRALKKH-P 121
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
H++VGTPGRI+ +LDE D+ML ++ D++ I + P +Q ++
Sbjct: 122 HVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEML-NMGFIEDIEAILSHVPAERQTLL 180
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+ IR + ++FM +P E+ ++ + +QQ+Y+++ E +K
Sbjct: 181 FSATMPDPIRRIAERFMNEP-ELVKVKAKEMTVPNIQQYYLEVHEKKK 227
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 136 bits (330), Expect = 8e-31
Identities = 75/228 (32%), Positives = 124/228 (54%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + + EI +AI++ GFE PS +Q + IP + G D++ QA++G GKTA F + +++
Sbjct: 8 FNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVVEK 67
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ HV L++ TRELA Q+S E ++ SK+ +R +GG I + LK
Sbjct: 68 VSTGR-HVQALILTPTRELAIQVSGEIQKLSKHKK-IRTLPIYGGQSIVHQIKALKQGV- 124
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+V+GTPGRI+ ILDE D+ML+ + D++ I R + +Q ++
Sbjct: 125 QVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLD-MGFIDDIESILRQVKNERQTLL 183
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+ I+ + +K+M DP V + + ++ + Q Y K+ E K
Sbjct: 184 FSATMPPAIKKLSRKYMNDPQTVSI-NRREVTAPSIDQFYYKVLERNK 230
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 136 bits (329), Expect = 1e-30
Identities = 77/228 (33%), Positives = 126/228 (55%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F +F + +I RA+ D GFE + +Q +P + GMD++ +A++G GKTA F + L+
Sbjct: 6 FSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLEN 65
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
LE +E L++C TREL Q+S+E +R KYM V+V +GG I L+
Sbjct: 66 LE-AERVPQALIICPTRELCLQVSEEIKRIGKYMK-VKVLAVYGGQSIGNQIAQLRRGV- 122
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
H++V TPGR++ +LDE D+ML ++ D++ I + P +Q M+
Sbjct: 123 HVIVATPGRLIDHIERGTVDLGGISTVVLDEADEML-NMGFIDDIERILSHVPERRQTML 181
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+SK I + +K+M++P + V + K + + Y K +E +K
Sbjct: 182 FSATVSKPILRIARKYMRNPQVMRVEKKHSPK---IDEFYFKTREEDK 226
>UniRef50_A5B712 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 304
Score = 136 bits (328), Expect = 1e-30
Identities = 64/92 (69%), Positives = 71/92 (77%)
Frame = +3
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
PHIVVGTPGRILA ILDECD+M ESLDMRRDVQEIF+ P+ KQVM
Sbjct: 200 PHIVVGTPGRILALAGDKDLALKNMRNLILDECDEMFESLDMRRDVQEIFKTAPYDKQVM 259
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKL 887
MFSATLSK IRPVCKKFMQDPME+Y+ D+A+L
Sbjct: 260 MFSATLSKGIRPVCKKFMQDPMEIYIDDKAEL 291
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 135 bits (327), Expect = 2e-30
Identities = 75/217 (34%), Positives = 117/217 (53%), Gaps = 1/217 (0%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLEPS 446
L +L+AI D GFE PS++Q E IPQ + D++ A++G GKTA F LQ ++ S
Sbjct: 8 LNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPLLQNIDAS 67
Query: 447 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 626
L++ TREL QI+ E + ++K++ GVRV +GG IQ+ + IVV
Sbjct: 68 SKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSNIQEQAREISRGA-QIVV 126
Query: 627 GTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSAT 806
TPGR+ +LDE D+ML ++ D+ I +TP K +FSAT
Sbjct: 127 ATPGRMQDMMRRRMVDITKLSYCVLDEADEML-NMGFYEDITNILADTPEDKLTWLFSAT 185
Query: 807 LSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
+ +E+ + K+FM DP+E+ V + + + ++YV
Sbjct: 186 MPREVARIAKEFMHDPLEITVGHKNEGAKNVSHEYYV 222
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 135 bits (326), Expect = 2e-30
Identities = 77/230 (33%), Positives = 127/230 (55%), Gaps = 2/230 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D LK +L+AI D GFE PS++Q E IP A+ G DI+ QA++G GKTA F A +
Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65
Query: 435 LEPS--ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
+ S + L++ TRELA Q+++E R K+ + V +GG PI + LK
Sbjct: 66 ADFSGKKKSPKALILAPTRELAIQVNEELVRLGKH-EKLSVLPIYGGQPIDRQIRALKNG 124
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
IVVGTPGR+L +LDE D+ML ++ D++EI ++ +Q
Sbjct: 125 V-DIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEML-NMGFIDDLEEIVKSLKTDRQT 182
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
++FSAT+ +I+ + + +M++ + ++ L + ++Q Y ++K ++
Sbjct: 183 LLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDR 232
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 135 bits (326), Expect = 2e-30
Identities = 69/208 (33%), Positives = 112/208 (53%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
+ GF + P +L AI G+E PS +Q + IP + G D++ QA++G GKTA F L
Sbjct: 22 TGGFAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPM 81
Query: 426 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L +++P+ +L++ TRELA Q++ +E ++ + GV V +GG P+ + L+
Sbjct: 82 LSRIDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQ 141
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
I+V TPGR+ +LDE D+ML+ L D++ IF P +Q
Sbjct: 142 GA-QILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLK-LGFMEDLEVIFAALPESRQ 199
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYV 869
++FSATL IR + +K + +P V +
Sbjct: 200 TVLFSATLPHSIREIAEKHLHEPQHVKI 227
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 135 bits (326), Expect = 2e-30
Identities = 70/228 (30%), Positives = 120/228 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L ++LR I GFE PS +Q + I +LG D+L QA+SG GKT F + LQ+
Sbjct: 58 FEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQR 117
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++P++ V+++ RELA QI + +Y++ + GG Q+ E K
Sbjct: 118 IDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLN-IEAFCCIGGTSTQETREKCKQGV- 175
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HI++ TPGR++ ++DE D+ML+ + EI + P Q+ +
Sbjct: 176 HIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQ-GFSDNFAEILKMVPGDIQIAL 234
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT +EI + K+F++D + + +L L G++Q Y+ +++ ++
Sbjct: 235 FSATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAIQQEDQ 282
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 134 bits (325), Expect = 3e-30
Identities = 76/230 (33%), Positives = 117/230 (50%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F F + +A+ D F PS +Q + IP + G D + A++G GKTA F L L
Sbjct: 6 SNFSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPIL 65
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
Q L P S L++ TRELA Q+++++E SKY V ++V GG + + L++
Sbjct: 66 QNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
+VVGTPGRIL FILDE D+ML + DV+ I P KQ+
Sbjct: 126 A-QVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLR-MGFIEDVETILEKLPEKKQM 183
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+FSAT+ IR + ++ DP + + E + ++Q ++ ++K
Sbjct: 184 ALFSATMPYRIRQIANTYLNDPASIEIRMET-ATVKSIEQRFLFASVHQK 232
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 134 bits (325), Expect = 3e-30
Identities = 68/221 (30%), Positives = 120/221 (54%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L P + R I G+ + +E+Q + IP A+ DI+ ++ +G GKT F++ LQ
Sbjct: 3 FNTLNLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQN 62
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L +++C T ELA QI ++ +F+ Y+ GV ++ GG IQ+ L+ +
Sbjct: 63 LNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS-- 120
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+I+VGTPGRI +LDE D+ML+ + + D+ ++F+N P+ Q ++
Sbjct: 121 NIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLK-MGFKTDLDKVFQNAPNKYQTLL 179
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
FSAT+ K++ + + +P+E+ V ++ + + QHYV
Sbjct: 180 FSATMPKQVLEIANNYQTNPVEIVVTKNV-IEQNNISQHYV 219
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 134 bits (324), Expect = 4e-30
Identities = 72/206 (34%), Positives = 111/206 (53%), Gaps = 1/206 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQ 431
F L +LRAI+D GFE+P+EVQ + IP + +D++ A++G GKTA F +Q
Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFPVIQ 63
Query: 432 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
+++ + + L++ TREL QI+ E + +SKY G+ V +GG I + +K
Sbjct: 64 KIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIKRGA 123
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
I+V TPGR+ ILDE D+ML ++ D+ I TP K
Sbjct: 124 -QIIVATPGRMQDMINRRLVDISQINYCILDEADEML-NMGFYEDIVNILSTTPDEKNTW 181
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYV 869
+FSAT+ E+ + K+FM DP+E+ V
Sbjct: 182 LFSATMPAEVARIGKQFMTDPIEITV 207
>UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=55; Lactobacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Enterococcus faecalis
(Streptococcus faecalis)
Length = 449
Score = 134 bits (323), Expect = 5e-30
Identities = 69/210 (32%), Positives = 121/210 (57%), Gaps = 1/210 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+ F +P I A+ + GFE P+EVQ + IP G ++ Q+++G GKT F+L + +
Sbjct: 4 FKQFQFQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMDK 63
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKY-MSGVRVSVFFGGMPIQKDEEVLKTAC 611
++P+ V +++ +RELA QI +E ++ +++ +RVS F GG Q+ LK
Sbjct: 64 VKPTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQ 123
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
PH+V+GTPGRIL F++DE D L+ + +V +I P Q++
Sbjct: 124 PHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLD-MGFLAEVDQIAGRLPEKLQML 182
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEA 881
+FSAT+ +++RP KK++++P+ ++ +A
Sbjct: 183 VFSATIPEKLRPFLKKYLENPVIEHIKPKA 212
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 134 bits (323), Expect = 5e-30
Identities = 71/226 (31%), Positives = 120/226 (53%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S F L ++++ + G+E +E+Q +P + G D++ QAK+G GKTA F L
Sbjct: 3 SKDFASLPLSEDLIKNVASLGYEEMTEIQELSLPAILDGKDLIAQAKTGTGKTAAFGLGV 62
Query: 426 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L +L + + VL++C TREL Q+SK ++ M +++ GGMP + + +
Sbjct: 63 LSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQMKSVAH 122
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
HIVVGTPGRIL +LDE D+ML+ + + ++ I T +Q
Sbjct: 123 GA-HIVVGTPGRILKHLNKSSLSLDHVRTLVLDEADRMLD-MGFQDEIDAIIDQTNKQRQ 180
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKL 923
++FSAT K+I + K+ M+DP+ + + D + ++QH+ K+
Sbjct: 181 TLLFSATYPKKIATIAKRVMKDPLRIEL-DSQVHEESTIEQHFYKV 225
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 134 bits (323), Expect = 5e-30
Identities = 71/228 (31%), Positives = 128/228 (56%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+DF L ++++AI GFE + +Q + IP + D++ QA++G GKTA F + +++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ P ++ +V+ TRELA Q+S+E + + +V +GG I + LK P
Sbjct: 65 INPESPNIQAIVIAPTRELAIQVSEELYKIGQ-DKRAKVLPIYGGQDIGRQIRALKKN-P 122
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+I+VGTPGR+L ++DE D+ML ++ D++ I N P Q ++
Sbjct: 123 NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEML-NMGFIDDIESILSNVPSEHQTLL 181
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+ I+ + ++FM +P V V + ++ + +QQ Y++++E +K
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAK-EMTVSNIQQFYLEVQERKK 228
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 134 bits (323), Expect = 5e-30
Identities = 76/222 (34%), Positives = 115/222 (51%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
L+ ++LR I GFE PS +Q I Q + G D++ Q++SG GKTA F ++ LQ L+
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 629
L++ TRELA QI K YM+ V+ GG + +D L H+V G
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYG-QHVVAG 162
Query: 630 TPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATL 809
TPGR+ +LDE D+ML + + +++R P QV++ SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATL 221
Query: 810 SKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENE 935
EI + KFM DP+ + V + +L L G++Q +V ++ E
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREE 262
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 134 bits (323), Expect = 5e-30
Identities = 79/230 (34%), Positives = 112/230 (48%)
Frame = +3
Query: 225 GSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 404
G + + F LL +L + GFE PS VQ + IP G+D++ QAKSG GKT
Sbjct: 54 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 113
Query: 405 AVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQK 584
VF L L +L++ TRE+A QI M G+ VF GG P+ +
Sbjct: 114 CVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 173
Query: 585 DEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFR 764
D+ LK HI VG+PGRI FILDE DK+LE + + I+
Sbjct: 174 DKTRLKKC--HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 231
Query: 765 NTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHY 914
+ P KQ++ SAT + + K+M+DP V + + + L GL+Q+Y
Sbjct: 232 SLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL-NSSDPSLIGLKQYY 280
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 133 bits (322), Expect = 7e-30
Identities = 79/230 (34%), Positives = 112/230 (48%)
Frame = +3
Query: 225 GSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKT 404
G V + F LL +L + GFE PS VQ + IP G+D++ QAKSG GKT
Sbjct: 55 GDVVLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 114
Query: 405 AVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQK 584
VF L L +L++ TRE+A QI M G+ VF GG P+ +
Sbjct: 115 CVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 174
Query: 585 DEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFR 764
D+ LK HI VG+PGRI FILDE DK+LE + + I+
Sbjct: 175 DKTRLKKC--HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 232
Query: 765 NTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHY 914
+ P KQ++ SAT + + ++M+DP V + + + L GL+Q+Y
Sbjct: 233 SLPASKQMLAVSATYPEVLANALTRYMRDPTFVRL-NPSDPSLIGLKQYY 281
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 133 bits (321), Expect = 9e-30
Identities = 70/207 (33%), Positives = 112/207 (54%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
SGF F +L+ + D G+ PS +Q P+ +LG D++ QA++G GKTA F L L
Sbjct: 71 SGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLL 130
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
++LE + VLV+ TRELA Q++ ++ ++ ++V +GG + L+
Sbjct: 131 ERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRG 190
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
+VVGTPGR++ +LDE D+ML + DV+ I P +QV
Sbjct: 191 V-DVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLR-MGFIDDVEWILEQLPKERQV 248
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYV 869
++FSAT+ EIR + K+++ DP EV +
Sbjct: 249 VLFSATMPPEIRRLSKRYLNDPAEVTI 275
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 133 bits (321), Expect = 9e-30
Identities = 75/223 (33%), Positives = 126/223 (56%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
LK ++L+ I + GFE P+ +Q + IP A+ G+D++ QA++G GKTA F + L ++ E
Sbjct: 11 LKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPILNRVIKGE 70
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 629
+ LV+C TRELA Q+++E S+ M ++V +GG I+ L+ P I+VG
Sbjct: 71 G-LQALVLCPTRELAVQVTEEISSLSRRMR-IQVLAIYGGQSIELQLRSLRRN-PEIIVG 127
Query: 630 TPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATL 809
TPGR++ +LDE D+ML+ + D+Q+I P +Q +FSATL
Sbjct: 128 TPGRLMDHMNRGTISLSPLKYVVLDEADEMLD-MGFLPDIQKILSQCPRERQTFLFSATL 186
Query: 810 SKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
E+R + KFM+ P E+ + + + + ++Q+Y ++ K
Sbjct: 187 PDEVRELGTKFMKQP-EIILIESPERTVPEIEQYYYQVNSRRK 228
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 133 bits (321), Expect = 9e-30
Identities = 73/223 (32%), Positives = 117/223 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D + P +LRAI D G+E P+ +Q IP + G D++ A++G GKTA F + L +
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ + LV+ TRELA Q+++ + R+ Y+S + V +GG L+
Sbjct: 75 IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA- 133
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+VVGTPGR++ +LDE D+ML ++ DV+ I TP KQV +
Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEML-TMGFADDVERILSETPEYKQVAL 192
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKL 923
FSAT+ IR + K++ DP EV + + + Q Y+++
Sbjct: 193 FSATMPPAIRKLSAKYLHDPFEVTCKAKTAV-AENISQSYIQV 234
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 132 bits (320), Expect = 1e-29
Identities = 73/224 (32%), Positives = 119/224 (53%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F LL +I + + GF+ PS +Q + IP G D++ ++KSG GKT VF L+
Sbjct: 26 FASLLLPDDIKQGLSVSGFKKPSPIQFKAIPLGRCGFDLIVKSKSGTGKTLVFSTIALET 85
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ ++ H+ VL++ TRE+A QI +++G+++ F GG P++ D + K++
Sbjct: 86 VNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVNGLKIESFIGGRPLEDD--LKKSSKC 143
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HI VG PGR+ F+LDE DK++E + D+ EI+ + P KQ+++
Sbjct: 144 HIAVGAPGRVKHLLKMGALTTNLVKLFVLDEADKLMEE-SFQSDINEIYNSLPPRKQMIV 202
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
SAT +E+ +MQ P V +E L L GL+Q L+
Sbjct: 203 SSATYPQELDTFLANYMQSPTHVTSENETPLLL-GLKQFAAMLR 245
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 132 bits (320), Expect = 1e-29
Identities = 70/205 (34%), Positives = 115/205 (56%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L+ +L A+ + G+E PS +Q CIP + G D+L +A++G GKTA F L L +
Sbjct: 46 FAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDR 105
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L+ + + VLV+ TRELA Q+++ ++R++K + G V +GG + L
Sbjct: 106 LDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLARGA- 164
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
H++VGTPGR++ +LDE D+ML + DV+ I ++TP +Q +
Sbjct: 165 HVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLR-MGFIDDVEWILQHTPAERQTAL 223
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYV 869
FSAT+ IR V +++++P EV +
Sbjct: 224 FSATMPDAIRRVAHRYLREPREVKI 248
>UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3;
Thermoplasma|Rep: ATP-dependent RNA helicase -
Thermoplasma volcanium
Length = 373
Score = 132 bits (320), Expect = 1e-29
Identities = 76/236 (32%), Positives = 127/236 (53%)
Frame = +3
Query: 252 GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ 431
GF +F L+ E++ +I G+ P+EVQ IP A+ G D++ ++K+G GKTA +++ +
Sbjct: 3 GFEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPIIN 62
Query: 432 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
E + L++ TRELA Q++K E K SG+R V +GG+ I K E++
Sbjct: 63 N-TAKEKGIRALILLPTRELAVQVAKVSEALGK-RSGIRTVVVYGGVSINKQIELILRGA 120
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
+I+VGTPGR L F+LDE D+ML+ + D+++I P +Q
Sbjct: 121 -NIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLD-MGFIEDIKKIINVLPVERQSF 178
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNRNSSNY 959
+FSAT+ EI + K FM + E+ + ++ ++G+ +Y + K R +Y
Sbjct: 179 LFSATIPSEIIELAKGFMHNE-EILFLSKDEVTVNGIDHNYAVSRRERKLRTLFSY 233
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 130 bits (314), Expect = 7e-29
Identities = 70/211 (33%), Positives = 112/211 (53%)
Frame = +3
Query: 306 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTR 485
G + +Q + IP + G DI+ QAK+G GKT FVL L++++P S V L++ TR
Sbjct: 24 GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTR 83
Query: 486 ELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXX 665
ELA QI+ E ++ + V +GG + + LK HIVV TPGR+L
Sbjct: 84 ELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLK-GNTHIVVATPGRLLDHIRRE 142
Query: 666 XXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFM 845
+LDE D+ML D+++I TP KQ M+FSAT+ K+I+ + K++M
Sbjct: 143 TIDLSNLSTIVLDEADQML-YFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRYM 201
Query: 846 QDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+P + V E ++ + ++Q ++ + K
Sbjct: 202 DEPQMIQVQSE-EVTVDTIEQRVIETTDRAK 231
>UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1;
Clostridium cellulolyticum H10|Rep: DEAD/DEAH box
helicase-like - Clostridium cellulolyticum H10
Length = 542
Score = 130 bits (313), Expect = 9e-29
Identities = 71/229 (31%), Positives = 120/229 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + + IL+AI D GF+ P+EVQ + IP + D++ +K+G GKTAVF ++ LQ
Sbjct: 5 FNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQL 64
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
P E+ L++ RELA Q+ + + +KY+ + + +G I + ++L
Sbjct: 65 TNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKH-KTTAIYGQHNINLETQILNKGV- 122
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
IV GTPGR+ +LDE D+ML+ + V I + P + ++
Sbjct: 123 SIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLD-MGFLDQVVRIVKTLPKERITLL 181
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
FSAT+ EI +CK++M +P+ + + + K + + Q Y ++ NEKN
Sbjct: 182 FSATMPPEIHNICKRYMNNPVTIEIESQTK-TVDTIHQVYYRVNYNEKN 229
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 129 bits (312), Expect = 1e-28
Identities = 69/218 (31%), Positives = 114/218 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L ++L +++CGF PS +QH+ IP G D++ +AKSG GKTAVF + L+
Sbjct: 26 FSQMGLSQQVLNGLLNCGFHKPSPIQHKSIPLGRCGFDLIVRAKSGTGKTAVFGIIALEM 85
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ S V V+++ TRE+A QI + + G++V F GG+ + D + L
Sbjct: 86 IDIKISSVQVIILAPTREIAIQIKEVIASLGCEIKGLKVESFIGGVAMDIDRKKLSNC-- 143
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HI +G PGR+ F+LDE DK++E ++D+ I+ P +QV+
Sbjct: 144 HIAIGAPGRVKHLIDKGYLKMDHVRLFVLDEADKLMEE-SFQKDINYIYAKLPPNRQVIS 202
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQ 908
SAT ++ + +MQ P+ ++ + L GL+Q
Sbjct: 203 SSATYPGDLEIFLESYMQSPILSSADNDGPI-LVGLRQ 239
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 129 bits (312), Expect = 1e-28
Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 2/227 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
+ D+ LK ++L+ I GFE PS +Q I + G DI QA+SG GKT F +A LQ
Sbjct: 40 WEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQI 99
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ S+ +LV+ TRE+A Q + +E +M G RV++ GG PI D+ L+ P
Sbjct: 100 CDMSQDVTQILVLASTREIAAQNAARFEDLGCFM-GARVALLSGGSPIAADKVALEKK-P 157
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK--QV 788
HIVVGTPGR+ F++DE D+ML++ + V+ IFR + Q+
Sbjct: 158 HIVVGTPGRVEHMININELSMDNIKLFVIDEADEMLKA-GFQEQVKSIFRRITNKDEVQI 216
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKE 929
MFSAT +E V ++ + +P+ + + + L G++Q+++ L++
Sbjct: 217 AMFSATYDEEELRVSEEILINPVIIDLRYNDQ-TLKGIRQYFIDLRK 262
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 129 bits (311), Expect = 2e-28
Identities = 71/218 (32%), Positives = 119/218 (54%)
Frame = +3
Query: 237 SIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFV 416
S + F D+ LK E+L I + G+E PS +Q E IP A+ G DIL +AK+G GK+ ++
Sbjct: 78 STKGNEFEDYCLKRELLIGIFEMGWE-PSSIQEESIPIALSGRDILARAKNGTGKSGAYL 136
Query: 417 LATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
+ L++L+ + ++ +V+ TRELA Q+S+ + SK+M G +V GG + +D+ +
Sbjct: 137 IPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL-RDDVM 195
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
H+V+ TPGRIL +LDE DK+L S D + ++ P
Sbjct: 196 RLDDTGHVVIATPGRILDLIKKCLEKVDHVQMVVLDEADKLL-SQDFVQIMEAFILTLPK 254
Query: 777 GKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLK 890
+Q++++SAT ++ +Q P E+ + +E LK
Sbjct: 255 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK 292
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 129 bits (311), Expect = 2e-28
Identities = 68/215 (31%), Positives = 113/215 (52%)
Frame = +3
Query: 234 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 413
V + + F L PE+L + + GFE + +Q E IP + G DI+ QAK+G GKTA F
Sbjct: 42 VPVSQNEFSTLPLSPELLTVVQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAAF 101
Query: 414 VLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
L L ++ + + L++C TRELA Q+ E + + + G++V GG ++ +
Sbjct: 102 SLPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQAD 161
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
L+ IVVGTPGR+ +LDE DKML+ + +++ + R+ P
Sbjct: 162 ALENGV-QIVVGTPGRLADFVGRNRIDLSAVKTVVLDEADKMLD-MGFADEIKTVMRDLP 219
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDE 878
+Q ++FSAT + I + +K+ + +V + DE
Sbjct: 220 GSRQTVLFSATFPESIEHLSRKYQRHAQQVIIEDE 254
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 129 bits (311), Expect = 2e-28
Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 1/232 (0%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
+GF F L P ++ A+ D + P+++Q IP A+ G DI+ Q+++G GKT F+L +
Sbjct: 2 NGFSHFDLHPFVVEALEDARIKKPTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLPIV 61
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYER-FSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
Q + P + +++ TRELA+QI +E + K ++ S+ GGM ++ +K
Sbjct: 62 QNVNPELQEMQAIIVAPTRELAWQIHEELKSILVKQPDYIKTSLITGGMDRERQIGRVKV 121
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
+ P IV+GTPGRIL +I+DE D+ML+ + +V I + P Q
Sbjct: 122 S-PQIVIGTPGRILDLFKEQALKPHFVKHYIIDEADQMLD-MGFLPEVDRIAQALPEKLQ 179
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
+M+FSAT+ ++++P KK+M +P +V D + + H V +K +++
Sbjct: 180 MMVFSATIPEKLQPFLKKYMNNPRYAHV-DPKQQTAKKIVHHTVPVKHRDRS 230
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 129 bits (311), Expect = 2e-28
Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 3/210 (1%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
+GF + L+PE+LR++ G+E P+ +Q E +P V G D+L QA +G GKTA F L L
Sbjct: 57 AGFAELALRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLL 116
Query: 429 QQLEPSESHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
+L + + LV+ TRELA Q+S+ R+ + + G RV +GG PI + L
Sbjct: 117 HRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHRYGRDL-GARVLPVYGGAPIGRQVRAL 175
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+VV TPGR L +LDE D+ML+ + D+ I P
Sbjct: 176 VQGV-DVVVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLD-MGFAEDIDAILEQAPQK 233
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
+Q ++FSATL + + ++ ++DP+ + +
Sbjct: 234 RQTVLFSATLPPRMDQIARRHLRDPVRIQI 263
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 128 bits (310), Expect = 2e-28
Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF L I+R+I D GF + S +Q E +P + G DI+ +A++G GKTA F++ LQ+
Sbjct: 100 FHDFNLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQK 159
Query: 435 L---EPSE---SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
L +P E S L++ TRELA QI+K+ + SKY + + + GG+ K +E
Sbjct: 160 LLTVKPEERFASEPRALILAPTRELAMQIAKDADGLSKY-ADLNIVTVLGGVDYDKQKEQ 218
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
L+ +VV TPGR+L ++DE D+ML+ + D++ I R TP
Sbjct: 219 LENEVVDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLD-MGFIPDLKRIIRGTPE 277
Query: 777 G--KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNRNS 950
+Q +FSAT ++ + + + P +V + E+ + ++Q ++ L+E +K+
Sbjct: 278 KSIRQTQLFSATYPYDVVALSESWTYKPEQVEIEPES-VATETVKQQFISLQETQKDNAL 336
Query: 951 SNY 959
Y
Sbjct: 337 IEY 339
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 128 bits (310), Expect = 2e-28
Identities = 66/200 (33%), Positives = 107/200 (53%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L +LR + + G+E PS +Q IP + D+L QA++G GKTA F L L +
Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ ++ LV+ TRELA Q+++ ++R++ Y+ G V +GG L+
Sbjct: 69 IDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGV- 127
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
H+VVGTPGR++ +LDE D+ML + DV+ I + TP +Q +
Sbjct: 128 HVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLR-MGFIDDVETILQKTPESRQTAL 186
Query: 795 FSATLSKEIRPVCKKFMQDP 854
FSAT+ I+ + +++DP
Sbjct: 187 FSATMPSAIKRIATTYLRDP 206
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 128 bits (310), Expect = 2e-28
Identities = 64/203 (31%), Positives = 116/203 (57%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
+ P I +A+ G S +Q + +P A+ G D++ QA++G GKT FV+ L+++E ++
Sbjct: 11 INPAITKALDSQGIHQLSPIQAQSLPDALQGKDVIGQAQTGSGKTLCFVIPALEKIEVND 70
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 629
+++C TRELA Q++++ +K + ++V+ GG P+ + LK + PHI+VG
Sbjct: 71 FSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLKHS-PHIIVG 129
Query: 630 TPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATL 809
TPGR++ +LDE D+ML+ + D++ IF TP Q ++FSAT
Sbjct: 130 TPGRVMDHVEKRRIDLRNVKLRVLDEADRMLD-MGFEDDLRIIFGQTPKQVQTLLFSATF 188
Query: 810 SKEIRPVCKKFMQDPMEVYVXDE 878
+++I V K+++ +P+ V +
Sbjct: 189 TEQIERVAKQYLHNPVTCKVESQ 211
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 128 bits (310), Expect = 2e-28
Identities = 76/223 (34%), Positives = 111/223 (49%), Gaps = 3/223 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F LL +L + GF+ PS +Q + IP G+D++ QAKSG GKT VF L
Sbjct: 28 FSSLLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDLIVQAKSGTGKTCVFTTIALDS 87
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L + VLV+ TRE+A QI M G+ VF GG PI +D++ LK
Sbjct: 88 LILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGRPISQDKQHLKKC-- 145
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE---SLDMRRDVQEIFRNTPHGKQ 785
HI +G+PGRI F+LDE DK+LE S + + I+ + P KQ
Sbjct: 146 HIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLLEDDSSSSFQEQINWIYSSLPANKQ 205
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHY 914
++ SAT + + ++M++P V + + L GL+Q+Y
Sbjct: 206 MLALSATYPESLAQQLSRYMREPTFVRL-NPTDPGLLGLKQYY 247
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 128 bits (309), Expect = 3e-28
Identities = 72/205 (35%), Positives = 110/205 (53%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + + E + + GF P+ +Q + IPQ + G D++ Q+++G GKTA F L L++
Sbjct: 5 FPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILER 64
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L+P + V +V+ TRELA Q+ +F SG+R +GG I + LK
Sbjct: 65 LDPQQKAVQAIVLTPTRELAIQVHDAMAQFVG-NSGLRTLAIYGGQSIDRQMLQLKRGV- 122
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVVGTPGR++ F+LDE D+ML S+ DV++I P +Q +
Sbjct: 123 HIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEML-SMGFIDDVEKILSQAPQDRQTAL 181
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYV 869
FSAT+ IR + KF++ P+ V V
Sbjct: 182 FSATMPPSIRMLVNKFLRSPVTVTV 206
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 128 bits (309), Expect = 3e-28
Identities = 67/200 (33%), Positives = 109/200 (54%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
L P + I G+ + VQ + +P + G+D++ QA +G GKTA F L LQ+L+P+
Sbjct: 33 LSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGLLQKLDPAL 92
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 629
+ LV+C TRELA Q+ K+ + + + +++ V GGMP+ L+ PH+VVG
Sbjct: 93 TRAQALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPHVVVG 152
Query: 630 TPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATL 809
TPGRI +LDE D+ML+ + ++EI +Q ++FSAT
Sbjct: 153 TPGRIQELARKRALHLGGVRTLVLDEADRMLD-MGFEEPIREIASRCDKHRQSLLFSATF 211
Query: 810 SKEIRPVCKKFMQDPMEVYV 869
IR + ++ ++DP+E+ V
Sbjct: 212 PDIIRTLAREILKDPIEITV 231
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 128 bits (309), Expect = 3e-28
Identities = 63/205 (30%), Positives = 114/205 (55%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L P +L+ + G+E P+ +Q + I Q + G D+L A++G GKTA F L L +
Sbjct: 7 FADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLSR 66
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ +++ LV+C TRELA Q+++ ++ +++ + V +GG ++ LK P
Sbjct: 67 IDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQN-P 125
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
++VGTPGR++ +LDE D+ML + D+ I +TP KQ +
Sbjct: 126 QVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLR-MGFIEDIDWILEHTPKDKQTAL 184
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYV 869
FSAT+ +I+ + ++ +DP+++ +
Sbjct: 185 FSATMPHQIKRITDQYQKDPVKIEI 209
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 128 bits (308), Expect = 4e-28
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 2/207 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM--DILCQAKSGMGKTAVFVLATL 428
F + + PEI +AI + G+E+P VQ E IP +LG D++ A++G GKTA F L L
Sbjct: 4 FEELGVSPEIRKAIEEMGYENPMPVQEEVIPY-LLGENNDVVALAQTGTGKTAAFGLPLL 62
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
QQ++ L++C TREL QI+ + +SKY+ G++V +GG I LK
Sbjct: 63 QQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLKRG 122
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
HI+V TPGR+L ++DE D+ML ++ + I + P +
Sbjct: 123 V-HIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEML-NMGFTDSINAILADVPKERNT 180
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYV 869
++FSAT+S EI + K ++Q+ E+ +
Sbjct: 181 LLFSATMSPEIARISKNYLQNAKEITI 207
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 128 bits (308), Expect = 4e-28
Identities = 75/236 (31%), Positives = 133/236 (56%), Gaps = 1/236 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F++ + ++++ GF+ P+ +Q + IP A+ G+DIL QA++G GKT F + +++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEK 63
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ + V L++ TRELA Q++++ FS+ GV+V FGGMPI++ + LK P
Sbjct: 64 VVGKQG-VQSLILAPTRELAMQVAEQLREFSR-GQGVQVVTVFGGMPIERQIKALKKG-P 120
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH-GKQVM 791
IVVGTPGR++ ILDE D+M+ ++ D++ I P +Q M
Sbjct: 121 QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMM-NMGFIDDMRFIMDKIPAVQRQTM 179
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNRNSSNY 959
+FSAT+ K I+ + ++FM+ P + + ++ +++ Y +KE EK +N+
Sbjct: 180 LFSATMPKAIQALVQQFMKSPKIIKTMNN-EMSDPQIEEFYTIVKELEKFDTFTNF 234
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 127 bits (307), Expect = 5e-28
Identities = 76/252 (30%), Positives = 134/252 (53%), Gaps = 3/252 (1%)
Frame = +3
Query: 195 TEVAPKKEVKGSYVSIH---SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM 365
+E +P +K S H + GF F LK +L+ I + GF PS VQ + IP + G
Sbjct: 24 SEESPSVTIKQGLKSKHKQDTQGFDVFGLKDFVLKGIREAGFSTPSPVQSQSIPIILQGK 83
Query: 366 DILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGV 545
D++ QA++G GKTA F + L L ++ + L++ TRELA QIS+E + ++ +
Sbjct: 84 DLIAQAQTGTGKTAAFAIPILNTLNRNKD-IEALIITPTRELAMQISEEILKLGRF-GRI 141
Query: 546 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 725
+ +GG I++ ++L+ P ++ TPGR+L +LDE D+ML+
Sbjct: 142 KTICMYGGQSIKRQCDLLEKK-PKAMIATPGRLLDHLQNGRIAHFSPQIVVLDESDEMLD 200
Query: 726 SLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQ 905
+ D++EIF+ P+ +Q ++FSAT+ + I+ + K + +P V + + ++
Sbjct: 201 -MGFLDDIEEIFKFLPNTRQTLLFSATMPEPIKALAMKILNEPAFVKI-TPTDVTNQDIE 258
Query: 906 QHYVKLKENEKN 941
Q Y + E E++
Sbjct: 259 QQYYIINEGERD 270
>UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Cystobacterineae|Rep: DEAD/DEAH box helicase domain
protein - Anaeromyxobacter sp. Fw109-5
Length = 455
Score = 127 bits (307), Expect = 5e-28
Identities = 73/224 (32%), Positives = 117/224 (52%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
++ F + L PE L A+ GFEHP+ +Q + IP A+ G D++ A +G GKTA F+L
Sbjct: 3 TTSFAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPL 62
Query: 426 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
+ +L + LV+ TRELA QI +E ERF + VR +V GG+ + + E L+
Sbjct: 63 IDRL-AGKPGTRALVLAPTRELALQIGEELERFG-HARRVRGAVIIGGVGMAQQAEALRQ 120
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
IV+ TPGR++ +LDE D+ML+ + + + I R P +Q
Sbjct: 121 K-REIVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLD-MGFKPQLDRILRRLPKQRQ 178
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
++FSAT++ E+ + ++DP+ V V QQ ++
Sbjct: 179 TLLFSATMAGEVADFARAHLRDPVRVEVARSGTTAARAEQQVFL 222
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 127 bits (306), Expect = 6e-28
Identities = 72/212 (33%), Positives = 112/212 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L +L + F P+ +Q + IP + G D+L +A++G GKTA F L L +
Sbjct: 10 FNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPALAK 69
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ S VLV+ TRELA Q+++ E F+ M GV V+ +GG P + LK
Sbjct: 70 IDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKALKQGTA 129
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
IVVGTPGR++ +LDE D+ML ++ D++ I + P+ Q +
Sbjct: 130 -IVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEML-NMGFIEDIETILKAVPNTAQRAL 187
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLK 890
FSAT+ IR + K F++DP+ + + A+ K
Sbjct: 188 FSATMPNAIRKLAKTFLKDPLNIQIEAIAREK 219
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 127 bits (306), Expect = 6e-28
Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 2/230 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
+ D L E+ A+ + PS +Q IP A+ G D+L QA++G GKTA F + +++
Sbjct: 6 YADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPIIER 65
Query: 435 LE--PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
LE P+ + L++ TRELA Q+ E + + + + V +GG P++ E LK A
Sbjct: 66 LEHGPNSRNPQALILTPTRELAVQVRDEIAKLT-HGQRINVVAVYGGKPLRSQMEKLKRA 124
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
PHIVVGTPGR++ +LDE D+ML+ + R D+++I R P +Q
Sbjct: 125 -PHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLD-IGFRPDIEKILRRCPEERQT 182
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
++ SAT+ I + +++M++P +V + ++Q Y + ++K
Sbjct: 183 LLLSATVPPTIEKLAQRYMRNPEKV-DFSPTNISAETIEQRYFTVDHSKK 231
>UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46;
n=2; Caenorhabditis elegans|Rep: Putative
uncharacterized protein mel-46 - Caenorhabditis elegans
Length = 973
Score = 127 bits (306), Expect = 6e-28
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 1/233 (0%)
Frame = +3
Query: 222 KGSYVSIHSS-GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 398
+GS + + S+ F ++ + L + + F+ PS VQ IP +LG D+L QAKSG G
Sbjct: 12 RGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTG 71
Query: 399 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 578
KT VF + ++ L+ SH+ +++ TRE++ QI + + + +G R SV+ GG
Sbjct: 72 KTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP--TGARTSVYVGGSAH 129
Query: 579 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEI 758
+ + LK P IV+GTPGRI F+LDE DK+++ + R D+ I
Sbjct: 130 KLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEV-FRDDINII 188
Query: 759 FRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
+ P +QV +FSAT + + + F++D V + ++L G++Q+ V
Sbjct: 189 INSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNAD-DVQLFGIKQYVV 240
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 126 bits (305), Expect = 8e-28
Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 2/230 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAV-LGMDILCQAKSGMGKTAVFVLATLQ 431
F DF L EIL AI G+E P+E+Q +P A+ D++ QA++G GKTA F + L+
Sbjct: 20 FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79
Query: 432 QLE-PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
+++ + V +++ TRELA QI +E + K V+++ +GG ++K + L+
Sbjct: 80 RIDFKANKFVKAIIVTPTRELALQIFEELKSL-KGTKRVKITTLYGGQSLEKQFKDLEKG 138
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
IVVGTPGRI+ +LDE D+ML+ + DV EI + T K+
Sbjct: 139 VD-IVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLD-MGFLDDVLEIIKRTGENKRT 196
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+FSAT+ KEI + +KFM++ + V + +L +Q Y ++ E +K
Sbjct: 197 FLFSATMPKEIVDIARKFMKEYIHVSTVKD-ELTTENAEQLYFEVDEKDK 245
>UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box
family; n=6; Bacteria|Rep: ATP-dependent RNA helicase,
DEAD-box family - Sulfurovum sp. (strain NBC37-1)
Length = 492
Score = 126 bits (305), Expect = 8e-28
Identities = 79/229 (34%), Positives = 126/229 (55%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF LK I A+ + GF+ PS VQ + IP + G D++ QA++G GKTA F L +
Sbjct: 3 FTDFNLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEGHDMIAQAQTGTGKTAAFGLPIMSM 62
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ ++ V LV+ TRELA Q+S E RF K +SG++ + +GG K E +K A
Sbjct: 63 MK-ADGSVEGLVIVPTRELAMQVSDELFRFGK-LSGLKTATVYGGTAYGKQIERIKQA-- 118
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
IVV TPGR L +LDE D+ML+ + +++ IF P +Q +M
Sbjct: 119 SIVVATPGR-LQDLLMSGKIKLNPHFVVLDEADEMLD-MGFLDEIKNIFTFLPKERQTLM 176
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
FSAT+ IR + ++ + +P V + +++ + Q+Y ++E E++
Sbjct: 177 FSATMPNGIRKLAEQILNNPKTVSI-TKSESTNSKITQYYYVVQERERD 224
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 126 bits (304), Expect = 1e-27
Identities = 73/228 (32%), Positives = 116/228 (50%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF LK +++ +V GF P+ +Q + IP + G D++ QA++G GKTA F L L
Sbjct: 57 FTDFNLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNN 116
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ S+ V LV+ TRELA Q+ +S G V V +GG Q L+
Sbjct: 117 IDFSKKCVQALVLAPTRELAQQVGDALATYSG-DDGRNVLVVYGGSSYQAQVGGLRRGA- 174
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+VVGTPGR+L +LDE D+ML S+ D++ I TP +Q M+
Sbjct: 175 RVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEML-SMGFIDDIETILSQTPKDRQTML 233
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSATLS + + +++ P + + + + ++Q Y + ++K
Sbjct: 234 FSATLSSRVMSIANRYLHSPESISISPKQMIG-SSIEQRYYLINNSDK 280
>UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellular
organisms|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 793
Score = 126 bits (304), Expect = 1e-27
Identities = 72/233 (30%), Positives = 130/233 (55%), Gaps = 3/233 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L I+RAI + G+EHP+ +Q + IP+ + G D+L A++G GKTA F L LQ+
Sbjct: 293 FADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQK 352
Query: 435 LEPSESHVYV---LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L S + + L++ TRELA Q+++ ++ + KY+ + ++ GG + + +VL
Sbjct: 353 LAGSRARARMPRSLILEPTRELALQVAENFKLYGKYLR-LTHALLIGGESMAEQRDVLNR 411
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
+++ TPGR+L ++DE D+ML+ + D+++I P +Q
Sbjct: 412 GV-DVLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLD-MGFIPDIEKIVALLPAHRQ 469
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNR 944
+ FSAT++ EIR + F++ P+E+ V ++ + +++ V + E+EK R
Sbjct: 470 TLFFSATMAPEIRRLADAFLRHPVEITVSRQSSVAT-TIEEALVIVPEDEKRR 521
>UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila
pseudoobscura|Rep: GA19670-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1007
Score = 126 bits (303), Expect = 1e-27
Identities = 69/224 (30%), Positives = 115/224 (51%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
L+ +++R + F P+++Q IP A+ GMD+L Q+KSG GKT ++V+ LQ S
Sbjct: 32 LRRQVMRGLAAENFRTPTKIQAAAIPIALTGMDLLVQSKSGTGKTLIYVVTALQMCSLST 91
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 629
H VLV+ TRELA Q+ + + + +VS F GG + +D E L+ H+ +G
Sbjct: 92 QHPEVLVILPTRELALQVHDIFRFLGEKLRSFKVSSFMGGTDVTRDREKLRNC--HVAIG 149
Query: 630 TPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATL 809
TPGR+L +LDE D++ + +++ V + P +QV+ SAT
Sbjct: 150 TPGRLLQLHEKGVLNMSMVKLLVLDEADQLYVTASLQKTVNALIAVLPLQRQVIACSATF 209
Query: 810 SKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
+ + K M+ P+ + + A + L G++Q +L E N
Sbjct: 210 DQNLDEKIAKMMEKPVLISNSERATVLL-GIRQFVYELPEQVNN 252
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 125 bits (302), Expect = 2e-27
Identities = 78/229 (34%), Positives = 118/229 (51%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L IL A+ + GF P+ +Q IP + G D L +A++G GKTA F L L +
Sbjct: 28 FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L S+ +VM TRELA Q++ E + + + G++V +GG I LK+
Sbjct: 88 LNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA- 146
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVVGTPGR+ FILDE D+ML+ + DV I P Q ++
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLK-MGFVDDVTWIMEQAPESAQRVL 205
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
FSAT+ ++ + ++F+++P V V + QQ++V +K EK+
Sbjct: 206 FSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWV-VKGVEKD 253
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 125 bits (302), Expect = 2e-27
Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 3/208 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
FR+ L IL+A+ + G+E PS +Q + IP A+ G D+L A++G GKT F LQ+
Sbjct: 3 FRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPILQR 62
Query: 435 LE---PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L P+ + L++ TRELA QI + +E + K++ +R +V FGG+ Q + LK
Sbjct: 63 LGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLP-LRSAVIFGGVGQQPQVDKLKK 121
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
I+V TPGR+L F+LDE D+ML+ + DV+ + + P KQ
Sbjct: 122 GV-DILVATPGRLLDLQGQGFVDLSRLEIFVLDEADRMLD-MGFLHDVRRVLKLLPAVKQ 179
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYV 869
+ FSAT+ E+ + +++P++V V
Sbjct: 180 TLFFSATMPPEVMDLVNGLLKNPVKVAV 207
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 125 bits (302), Expect = 2e-27
Identities = 78/228 (34%), Positives = 123/228 (53%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+ ++ ILR+I D FE P+E+Q IP + G DI+ A +G GKT F +Q+
Sbjct: 4 FKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGIIQK 63
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+E + LV+ TRELA Q+ + FS++ +RV+ +GG+ I L+ A
Sbjct: 64 IEKGNG-IRALVLTPTRELAEQVQNSLKEFSRHKQ-LRVAPIYGGVAINPQIRQLERA-- 119
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+VV TPGR+L +LDE D+ML+ + DV+EI P +Q MM
Sbjct: 120 DVVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLD-MGFIDDVEEIIDECPSDRQTMM 178
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+SK+I+ + K+M +P +V+ +A + L+Q Y+ + + K
Sbjct: 179 FSATVSKDIQYLSSKYMNNPSKVFA--KAYVDSDKLKQVYIDVPKKMK 224
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 125 bits (301), Expect = 2e-27
Identities = 76/228 (33%), Positives = 122/228 (53%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+ L +L+A+ D GFE P+ +Q E IP + G +++ QA +G GKTA ++L LQ+
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ + VL++ TRELA Q++ E + KY+ VR +GG I++ L+
Sbjct: 64 IQRGKK-AQVLIVTPTRELALQVADEVAKLGKYLK-VRALAVYGGQAIERQIRGLRQGV- 120
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
++VGTPGRIL ILDE D+ML+ + D++ I + +Q ++
Sbjct: 121 EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLD-MGFIDDIEAILNTLTNRQQTLL 179
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSATL I+ + KKF+ V + K + ++Q Y +L E EK
Sbjct: 180 FSATLPAPIKTIIKKFLGGYKTVKLVGREK-TVPAIRQVYYELPETEK 226
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 124 bits (300), Expect = 3e-27
Identities = 66/213 (30%), Positives = 109/213 (51%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
++ F L E L + + G+ + VQ +P + G D+ +AK+G GKTA F +
Sbjct: 3 TTSFSSLALPAEQLSNLNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGL 62
Query: 426 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L ++ S+ LV+C TRELA Q+SKE R +++ +++ GG P+ + + L
Sbjct: 63 LDRIVVSDFTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVH 122
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
A PHIVVGTPGRI +LDE D+ML+ + + ++ TP +Q
Sbjct: 123 A-PHIVVGTPGRIQDHLRKQSLALDSLKVLVLDEADRMLD-MGFTDAIDDVISYTPSDRQ 180
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAK 884
++FSAT +EI + + + P + D+ +
Sbjct: 181 TLLFSATYPQEIEQISARVQRQPQRFEIADDVE 213
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 124 bits (299), Expect = 4e-27
Identities = 69/212 (32%), Positives = 111/212 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L +L A++ GF +++Q IP + G D+L +A++G GKTA F L L +
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ S ++V+ TRELA Q+++ E F K M G+RV+ +GG + L+
Sbjct: 77 IDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA- 135
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+VVGTPGR++ +LDE D+ML ++ D+Q I + P Q+ +
Sbjct: 136 QVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEML-NMGFLEDIQWILDHIPKTAQMCL 194
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLK 890
FSAT+ IR + +F++DP + V K K
Sbjct: 195 FSATMPPAIRKIANRFLKDPEHIKVAAVKKAK 226
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 124 bits (299), Expect = 4e-27
Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 4/209 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L I +A+ + G++ PS +Q + IP + G D++ A++G GKTA F L L+
Sbjct: 3 FSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 435 LEPSES----HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L + LV+ TRELA Q+S+ E + KY+ +R +V FGG+PI + L+
Sbjct: 63 LSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQKLR 121
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
++V TPGR+L +LDE D+ML+ + RD+++I P +
Sbjct: 122 HGVD-VLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLD-MGFIRDIKKILAMLPAKR 179
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
Q +MFSAT S EIR + K + P+E+ V
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNQPVEISV 208
>UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_383_7421_6129 - Giardia lamblia ATCC
50803
Length = 430
Score = 124 bits (299), Expect = 4e-27
Identities = 79/241 (32%), Positives = 121/241 (50%), Gaps = 2/241 (0%)
Frame = +3
Query: 216 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 395
+VKGS V S G LK E+L + GF+ + VQ IP + D++ +AK+G
Sbjct: 15 DVKGSGVLFSSLG-----LKQELLMGLTQEGFQQLTPVQELAIPHILARRDVVARAKNGT 69
Query: 396 GKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGV--RVSVFFGG 569
GKT F++ LQ + P++ H+ LV+ HTRELA Q +K + SK M V R+ GG
Sbjct: 70 GKTGSFLIPILQMVNPAKDHIQALVLLHTRELAMQTAKVAKTLSKNMPDVTGRIMCAIGG 129
Query: 570 MPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDV 749
+ I +D E + P +V+ TPGR+ +LDE D +L +R
Sbjct: 130 VSIAEDRERAREK-PLVVLATPGRLQQLIDEEILNFRDCSIVVLDEADMLLSQNFIRSIE 188
Query: 750 QEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKE 929
+ + +Q + FSAT S ++ C K ++DP V ++ L L G+ Q+ LKE
Sbjct: 189 NCLAACSNKRRQTLFFSATFSNSLKEFCDKHLRDPEYVNAMQDS-LLLRGVTQYVCMLKE 247
Query: 930 N 932
+
Sbjct: 248 D 248
>UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 407
Score = 124 bits (298), Expect = 6e-27
Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 8/238 (3%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S+ F D L + RA+ GF+ PS VQ C+P G D++ QAKSG GKT FV+
Sbjct: 36 SASFGDLQLDERLTRALRAAGFDAPSPVQLACVPLGRFGCDVIAQAKSGTGKTMTFVVIA 95
Query: 426 LQQLEPSESHVYVLVMCHTRELAFQISKEY-ERFSKY-------MSGVRVSVFFGGMPIQ 581
L++++ L + TRE A Q + + E K+ G+ + GG+P++
Sbjct: 96 LERVDAGRRRTQALALAPTRECAVQTHECFVEMIEKFKDMDGDARGGIETCLLVGGLPVK 155
Query: 582 KDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIF 761
+D L + PH+VVGTPGR ILDE D +L S RDV +
Sbjct: 156 EDRARLASQ-PHVVVGTPGRTRQMLEEGSMACDGARLLILDEADALL-SGTFERDVLFAY 213
Query: 762 RNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENE 935
P KQV FSAT SK + ++ M+ P +V + E+ L G++Q Y +++ +
Sbjct: 214 SMLPERKQVCAFSATYSKTLLGDLERLMRAPQKVMLC-ESTTALQGVRQFYSLIEKED 270
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 124 bits (298), Expect = 6e-27
Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 6/206 (2%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
L P+ILRA+ + G+ P+ +Q + IP + G D++ A++G GKTA F L LQ L +
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67
Query: 450 SH------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
H V L++ TRELA QI + +SKY++ +R V FGG+ I L+
Sbjct: 68 PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGV 126
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
++V TPGR+L +LDE D+ML+ + D++ + P +Q +
Sbjct: 127 -DVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLD-MGFIHDIRRVLTKLPAKRQNL 184
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYV 869
+FSAT S +I+ + +K + +P+E+ V
Sbjct: 185 LFSATFSDDIKALAEKLLHNPLEIEV 210
>UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;
n=5; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 789
Score = 124 bits (298), Expect = 6e-27
Identities = 73/239 (30%), Positives = 129/239 (53%), Gaps = 4/239 (1%)
Frame = +3
Query: 234 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 413
VS H+ F + L +LRA G++ P+ +Q CIP A+ G D+ A +G GKTA F
Sbjct: 162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAF 221
Query: 414 VLATLQQLEPSESHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQK 584
L TL++L V+ VL++ TRELA QI + +++ + ++ + GG+ +++
Sbjct: 222 ALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQF-TDIKCGLIVGGLSVRE 280
Query: 585 DEEVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIF 761
E VL+ + P IVV TPGR++ ILDE D++L++ ++ E+
Sbjct: 281 QEVVLR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQT-GFATEITELV 338
Query: 762 RNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
R P +Q M+FSAT+++E++ + K + P+ + A+ + GL + V+++ +
Sbjct: 339 RLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSAR-RPPGLTEEVVRIRRTRE 396
>UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX27;
n=34; Bilateria|Rep: Probable ATP-dependent RNA helicase
DDX27 - Homo sapiens (Human)
Length = 796
Score = 124 bits (298), Expect = 6e-27
Identities = 71/232 (30%), Positives = 126/232 (54%), Gaps = 4/232 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D L +L+AI GF+ P+ +Q CIP +LG DI A +G GKTA F L L++
Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 279
Query: 435 L--EPSESHV-YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L +P ++ V VLV+ TREL Q+ + +++ + + + GG+ ++ E L+
Sbjct: 280 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCN-ITTCLAVGGLDVKSQEAALR- 337
Query: 606 ACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
A P I++ TPGR++ ILDE D+ML+ ++EI R H +
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEY-FEEQMKEIIRMCSHHR 396
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
Q M+FSAT++ E++ + +++P+ ++V + L+Q +++++ N +
Sbjct: 397 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPF-LRQEFIRIRPNRE 447
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 123 bits (297), Expect = 8e-27
Identities = 71/233 (30%), Positives = 118/233 (50%)
Frame = +3
Query: 240 IHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL 419
+ S F + L IL + G+E PS +Q + IP + G D+L QA++G GKTA F L
Sbjct: 6 VASPTFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFAL 65
Query: 420 ATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L +L+ VLV+ TRELA Q++ + ++ + + G+ V GG ++ L
Sbjct: 66 PLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGL 125
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+ ++VGTPGR++ +LDE D+ML + DV+ + +TP
Sbjct: 126 RRGA-QVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLR-MGFIDDVKRVVSDTPKD 183
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
Q + FSATL EI + ++ DP+ + + + K G++Q V+++ K
Sbjct: 184 AQRVFFSATLPDEISRIVNHYLVDPLRIAIETKTK-TAEGIEQRLVRIEGGAK 235
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 123 bits (296), Expect = 1e-26
Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 4/209 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L I +A+ + G++ PS +Q + IP + G D++ A++G GKTA F L L+
Sbjct: 3 FSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 435 LEPSES----HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L + LV+ TRELA Q+S+ E + KY+ +R +V FGG+PI + L+
Sbjct: 63 LSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQKLR 121
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
++V TPGR+L +LDE D+ML+ + RD+++I P +
Sbjct: 122 HGVD-VLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLD-MGFIRDIKKILALLPAKR 179
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
Q +MFSAT S EIR + K + P+E+ V
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNQPVEISV 208
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 123 bits (296), Expect = 1e-26
Identities = 64/223 (28%), Positives = 123/223 (55%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
+ EI + P+ VQ + IP + D++ QA++G GKT F+L L+++ +
Sbjct: 10 ISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILERVNVEK 69
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 629
+ L++ TRELA QI+ E ++ ++ + G+ + +GG +++ LK + HI++G
Sbjct: 70 PTIQALIITPTRELAIQITAETKKLAE-VKGINILAAYGGQDVEQQLRKLKGSI-HIIIG 127
Query: 630 TPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATL 809
TPGR+L +LDE D+ML + RDV++I + P +Q M FSAT+
Sbjct: 128 TPGRLLDHLRRKTINLGKLSMLVLDEADQMLH-MGFLRDVEDIMTHIPKRRQNMFFSATM 186
Query: 810 SKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
++R + +++M+DP+++ V + ++ L ++Q ++ + K
Sbjct: 187 PNQVRTLAEQYMKDPVQIQVQSK-RVTLDEIRQVVIETTDRGK 228
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 123 bits (296), Expect = 1e-26
Identities = 74/237 (31%), Positives = 119/237 (50%)
Frame = +3
Query: 216 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 395
E+ G V+ + D L E+++AI G+ + VQ IP + D++ +A +G
Sbjct: 2 EINGEQVN-EVVNYADLGLSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGT 60
Query: 396 GKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMP 575
GKT F + ++ ++P V LV+ TRELA QI E ++ GVR +GG P
Sbjct: 61 GKTFAFGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAP 120
Query: 576 IQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQE 755
I+K LK P IVV TPGR++ +LDE D+ML+ + DV
Sbjct: 121 IEKQITTLKKH-PQIVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLD-MGFIHDVTR 178
Query: 756 IFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
I K + +FSAT+S+E+ + + +DP+E+ V + + K +QQ+ + L+
Sbjct: 179 ILDQIKSRKNLGLFSATISREVMDISWVYQRDPVEIVVRPDEENK-PDIQQYRIDLE 234
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 123 bits (296), Expect = 1e-26
Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 2/222 (0%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIP--QAVLGMDILCQAKSGMGKTAVFVLATLQQLEP 443
L P +L+ + GF PSE+Q I + ++ QA+SG GKT F + L +++
Sbjct: 98 LPPALLQGVYSYGFRAPSEIQAIAIGAIRDPSNRHVIAQAQSGTGKTGAFSIGVLSKIDV 157
Query: 444 SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIV 623
S+ LV+ TRELA QI ++ + G+ +++F GG D + + PHI
Sbjct: 158 SQKTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGAQRVVDAQARAASHPHIC 217
Query: 624 VGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSA 803
+ TPGR L +LDE D+ML S + V +I P Q+++FSA
Sbjct: 218 ICTPGRALDLIVSGHLRVQNFKMAVLDEADQML-SDNFIEQVNDIMEYFPEDVQILLFSA 276
Query: 804 TLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKE 929
T+S+ I + FM DP + + E +L L G++Q YV ++E
Sbjct: 277 TISQSIFHIMNTFMNDPFRILIKKE-QLTLEGIKQFYVDVQE 317
>UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase
MJ0669; n=11; cellular organisms|Rep: Probable
ATP-dependent RNA helicase MJ0669 - Methanococcus
jannaschii
Length = 367
Score = 123 bits (296), Expect = 1e-26
Identities = 78/236 (33%), Positives = 131/236 (55%), Gaps = 1/236 (0%)
Frame = +3
Query: 234 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG-MDILCQAKSGMGKTAV 410
+ + F + L IL AI + GFE P+++Q + IP + +I+ QA++G GKTA
Sbjct: 1 MEVEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTAS 60
Query: 411 FVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
F + ++ + + + +++ TRELA Q++ E E K ++++ +GG I
Sbjct: 61 FAIPLIELVNENNG-IEAIILTPTRELAIQVADEIESL-KGNKNLKIAKIYGGKAIYPQI 118
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
+ LK A +IVVGTPGRIL FILDE D+ML ++ +DV++I
Sbjct: 119 KALKNA--NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML-NMGFIKDVEKILNAC 175
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
K++++FSAT+ +EI + KK+M D Y +AK+ + ++Q YV++ ENE+
Sbjct: 176 NKDKRILLFSATMPREILNLAKKYMGD----YSFIKAKINAN-IEQSYVEVNENER 226
>UniRef50_A4QTR1 Cluster: ATP-dependent RNA helicase DBP9; n=4;
Ascomycota|Rep: ATP-dependent RNA helicase DBP9 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 636
Score = 123 bits (296), Expect = 1e-26
Identities = 80/238 (33%), Positives = 125/238 (52%), Gaps = 7/238 (2%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
SS F D L P +L+A+ F+ P+ VQ + IP A+ G D+L +AK+G GKTA +VL
Sbjct: 42 SSSFADLGLDPRLLQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPI 101
Query: 426 LQ------QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMS-GVRVSVFFGGMPIQK 584
LQ Q+ P +++ L++ TREL Q++KE ERFS + + V+V +
Sbjct: 102 LQAVLKRKQINPGATYISSLILVPTRELTVQVTKEVERFSAFCAKEVQVVGLTDKVSDAV 161
Query: 585 DEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFR 764
+L+++ P IVV TP +LDE D +L S D++++ R
Sbjct: 162 QRSLLQSSSPDIVVSTPSTAWRNVDSGALSLDKLTHLVLDEADLVL-SYGYDEDLEKVAR 220
Query: 765 NTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
P G Q +M SATL+ EI + F++DP+ + +E + + Q+ VK E+EK
Sbjct: 221 GLPKGVQTVMTSATLTDEIDTLKGIFLRDPV-LLDLEEPDAEGSEITQYIVKCGEDEK 277
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 122 bits (295), Expect = 1e-26
Identities = 66/222 (29%), Positives = 124/222 (55%), Gaps = 1/222 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D + P+I+ A + GF+HP+ +Q + IP+A+ D++ A++G GKTA F + LQ
Sbjct: 106 FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQA 165
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L + + V+ TRELA+QIS++ E + GVR + GGM + + + + P
Sbjct: 166 LWDNPKPFFACVLAPTRELAYQISQQVEALGSTI-GVRSATIVGGMDMM-SQSIALSKRP 223
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
H++V TPGR+ + ++DE D++L+ +D + ++ ++ P ++ M
Sbjct: 224 HVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLD-MDFGPIIDKLLQSIPRERRTM 282
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
+FSAT++ ++ + + +++P+ V V D + L+QHY+
Sbjct: 283 LFSATMTTKVAKLQRASLKNPVRVEV-DTKYTTVSTLKQHYM 323
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 122 bits (294), Expect = 2e-26
Identities = 70/210 (33%), Positives = 113/210 (53%)
Frame = +3
Query: 279 EILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHV 458
+IL + CGF+ PS +Q + IP G D++ +AKSG GKT VF + +L+ ++ S V
Sbjct: 6 KILDGLSVCGFQRPSPIQLKAIPLGRCGFDLIMRAKSGTGKTLVFCIISLEMIDIDISSV 65
Query: 459 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 638
VL++ TRE+A QI++ + + ++V VF GG+ I+ D++ + I VG PG
Sbjct: 66 QVLILAPTREIAVQIAQVFSSVGCEIKDLKVEVFIGGLAIENDKKKVNNC--QIAVGAPG 123
Query: 639 RILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKE 818
RI F+LDE DK++E+ ++D+ IF P KQV+ SAT +
Sbjct: 124 RIRHLIDKGFLKVENVRLFVLDEADKLMET-SFQKDINYIFSKLPLSKQVIASSATYPGD 182
Query: 819 IRPVCKKFMQDPMEVYVXDEAKLKLHGLQQ 908
+ + +M P+ V + + L GL+Q
Sbjct: 183 LEIFLQTYMCSPVLVSPNNNEPI-LIGLRQ 211
>UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducible
ATP-independent RNA helicase; n=2;
Enterobacteriaceae|Rep: Cold-shock DEAD-box protein A,
inducible ATP-independent RNA helicase - Blochmannia
floridanus
Length = 487
Score = 122 bits (294), Expect = 2e-26
Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 1/208 (0%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
+ F D L I+ + + G++ P +Q +CIP + G D+L A +G GKTA F+L L
Sbjct: 6 NSFVDLGLNTYIVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLLPLL 65
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG-VRVSVFFGGMPIQKDEEVLKT 605
Q ++ + V L++ TRELA QI F K +S + ++V +GG + LK
Sbjct: 66 QNIDIKQRFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFNDLKK 125
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
PHI++GTPGR+L I+DE D+ML + D++ I R P +Q
Sbjct: 126 N-PHIIIGTPGRLL-DHLSRGLDISKLKTLIIDEADEMLR-MGFIEDIEHIIRYVPTHRQ 182
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYV 869
+FSATL IR + KFM +P E+Y+
Sbjct: 183 TALFSATLPVSIRKLSYKFMCNPKEIYI 210
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 122 bits (293), Expect = 2e-26
Identities = 66/202 (32%), Positives = 106/202 (52%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F L IL + G+E PS +Q +CI + DI+ QA++G GKTA FVL L
Sbjct: 12 SKFERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLL 71
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
++ + + +L++ TRELA Q+S+ + +++ M G V +GG LK
Sbjct: 72 DKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKRG 131
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
H +VGTPGR++ F+LDE D+ML+ + D++ I + P +Q+
Sbjct: 132 V-HAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLK-MGFIDDIKWIMQRIPEQRQI 189
Query: 789 MMFSATLSKEIRPVCKKFMQDP 854
+FSAT+ I+ + K+F+ P
Sbjct: 190 ALFSATMPNVIKKIAKQFLNQP 211
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 121 bits (292), Expect = 3e-26
Identities = 72/207 (34%), Positives = 108/207 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L EI++A+ + P+ +Q + IP A+ G DI+ ++K+G GKTA F + +
Sbjct: 6 FTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICES 65
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ E+ LV+ TRELA+Q+ E + M V+V V FGG P K LK
Sbjct: 66 IVWEENLPQALVLEPTRELAYQVKDEIFNVGR-MKRVKVPVVFGGFPFDKQALTLKQK-S 123
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVVGTPGR+L I+DE D ML+ + DV+ I P +M+
Sbjct: 124 HIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLD-MGFLDDVKRILSYLPENITIML 182
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXD 875
FSAT+ + + + +FM P+EV + D
Sbjct: 183 FSATMGEALYALTDEFMNSPVEVKLED 209
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 121 bits (292), Expect = 3e-26
Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 5/205 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F F PEILRAI +CG+++ + VQ + IP G D+L A++G GKTA F L LQ+
Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62
Query: 435 LEP-----SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
+ S+ L++ TRELA Q++ +SK+M+ + V +GGM + + L
Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMN-ISVLTIYGGMKMATQAQKL 121
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
K I+V TPGR+L +LDE D+ML+ + D+Q+I +
Sbjct: 122 KQGA-DIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLD-MGFSTDIQKILQAVNKK 179
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDP 854
+Q ++FSAT S ++ + + P
Sbjct: 180 RQNLLFSATFSTAVKKLANDMLDKP 204
>UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinomonas sp. MWYL1|Rep: DEAD/DEAH box helicase
domain protein - Marinomonas sp. MWYL1
Length = 452
Score = 121 bits (292), Expect = 3e-26
Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L ++++I + GFE+ SE+Q E +P +LG DI+ QA++G GKTA F++A +
Sbjct: 73 FHDLNLPDRVIKSIAEMGFEYCSEIQAETLPMTLLGYDIIGQAQTGTGKTAAFLIAMISD 132
Query: 435 -----LEPSESHVYV--LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
LE ++ + L++ TRELA QI+ E + + + V GG+ +K +
Sbjct: 133 FLDYPLEEKRANNFARGLIIAPTRELAIQIADEAVKLTSNCH-LNVVTLVGGLSYEKQKI 191
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
L+T I+V TPGR+L +LDE D+ML S+ DV+ I R TP
Sbjct: 192 ALETENVDILVATPGRLLDFARSRKVQLGKVECLVLDEADRML-SMGFIPDVKSIIRMTP 250
Query: 774 H--GKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
H +Q M+FSAT K+I+ + +++ P EV V
Sbjct: 251 HKETRQTMLFSATFPKDIQALAQQWTYFPKEVSV 284
>UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=4;
Neisseria|Rep: Putative ATP-dependent RNA helicase -
Neisseria meningitidis serogroup C / serotype 2a (strain
ATCC 700532 /FAM18)
Length = 483
Score = 121 bits (292), Expect = 3e-26
Identities = 79/242 (32%), Positives = 130/242 (53%), Gaps = 8/242 (3%)
Frame = +3
Query: 237 SIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFV 416
+I S+ F L E++ A+ G+E+P+ +Q IP+A+ G D+L A++G GKTA F+
Sbjct: 25 TIMSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFM 84
Query: 417 LATLQQLE--------PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 572
L +L++L+ P+ V +LV+ TRELA QI + + + K + +R +V FGGM
Sbjct: 85 LPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGM 143
Query: 573 PIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQ 752
+ K L+ C IVV T GR+L +LDE D+ML+ + D++
Sbjct: 144 NMDKQTADLRAGC-EIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLD-MGFIDDIR 201
Query: 753 EIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKEN 932
+I + P +Q ++FSAT S IR + + FM P V V + + ++QH + +
Sbjct: 202 KIMQMLPKQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNAN-VEQHIIAVDTI 260
Query: 933 EK 938
+K
Sbjct: 261 QK 262
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 121 bits (291), Expect = 4e-26
Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 2/232 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L P + RA+ D GF PS +Q IP A+ G D++ QA++G GKTA F + L+Q
Sbjct: 46 FDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQ 105
Query: 435 LEPSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
L+ E +V+ TRELA Q++ E ER ++ + ++V GG + + L+
Sbjct: 106 LDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVP-TEIAVLSGGKNMNRQLRQLENG 164
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
+VVGTPGR+ +LDE D+ML+ + R ++ I R P +Q
Sbjct: 165 -TQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLD-IGFRPQIERIMRKCPRNRQT 222
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNR 944
++ SATL +R + + +M +P+ + + ++ + ++Q Y + +++K R
Sbjct: 223 LLLSATLPPVVRRLAESYMHEPVVIDCCRD-EMAVDTIEQRYFTIAQDDKVR 273
>UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 783
Score = 121 bits (291), Expect = 4e-26
Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 4/228 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L +L+A+ GF P+ +Q + IP A+ G DIL A +G GKTA F+L L++
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251
Query: 435 LEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L +S + VL++ TRELA Q E +++ S + + GG+ K +EV
Sbjct: 252 LLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQF-SNITSCLIVGGLS-NKAQEVELR 309
Query: 606 ACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
P +V+ TPGR++ ILDE D++L+ + + ++ +I + P +
Sbjct: 310 KSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLD-MGFKDEINKIVESCPTNR 368
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
Q M+FSATL+ E++ + K +Q P+ V V D L+Q +VK+K
Sbjct: 369 QTMLFSATLNDEVKTLAKLSLQQPIRVQV-DALMQVTSTLEQEFVKIK 415
>UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqfR;
n=12; Bacillaceae|Rep: Probable ATP-dependent RNA
helicase yqfR - Bacillus subtilis
Length = 438
Score = 121 bits (291), Expect = 4e-26
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 2/207 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + LKP I+ A+ GF P+++Q IP + ++ Q+++G GKT ++L L +
Sbjct: 6 FELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNK 65
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG--VRVSVFFGGMPIQKDEEVLKTA 608
++P++ V V++ TRELA QI +E + ++ G +R F GG QK + LK
Sbjct: 66 IDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQ 125
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
PH+VVGTPGRI ++DE D ML+ + DV I P Q+
Sbjct: 126 -PHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLD-MGFLADVDYIGSRMPEDLQM 183
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYV 869
++FSAT+ ++++P KK+M++P +V
Sbjct: 184 LVFSATIPEKLKPFLKKYMENPKYAHV 210
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 121 bits (291), Expect = 4e-26
Identities = 63/201 (31%), Positives = 105/201 (52%)
Frame = +3
Query: 267 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS 446
+L P L + + G+ + VQ +P + G D+ QAK+G GKTA F L LQQ++ S
Sbjct: 9 VLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS 68
Query: 447 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 626
LV+C TRELA Q++ E R ++++ ++ GG P + L+ A PHI+V
Sbjct: 69 LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA-PHIIV 127
Query: 627 GTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSAT 806
TPGR+L ++DE D+ML+ + + ++ R P +Q ++FSAT
Sbjct: 128 ATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD-MGFSDAIDDVIRFAPASRQTLLFSAT 186
Query: 807 LSKEIRPVCKKFMQDPMEVYV 869
+ I + + +DP+ + +
Sbjct: 187 WPEAIAAISGRVQRDPLAIEI 207
>UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=20; Bacillales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 436
Score = 120 bits (290), Expect = 5e-26
Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 3/224 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + KP ++ A+ + F P+ +Q + P G+ ++ Q+++G GKT ++L TL +
Sbjct: 6 FTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNR 65
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG---VRVSVFFGGMPIQKDEEVLKT 605
+ P V +++ TRELA QI +E + +K+ + + GG Q+ E LK
Sbjct: 66 INPGREEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKK 125
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
PHIVVGTPGRI I+DE D ML+ + DV +I P Q
Sbjct: 126 Q-PHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLD-MGFIHDVDKIAARMPKNLQ 183
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
+++FSAT+ ++++P KK+M++P +++ K G +HY+
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHI--NPKQVAAGNIEHYL 225
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 120 bits (289), Expect = 7e-26
Identities = 67/228 (29%), Positives = 119/228 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F ++ L E+ RA+ G+EHP+EVQ E IP A+ D++ ++++G GKTA F + +
Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+E E+ LV+ TRELA Q+ ++ ++ ++ + +G P + + LK
Sbjct: 66 VEWEENKPQALVLTPTRELAVQVKEDITNIGRF-KRIKAAAIYGKSPFARQKLELKQK-T 123
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVVGTPGR+L ++DE D+ML ++ V+ I P + M+
Sbjct: 124 HIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEML-NMGFIDQVEAIIDELPTKRMTML 182
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSATL +++ + + +M P + + A + ++ +++E EK
Sbjct: 183 FSATLPEDVERLSRTYMNAPTHIEI-KAAGITTDKIEHTLFEVREEEK 229
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 120 bits (289), Expect = 7e-26
Identities = 63/197 (31%), Positives = 108/197 (54%)
Frame = +3
Query: 252 GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ 431
GF D L I A+ + G+ +P+ VQ A+ G D++ ++K+G GKTA F L L+
Sbjct: 30 GFDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLE 89
Query: 432 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
++ E V L++C TRELA Q++ E + +K+ G++++ +GG +++ E+ L+
Sbjct: 90 KIPADERRVRALILCPTRELALQVADELKMLAKH-KGLKIAAIYGGASMKQQEDALEEGT 148
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
P I+VGTPGR+ +LDE D+ML +V I P +QV+
Sbjct: 149 P-IIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQ-GFYEEVTRILDRLPKTRQVL 206
Query: 792 MFSATLSKEIRPVCKKF 842
+FSAT+ +I+ + ++
Sbjct: 207 LFSATVPTDIQNLIARY 223
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 120 bits (289), Expect = 7e-26
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 3/231 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F F L +IL+++ G+ PS VQ E IP+ + G +++ ++K+G GKTA F + +
Sbjct: 5 FEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCEN 64
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ +++ L++ TRELA Q+ E + + VR S FG I+ LK
Sbjct: 65 INVDYNNIQALIVVPTRELALQVKDEISDIGR-LKKVRCSAIFGKQSIKDQIAELKQRV- 122
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVV TPGRIL ++DE DKM +++I N P K V +
Sbjct: 123 HIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNK-GFVEQMEKILLNLPKEKIVSL 181
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXD---EAKLKLHGLQQHYVKLKENEK 938
FSAT+ +EI+ +C+K+M D + + + + K + +K EK
Sbjct: 182 FSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREK 232
>UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3;
Thermoprotei|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 434
Score = 120 bits (289), Expect = 7e-26
Identities = 71/228 (31%), Positives = 123/228 (53%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + +K +L A+ D GFE +Q IP + G D++ QA +G GKT + ++ LQ+
Sbjct: 4 FEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISMLQE 63
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ + L++ TRELA QI++E ++F+KY + VR +GG + + LK
Sbjct: 64 IKEG-GGIQGLIVAPTRELAVQITEEVKKFAKY-TKVRPVAIYGGQSMGVQLDALKRGA- 120
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
I+V TPGR++ +LDE D ML+ + D+Q I TP K + +
Sbjct: 121 EILVATPGRLIDHIKRGSISIDRVTHLVLDEADTMLD-MGFIDDIQFILDLTPDEKVMSL 179
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSAT+ EI + ++++++P + ++ D L G+ Q Y+ +++ EK
Sbjct: 180 FSATMPIEILRLSEEYLKNPKQ-FLLDADDLSGEGIDQSYLVIRDREK 226
>UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|Rep:
MGC114699 protein - Xenopus laevis (African clawed frog)
Length = 758
Score = 120 bits (288), Expect = 9e-26
Identities = 71/232 (30%), Positives = 126/232 (54%), Gaps = 4/232 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D L +L+AI F P+ +Q CIP +LG DI A +G GKTA F+L L++
Sbjct: 183 FQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLER 242
Query: 435 L--EPSESHV-YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L +P E+ V VLV+ TREL Q+ + +++ + V + GG+ ++ E L++
Sbjct: 243 LIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQF-TEVTTCLAVGGLDVKTQEAALRS 301
Query: 606 ACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
P +++ TPGR++ ILDE D+ML+ ++EI R H +
Sbjct: 302 G-PDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEY-FEEQMKEIIRLCSHQR 359
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
Q ++FSAT+S+E++ + +++P+ ++V + L+Q +V+++ N +
Sbjct: 360 QTLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPF-LRQEFVRIRPNRE 410
>UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinekea
sp. MED297|Rep: ATP-dependent RNA helicase - Reinekea
sp. MED297
Length = 534
Score = 120 bits (288), Expect = 9e-26
Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 8/236 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L ++RAI + G+E+ S +Q +P A+ G D + +A++G GKTA F++ +
Sbjct: 29 FHDLFLPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITAITD 88
Query: 435 -LEPSESHVYV-----LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
LE YV L++ TRELA QI+++ + +KY S ++V+ GGM K ++
Sbjct: 89 LLEHRLEEQYVGEPRALILAPTRELALQIAEDAKALTKY-SRLKVAAVVGGMDFDKQKQQ 147
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP- 773
L I+V TPGR++ I+DE D+ML+ + D++ I R TP
Sbjct: 148 LHEQRTDILVATPGRLIDFMNRKAVFLDQIEMLIIDEADRMLD-MGFIPDIKTIVRATPR 206
Query: 774 -HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+Q ++FSAT S++I + +++ DP+ V V + K ++QH + EK
Sbjct: 207 TENRQTLLFSATFSQDILNLAQRWTNDPVRVEVEPKVK-TAEDVEQHVYLVSSEEK 261
>UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=18;
Alphaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Jannaschia sp. (strain CCS1)
Length = 644
Score = 119 bits (287), Expect = 1e-25
Identities = 65/227 (28%), Positives = 123/227 (54%), Gaps = 3/227 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L P++ +AIV+ G+E P+ +Q IP A+ G D+L A++G GKTA F L +
Sbjct: 13 FADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITM 72
Query: 435 LEPSESHVYV---LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L + + LV+C TRELA Q+++ ++ ++K++ + ++ GG+ ++ E+ +
Sbjct: 73 LARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVK-LTKALLIGGVSFKEQEQAIDK 131
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
+++ TPGR+L ++DE D+ML+ + D++ IF P +Q
Sbjct: 132 GV-DVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLD-MGFIPDIERIFGLVPFTRQ 189
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
+ FSAT++ EI + F+ +P ++ V ++ ++Q ++ K
Sbjct: 190 TLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSA-TIEQRLIEFK 235
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 119 bits (286), Expect = 2e-25
Identities = 66/218 (30%), Positives = 116/218 (53%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
L E+ +A+ D G++ P+ +Q + IP A+ G DIL QA +G GKT F + +++L+ +
Sbjct: 7 LSLELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVEKLQKGK 66
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 629
V LV+ TRELA Q+ ++ +KY + VF+GG ++++ ++L+ I++G
Sbjct: 67 PDVKALVLTPTRELAIQVKEQIYMLTKY-KRLSSYVFYGGTSVKQNLDILQNKNVDILIG 125
Query: 630 TPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATL 809
TPGRI +LDE D+ML+ + D++ I P + MFSAT+
Sbjct: 126 TPGRIKDLIDRKALNLSKVEYLVLDEFDQMLD-MGFIEDIEYIISFLPKERTTYMFSATV 184
Query: 810 SKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKL 923
I + K+F++ + +LK +++ +KL
Sbjct: 185 PSRIELLAKRFLKSDFKFVKVQSVELK-PNIEEKMIKL 221
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 119 bits (286), Expect = 2e-25
Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 5/247 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF L IL A+ + ++ P+++Q IP + G DIL A++G GKTA F L L++
Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62
Query: 435 LEPSESH-----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L E + VLV+ TRELA Q+++ + ++K + + V FGG+ + L
Sbjct: 63 LSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPV-FGGVSSYPQIQAL 121
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
K+ IVV TPGR+L + DE D+M + + D+++I + P
Sbjct: 122 KSGI-DIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFD-MGFIHDIKQIVKMLPEK 179
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNRNSSNY 959
+Q ++FSAT E+ +C ++DP+ + + ++ L+ +Q+ V L + +K N
Sbjct: 180 RQNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQR--VILVDRDKKMELLNE 237
Query: 960 XMXXSSI 980
SI
Sbjct: 238 VFGVESI 244
>UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep:
RNA helicase - Guillardia theta (Cryptomonas phi)
Length = 381
Score = 119 bits (286), Expect = 2e-25
Identities = 77/242 (31%), Positives = 125/242 (51%), Gaps = 2/242 (0%)
Frame = +3
Query: 219 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 398
+K + + F+D LK ++L + D G+EHPS +Q + IP A+ DIL ++K+G G
Sbjct: 5 IKNNLYENENLKFKDLKLKNDLLLGLNDLGYEHPSLIQEKIIPLAINNKDILARSKNGTG 64
Query: 399 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 578
KT F++ LQ + + +++ TRELA QIS + SKYM + + V G+
Sbjct: 65 KTLSFLIPILQNIYSESYGIESIILVPTRELALQISSLLRKLSKYMKNINLQV--TGVDS 122
Query: 579 QKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML--ESLDMRRDVQ 752
+ D+ + +I++GTPG+I +LDE DK+L E D +
Sbjct: 123 KIDKNNIDF---NILLGTPGKIY-DCLCKNEVNKTCKTLVLDEADKLLSGEVYDTTLKIL 178
Query: 753 EIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKEN 932
++N Q+M+FSAT I+ + K +M +P+EV + +E L L + Q Y EN
Sbjct: 179 NHYKNKI--SQIMLFSATFPYHIQNIKKMYMNNPIEVNLMNE--LVLEKISQFYAYTSEN 234
Query: 933 EK 938
+K
Sbjct: 235 KK 236
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 118 bits (285), Expect = 2e-25
Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 1/204 (0%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLEPS 446
L+P I + + GF+ PS +Q + IP + DI+ QA++G GKTA F L +Q++EP
Sbjct: 9 LEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQKIEPG 68
Query: 447 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 626
L++C TRELA Q+++E + F K G+ +GG PI + LK +VV
Sbjct: 69 LKKPQALILCPTRELAIQVNEEIKSFCK-GRGITTVTLYGGAPIMDQKRALKKGV-DLVV 126
Query: 627 GTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSAT 806
TPGR + +LDE D+ML ++ DV+++ + +P + V+MFSAT
Sbjct: 127 ATPGRCIHFIEDGKLELDSLEYLVLDEADEML-NMGFVEDVEKVLKASPDDRTVLMFSAT 185
Query: 807 LSKEIRPVCKKFMQDPMEVYVXDE 878
+ ++ + + +M + + + E
Sbjct: 186 MPPRLKKIAESYMHNSITIKAKSE 209
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 118 bits (285), Expect = 2e-25
Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 5/233 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L P I++ I + PS +Q + +P A+ G D+L A++G GKTA F + LQ
Sbjct: 120 FNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMLQH 179
Query: 435 --LEP---SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
++P LV+ TRELA QI KE + FS+ + ++ + GG I+K L
Sbjct: 180 CLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSEL 239
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+ A I V TPGR + +LDE D+ML+ + ++EI R+ P
Sbjct: 240 R-AGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLD-MGFEPQIREIMRSLPEK 297
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
Q ++FSAT+ EI + K+++ +P++V V + + Q VK+ +EK
Sbjct: 298 HQTLLFSATMPVEIEALAKEYLANPVQVKV-GKVSSPTTNVSQTLVKVSGSEK 349
>UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Opitutaceae bacterium TAV2|Rep: DEAD/DEAH box
helicase domain protein - Opitutaceae bacterium TAV2
Length = 536
Score = 118 bits (284), Expect = 3e-25
Identities = 66/221 (29%), Positives = 112/221 (50%)
Frame = +3
Query: 207 PKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAK 386
P K V + + F L + A+ + G+ P+ +Q + +P + G D+ A+
Sbjct: 119 PIKPVTPVEIPPQDTAFSKLGLNDALAFAVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQ 178
Query: 387 SGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 566
+G GKTA F L L +L E + LV+ TRELA Q+ + ++++SKY + + +V +G
Sbjct: 179 TGTGKTAAFALPILHKLGAHERRLRCLVLEPTRELALQVEEAFQKYSKY-TDLTATVVYG 237
Query: 567 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRD 746
G+ K E L+ +V TPGR+L +LDE D+ML+ + D
Sbjct: 238 GVGYGKQREDLQRGV-DVVAATPGRLLDHIEQGTMTLADVEILVLDEVDRMLD-MGFLPD 295
Query: 747 VQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
V+ I + P +Q + FSATL E+ + ++DP+E+ +
Sbjct: 296 VKRIVQQCPQARQTLFFSATLPPELAQLASWALRDPVEIKI 336
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 118 bits (284), Expect = 3e-25
Identities = 70/212 (33%), Positives = 114/212 (53%), Gaps = 4/212 (1%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S F L IL+AI D G+ PS +Q + IP + G D++ A++G GKTA F L
Sbjct: 4 SMSFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPL 63
Query: 426 LQQLEPSE----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
L+ L E + V LV+ TRELA Q+++ + + +++S ++ +V FGG+ I
Sbjct: 64 LEILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLS-LKSTVVFGGVKINPQMM 122
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
L+ I++ TPGR++ +LDE D+ML+ + D+++I P
Sbjct: 123 ALRRGA-DILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLD-MGFIHDIKKILAILP 180
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
+Q ++FSAT S EIR + K + +P+E+ V
Sbjct: 181 KKRQNLLFSATFSPEIRQLAKGLVNNPIEISV 212
>UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Pseudomonas aeruginosa
Length = 397
Score = 118 bits (284), Expect = 3e-25
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 9/237 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF L P ++ AI D GF + + +Q + + + G D + +A++G GKTA F+++ + Q
Sbjct: 11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQ 70
Query: 435 L----EPSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
L P E ++ L++ TREL QI+K+ +KY +G+ V F GGM K +
Sbjct: 71 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY-TGLNVMTFVGGMDFDKQLK 129
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
L+ I+V TPGR+L +LDE D+ML+ + V++I R TP
Sbjct: 130 QLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQVRQIIRQTP 188
Query: 774 H--GKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
H +Q ++FSAT + ++ + K++ DP V + E + ++QH + ++K
Sbjct: 189 HKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPE-NVASDTVEQHVYAVAGSDK 244
>UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DRS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 752
Score = 118 bits (284), Expect = 3e-25
Identities = 66/231 (28%), Positives = 129/231 (55%), Gaps = 4/231 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L +L+ + G+ PS +Q IP A+LG DI+ A +G GKTA F++ +++
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 435 L--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L +P++ + V+V+ TRELA Q++ ++ ++++SG+ + GG+ +++ E++LK+
Sbjct: 293 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKS 352
Query: 606 ACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
P IV+ TPGR + ++DE D+MLE + ++ EI P +
Sbjct: 353 R-PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEE-GFQDELNEIMGLLPSNR 410
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENE 935
Q ++FSAT++ +I+ + ++ P+ + + D K L Q +V++++ +
Sbjct: 411 QNLLFSATMNSKIKSLVSLSLKKPVRIMI-DPPKKAATKLTQEFVRIRKRD 460
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 118 bits (283), Expect = 4e-25
Identities = 61/228 (26%), Positives = 120/228 (52%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + + +A+ + F + +Q IP+ + G D++ QA++G GKT F + +++
Sbjct: 5 FEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPIIEK 64
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+EP L++C TREL Q+ +E ++ ++ +R++V +GG K L+ A P
Sbjct: 65 IEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALE-AKP 123
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
H+++ TPGR + LDE D+ML+ + + ++ I + P +Q ++
Sbjct: 124 HLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLK-MGFQEALETILKKIPEERQTVL 182
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
FSATL I+ + K+ +D + V + + ++ ++Q+Y +KE +K
Sbjct: 183 FSATLPPFIKKIASKYQKDTKILQVPVK-NIAVNAIEQNYFLVKEVDK 229
>UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3;
Sphingobacteriales|Rep: DEAD box-related helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 437
Score = 118 bits (283), Expect = 4e-25
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 2/232 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF +L ++ GF P+ +Q E IP + D++ A++G GKTA ++L L +
Sbjct: 3 FNDFNFNSGLLDSLSSMGFNKPTPIQTEAIPVIMSNSDLVACAQTGTGKTAAYMLPILHK 62
Query: 435 -LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE-VLKTA 608
+E + + LV+ TRELA QI ++ E FS +++ ++V+ GG D++ T
Sbjct: 63 IIESNTDSLDTLVLVPTRELAIQIDQQIEGFSYFINVSSIAVYGGGDGATWDQQRKALTD 122
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
+IV+ TPGR+LA +LDE D+ML+ + D+ + P +Q
Sbjct: 123 GANIVIATPGRLLAQLQSGTANLKQIKHLVLDEADRMLD-MGFYDDIVRVISYLPTERQT 181
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNR 944
+MFSAT+ ++R + K M+DP ++ + G+ Q + E +KN+
Sbjct: 182 IMFSATMPTKMRALANKLMKDPQQINI--AISKPAEGILQQAYLVYEEQKNK 231
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 118 bits (283), Expect = 4e-25
Identities = 70/209 (33%), Positives = 111/209 (53%)
Frame = +3
Query: 243 HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA 422
+S G DFL E L+++ G+E + +Q IP + G D++ A++G GKTA F L
Sbjct: 12 NSLGLPDFL--QENLQSL---GYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALP 66
Query: 423 TLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L ++ LV+C TRELA Q+++ + + + M G+R+ FGG +++ + L+
Sbjct: 67 ILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLR 126
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
HIVV TPGR+L +LDE D+ML + DV I TP +
Sbjct: 127 EG-THIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLR-MGFIDDVDTILAKTPKER 184
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
+V +FSAT+ K +R + K + +P E+ V
Sbjct: 185 KVALFSATMPKRVRDIANKHLSNPAEISV 213
>UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX47;
n=32; Eukaryota|Rep: Probable ATP-dependent RNA helicase
DDX47 - Homo sapiens (Human)
Length = 455
Score = 118 bits (283), Expect = 4e-25
Identities = 67/230 (29%), Positives = 125/230 (54%), Gaps = 1/230 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D + + A G+ P+++Q E IP A+ G DI+ A++G GKT F L L
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L + ++ LV+ TRELAFQIS+++E + GV+ +V GG+ L P
Sbjct: 86 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-P 143
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
HI++ TPGR++ + ++DE D++L ++D +V +I + P ++
Sbjct: 144 HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFETEVDKILKVIPRDRKTF 202
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
+FSAT++K+++ + + +++P++ V + + + LQQ+Y+ + K+
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYIFIPSKFKD 251
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 118 bits (283), Expect = 4e-25
Identities = 66/230 (28%), Positives = 121/230 (52%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F+++ + +ILRA+ G+ P++VQ IP A+ D++ ++++G GKTA F +
Sbjct: 2 SHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLC 61
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
+ E+ L++ TRELA Q+ ++ ++ ++ + FG K + LK
Sbjct: 62 ELANWDENKPQALILTPTRELAVQVKEDITNIGRF-KRIKATAVFGKSSFDKQKAELKQK 120
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
HIVVGTPGR+L ++DE D+ML ++ V+ I ++ P +
Sbjct: 121 -SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEML-NMGFIEQVEAIIKHLPTERTT 178
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
M+FSATL ++I + +++MQ+P + V A L ++ ++++E K
Sbjct: 179 MLFSATLPQDIEKLSRQYMQNPEHIEV-KAAGLTTRNIEHAVIQVREENK 227
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 117 bits (282), Expect = 5e-25
Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 4/207 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L E +R+I + G+ P+ +Q IP+ + G DI+ A++G GKTA F+L ++
Sbjct: 26 FEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIEL 85
Query: 435 L----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L +P V+ LV+ TRELA Q+ + ++KY++ +R FGG+ I+ + L+
Sbjct: 86 LRAEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKYLA-LRSDAVFGGVSIRPQVKRLQ 144
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
I+V TPGR+L +LDE D+ML+ + RD++++ P +
Sbjct: 145 GGV-DILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLD-MGFIRDIKKVIEYLPKNR 202
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEV 863
Q MMFSAT S I+ + + DP+E+
Sbjct: 203 QNMMFSATFSTPIKKLALGLLNDPVEI 229
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 117 bits (282), Expect = 5e-25
Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 5/222 (2%)
Frame = +3
Query: 228 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 407
+++S+H S F L P IL+A+ + P +Q + IP + G DIL A++G GKTA
Sbjct: 3 THLSLHMS-FATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTA 61
Query: 408 VFVLATLQQLEP----SESHVYVLVMCHTRELAFQISKEYERFSKYM-SGVRVSVFFGGM 572
FVL LQ L+ H+ LV+ TRELA Q+ + ++ FS + + ++ +GG+
Sbjct: 62 SFVLPILQMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGV 121
Query: 573 PIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQ 752
I + ++++ I++ TPGR+L +LDE DKML +L + ++
Sbjct: 122 SI--NPQMIQLQGVEILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKML-NLGFKEEMA 178
Query: 753 EIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDE 878
IF+ P +Q ++FSATL K++ + + + DP+++ + E
Sbjct: 179 NIFKLLPQKRQNLLFSATLGKDVDTITEFLLHDPVKIEIIAE 220
>UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12;
Alphaproteobacteria|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 763
Score = 117 bits (282), Expect = 5e-25
Identities = 64/214 (29%), Positives = 113/214 (52%), Gaps = 3/214 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L + RAI + G+ HP+ +Q + IP ++G D+L A++G GKTA F L +
Sbjct: 225 FADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDI 284
Query: 435 LEPSESHVYV---LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L + + L++ TRELA Q+++ + ++ +Y+ + ++ GG + +VL
Sbjct: 285 LSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLK-LNHALLIGGESMNDQRDVLSK 343
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
+++ TPGR++ ++DE D+ML+ + DV+ I PH +Q
Sbjct: 344 GV-DVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLD-MGFIPDVERIVSLLPHNRQ 401
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKL 887
+ FSAT++ EIR + F+Q+P E+ V A +
Sbjct: 402 TLFFSATMAPEIRRLADAFLQNPKEITVAKPASV 435
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 117 bits (281), Expect = 7e-25
Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 26/254 (10%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D+ LK E+L I + G+E PS +Q E IP A+ G DIL +AK+G GK+ +++ L++
Sbjct: 91 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPMLER 150
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ + H+ LV+ TRELA Q+S+ + +K++ GV+V GG + +D+ +
Sbjct: 151 IDLKKDHIQALVLVPTRELALQVSQISIQIAKHLGGVKVMATTGGTNL-RDDIMRLDETV 209
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDK-------------------------- 716
H+V+ TPGRIL ++DE K
Sbjct: 210 HVVIATPGRILDLMKKGVAKVDKVQIMVMDEVGKRTPKAALCGGVGAAGPCVWVVSPQAD 269
Query: 717 MLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLH 896
L S D V++I +Q++++SAT ++ K +Q P E+ + +E LK
Sbjct: 270 KLLSQDFVALVEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK-- 327
Query: 897 GLQQHYVKLKENEK 938
G+ Q+Y + E +K
Sbjct: 328 GITQYYAYVTERQK 341
>UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: ATP-dependent RNA
helicase - Neptuniibacter caesariensis
Length = 417
Score = 117 bits (281), Expect = 7e-25
Identities = 68/216 (31%), Positives = 115/216 (53%), Gaps = 5/216 (2%)
Frame = +3
Query: 306 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE----PSESHVYVLVM 473
G++ P+ +Q + IP + G D++ A++G GKTA FVL L++L P + + LV+
Sbjct: 20 GYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLEKLHSIPAPGNNLTHALVL 79
Query: 474 CHTRELAFQISKEYERFSKYM-SGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILA 650
TRELA Q+S+ +R+S+ +R +GG I + L C IVV TPGR+L
Sbjct: 80 VPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQSLSKGC-DIVVATPGRLLD 138
Query: 651 XXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPV 830
+LDE D+ML+ L ++ +I TP Q ++FSAT +++ +
Sbjct: 139 LMRKNALDLRGLKALVLDEADRMLD-LGFADELDDILDQTPGNVQTLLFSATFPDKVKEL 197
Query: 831 CKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
++ +++P+E+ V EA L L Q +++ N +
Sbjct: 198 TEELLRNPVEISVKQEATLP-DQLHQRAIEVDRNNR 232
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 116 bits (280), Expect = 9e-25
Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 3/226 (1%)
Frame = +3
Query: 267 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS 446
L++P IL+A+ G+ P+ +Q + IP + G D+L A++G GKTA F + LQ+L +
Sbjct: 8 LIEP-ILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQKLYKT 66
Query: 447 ESH--VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 620
+ + LV+ TRELA QI + +E + +Y +G++ +V FGG+ + + L++ I
Sbjct: 67 DHRKGIKALVLTPTRELAIQIGESFEAYGRY-TGLKHAVIFGGVGQKPQTDALRSGI-QI 124
Query: 621 VVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFS 800
+V TPGR+L F+LDE D+ML+ + D++ I + P +Q + FS
Sbjct: 125 LVATPGRLLDLISQGFISLSSLDFFVLDEADRMLD-MGFIHDIKRILKLLPARRQTLFFS 183
Query: 801 ATLSKEIRPVCKKFMQDPMEVYVXD-EAKLKLHGLQQHYVKLKENE 935
AT+ EI + + P +V V + + + Q ++V+ KE +
Sbjct: 184 ATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKK 229
>UniRef50_Q9FNM7 Cluster: DEAD-box ATP-dependent RNA helicase 26;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 26 - Arabidopsis thaliana (Mouse-ear cress)
Length = 850
Score = 116 bits (280), Expect = 9e-25
Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 11/224 (4%)
Frame = +3
Query: 195 TEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDIL 374
T+ + VK S + + F F L P L+AI D GFE + VQ +P + G D+L
Sbjct: 364 TDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVL 423
Query: 375 CQAKSGMGKTAVFVLATLQQL--EPSESH------VYVLVMCHTRELAFQISKEYERFSK 530
+AK+G GKT F+L ++ + P S + VLV+C TRELA Q + E K
Sbjct: 424 AKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLK 483
Query: 531 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI---LAXXXXXXXXXXXXXXFIL 701
Y + V V GG + ++ ++T I+V TPGR+ + +L
Sbjct: 484 YHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVL 543
Query: 702 DECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVC 833
DE D +L+ + RRD++ I P +Q +FSAT+ +E+R +C
Sbjct: 544 DEADHLLD-MGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQIC 586
>UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase drs1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 754
Score = 116 bits (280), Expect = 9e-25
Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 4/239 (1%)
Frame = +3
Query: 222 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 401
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 402 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 572
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 573 PIQKDEEVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDV 749
++ E+ L+ P IV+ TPGR + ++DE D+MLE ++
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED-GFADEL 426
Query: 750 QEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
EI + P +Q M+FSAT++ ++ + + + P+ V+V D K L Q +V+++
Sbjct: 427 NEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFV-DNKKTTAKLLTQEFVRVR 484
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 116 bits (279), Expect = 1e-24
Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 8/211 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L EIL A+ D G+ +P+ +Q + IP + G D++ A++G GKTA F L L +
Sbjct: 7 FAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLLYR 66
Query: 435 LE--------PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
L+ P+ V L+M TRELA QI + ++ KY++ +R +V FGG+ I+
Sbjct: 67 LQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLA-LRTAVVFGGINIEPQI 125
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
L+ A I+V TPGR+L +LDE D+ML+ + D++ +
Sbjct: 126 AALQ-AGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLD-MGFLPDIKRVMALL 183
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 863
+Q +MFSAT S EIR + ++ P+ +
Sbjct: 184 SPQRQSLMFSATFSGEIRKLADSLLKQPVRI 214
>UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 540
Score = 115 bits (277), Expect = 2e-24
Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 1/229 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + + P++L AI + G+ + +Q + IP + G DI A++G GKT F++ +
Sbjct: 3 FEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIHN 62
Query: 435 -LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
L + LV+ TREL QI++E ++ K+ G+R GG + + L+
Sbjct: 63 ILTKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKDLE-GL 121
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
I+V TPGR++ F+LDE D+ML+ + +D++ + + KQ +
Sbjct: 122 NGIIVATPGRLIDMIKSGSIDISNVEFFVLDEADRMLD-MGFIQDIRWLLHKCKNRKQTL 180
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
++SATLS E+ + +F+ +P+E+ + E K+ + Q V L EK
Sbjct: 181 LYSATLSVEVMRLAYRFLNEPVEIQINPE-KIITERIDQKIVHLGREEK 228
>UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Polynucleobacter sp. QLW-P1DMWA-1
Length = 500
Score = 115 bits (277), Expect = 2e-24
Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 11/228 (4%)
Frame = +3
Query: 213 KEVKGSYVSIHSSG--FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAK 386
KE K S+G F++F L +L+ + + GF + VQ + IP A+ G D+L ++
Sbjct: 5 KETKIESKDSKSTGTEFQNFALAASLLKNVAELGFTQATSVQAQVIPAALAGGDLLVSSQ 64
Query: 387 SGMGKTAVFVLATLQQL---EPSESHV------YVLVMCHTRELAFQISKEYERFSKYMS 539
+G GKTA F+L + QL P+ S V VLV+C TRELA Q++ + + M
Sbjct: 65 TGSGKTAAFLLPLINQLIEDNPNNSPVPGRAQPKVLVLCPTRELAQQVAADAVNLVRGMK 124
Query: 540 GVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKM 719
G+R++ GGMP K + LK A +VV TPGR+L ++DE D+M
Sbjct: 125 GIRIATVMGGMPYGKQIQALKGAL--LVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRM 182
Query: 720 LESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 863
L+ + D++ I + Q +MFSAT + +I + + D +
Sbjct: 183 LD-MGFADDLEAIDKRCAGRNQTLMFSATFAPKIMSLANELTTDAKRI 229
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 115 bits (277), Expect = 2e-24
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 2/207 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F +F L PE+L +I + P+ +Q IP A+ G DI+ A++G GKTA F + LQ
Sbjct: 100 FTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQT 159
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L + Y LV+ TRELAFQI + ++ M G+R GGM + + L P
Sbjct: 160 LYTAAQPYYALVLAPTRELAFQIKETFDALGSSM-GLRSVCIIGGMSMMEQARDLMRK-P 217
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLESLDMRRDVQEIFRNTP-HGKQV 788
H+++ TPGR++ + ++DE D+M++ LD + + +I + P H +
Sbjct: 218 HVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVDRMID-LDYAKAIDQILKQIPSHQRIT 276
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYV 869
+++AT+S+EI K+ + P++V +
Sbjct: 277 YLYTATMSREIEKF-KRSLNSPVQVEI 302
>UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3;
Sphingomonadales|Rep: DNA and RNA helicase - Zymomonas
mobilis
Length = 492
Score = 115 bits (276), Expect = 3e-24
Identities = 60/208 (28%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L E+L+A+ + G+E P+ VQ IP ++ D++ A++G GKTA FVL +
Sbjct: 3 FADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDI 62
Query: 435 LEPSESHVYV---LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L + L++ TRELA Q+++ +E++ KY + +S+ GG+P+ + + L+
Sbjct: 63 LAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHK-LSMSLLIGGVPMAEQQAALEK 121
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
+++ TPGR+L ++DE D+ML+ + D++ I P +Q
Sbjct: 122 GV-DVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLD-MGFIPDIETICTKLPTSRQ 179
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYV 869
++FSAT+ I+ + +F+ +P ++ +
Sbjct: 180 TLLFSATMPPAIKKLADRFLSNPKQIEI 207
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 115 bits (276), Expect = 3e-24
Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 1/224 (0%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVL-GMDILCQAKSGMGKTAVFVLATLQQLEPS 446
L +L + D GFE+P+E+Q + IP + D + A++G GKTA F L L ++ +
Sbjct: 20 LSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLPLLDLIDVN 79
Query: 447 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 626
V L++ TRELA QI + E+ SK++ + V FGG I ++ I+V
Sbjct: 80 SREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDIRRGA-QIIV 138
Query: 627 GTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSAT 806
TPGR++ +LDE D+ML ++ + D+ I + G+ + +FSAT
Sbjct: 139 ATPGRLMDLMKRREVKLDALKYMVLDEADEML-NMGFKEDIDFILSKSDTGRNIWLFSAT 197
Query: 807 LSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+++EI+ + +M P EV + + + ++ ++LK ++K
Sbjct: 198 MAREIKRIVDTYMVQPEEVRI-NPKNIVNKNIEHQSIQLKASDK 240
>UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: Probable ATP-dependent RNA
helicase - Oceanobacter sp. RED65
Length = 449
Score = 115 bits (276), Expect = 3e-24
Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 7/237 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+ F L IL+ I GF ++VQ + IP+A+ D++ A++G GKTA FV+ LQ
Sbjct: 2 FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61
Query: 435 L---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L + S L++ TRELA Q+ K+ + +K+ +G++ + GG K + L
Sbjct: 62 LLTHKAPNSGTRALILVPTRELAKQLLKQCQALAKF-TGIQSGMITGGQEF-KFQAALFR 119
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK- 782
P I++ TPGR++ FILDE D+ML+ + DV I N GK
Sbjct: 120 KNPEIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLD-MGFEEDVLTI-ANACSGKA 177
Query: 783 --QVMMFSATLSKE-IRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNR 944
Q ++FSATL + ++ V K+ DP E+ V D + + ++QHY+ L +++K++
Sbjct: 178 KPQTLLFSATLQQRGLKHVIKQIQNDPEEI-VVDSFRGEHSNIEQHYM-LADDDKHK 232
>UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=4;
Sphingobacteriales|Rep: Possible ATP-dependent RNA
helicase - Cytophaga hutchinsonii (strain ATCC 33406 /
NCIMB 9469)
Length = 463
Score = 115 bits (276), Expect = 3e-24
Identities = 63/214 (29%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
Frame = +3
Query: 243 HSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA 422
H F + L ++L AI + G+ P+E+Q + IPQ + G DI+ A++G GKTA + L
Sbjct: 3 HPLNFEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALP 62
Query: 423 TLQQLEPSESH-VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L +++ ++ H ++ TREL QI ++ +KY + +R+ +GG+ + +E L
Sbjct: 63 ILMKIKYAQGHNPRAVIFGPTRELVMQIEIAMKQLAKY-TDLRIVALYGGIGPKLQKEHL 121
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+ I+V TPGR L +LDE DKM++ + ++++ P
Sbjct: 122 QKGV-DIIVATPGRFLDLYLEEEIVLKEVKTMVLDEADKMMD-MGFMPQLRKMLEVIPRK 179
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEA 881
+Q ++FSAT+S+ + + ++F++ PM++ V +A
Sbjct: 180 RQNLLFSATMSERVERLTEEFLEYPMKIEVTPQA 213
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 115 bits (276), Expect = 3e-24
Identities = 64/210 (30%), Positives = 106/210 (50%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L P +L A+ G+E PS +Q + IP + G +L A++G GKTA F L L +
Sbjct: 26 FAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLLSR 85
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ + + +LV+ TRELA Q+++ + ++ V +GG LK
Sbjct: 86 IDANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKRGA- 144
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
++VGTPGR+L +LDE D+ML + DV+ I TP Q +
Sbjct: 145 QVIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLR-MGFIDDVEAILAKTPDTCQRAL 203
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAK 884
FSAT+ +I+ V + ++++ EV + E +
Sbjct: 204 FSATMPPQIKKVAQTYLKNATEVRIESETR 233
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 115 bits (276), Expect = 3e-24
Identities = 60/229 (26%), Positives = 113/229 (49%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L +L + F P+++Q IP A+ MD++ Q+KSG GKT ++V+A +Q
Sbjct: 27 FEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQS 86
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
P+ + + +++ TRELA Q+ + K + S F GG + KD + + +
Sbjct: 87 FNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNES-- 144
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+++GTPGR+L +LDE D++ ++ ++ V ++ P +Q++
Sbjct: 145 RVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIA 204
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
SAT + + K M PM + + A + L G++Q +L + +
Sbjct: 205 CSATYDQNLDERLAKVMDKPMLISNSERATVLL-GIRQFVYELPQQNNS 252
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 114 bits (275), Expect = 4e-24
Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 1/242 (0%)
Frame = +3
Query: 216 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 395
E + S S S GF+ L + L ++ G+ P+ +Q + IP + G DI+ A++G
Sbjct: 2 EEQQSKKSKSSGGFQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGS 61
Query: 396 GKTAVFVLATLQQLEP-SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 572
GKTA +++ + +LE S V L++C TRELA Q K + K ++ ++ S+ GG
Sbjct: 62 GKTAAYLVPIINRLETHSTEGVRSLIICPTRELALQTIKVFNELGK-LTNLKASLIIGGS 120
Query: 573 PIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQ 752
+ + L + P I+V TPGR+ DE D M ES V
Sbjct: 121 KLSDQFDNLSSG-PDIIVATPGRLTFILEGANISLNRVEMVCFDEADLMFES-GFSEQVS 178
Query: 753 EIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKEN 932
+I R P +Q+++FSATL + + K ++ P + + E +L L + +KE+
Sbjct: 179 DIMRMLPPTRQILLFSATLPRNLAEFLKNTLKQPEIIRLDTEERLS-PDLDNFFYHVKEH 237
Query: 933 EK 938
EK
Sbjct: 238 EK 239
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 114 bits (275), Expect = 4e-24
Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 3/233 (1%)
Frame = +3
Query: 189 GSTEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 368
G+T + KE + + S G L P ++ A+ G+E P+ +Q +P + G D
Sbjct: 21 GATSPSTVKETSAADNTFESLG-----LLPPLVEALSALGYEEPTPIQRAALPPLLEGKD 75
Query: 369 ILCQAKSGMGKTAVFVLATLQQLEPSESHVY---VLVMCHTRELAFQISKEYERFSKYMS 539
+L A +G GKTA F L LQ++ P + LV+ TRELA Q+++ R+ + +
Sbjct: 76 LLGIAATGTGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKL- 134
Query: 540 GVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKM 719
G+ V +GG I + VLK +VV TPGR L +LDE D+M
Sbjct: 135 GISVVPLYGGQVISQQLRVLKRGV-DVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEM 193
Query: 720 LESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDE 878
L+ + D++ I +TP +Q +FSATL I + ++ +++P+ V + E
Sbjct: 194 LD-MGFAEDLEAILSSTPEKRQTALFSATLPPRIASIAERHLREPVRVRIARE 245
>UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|Rep:
Helicase - Limnobacter sp. MED105
Length = 539
Score = 114 bits (275), Expect = 4e-24
Identities = 70/213 (32%), Positives = 112/213 (52%), Gaps = 8/213 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF L P+I +AI G+ P+ +Q + IP + G+D++ A++G GKTA F L L +
Sbjct: 22 FADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILNR 81
Query: 435 L--------EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
L P+ V L++ TRELA Q++ ++K+ + +R +V +GG+ I
Sbjct: 82 LMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKF-TPLRSTVVYGGVDINPQI 140
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
+ L+ +V+ TPGR+L +LDE D+ML+ + D+Q I
Sbjct: 141 QTLRRGV-ELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRMLD-MGFLPDLQRIINLL 198
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
P +Q ++FSAT S EI+ + K FM P + V
Sbjct: 199 PKTRQNLLFSATFSPEIQKLAKSFMVSPTLIEV 231
>UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18;
Proteobacteria|Rep: ATP-dependent RNA helicase rhlB -
Pseudomonas putida (strain KT2440)
Length = 398
Score = 114 bits (275), Expect = 4e-24
Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 9/237 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F DF L E++ AI D GF + + +Q + + + G D + +A++G GKTA F+++ + Q
Sbjct: 11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 70
Query: 435 LE----PSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
L+ P E ++ L++ TREL QI+K+ +KY +G+ V F GGM K +
Sbjct: 71 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY-TGLNVMSFVGGMDFDKQLK 129
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
L+ I+V TPGR+L +LDE D+ML+ + V++I R TP
Sbjct: 130 ALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQVRQIIRQTP 188
Query: 774 --HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+Q ++FSAT + ++ + K++ +P V + E + ++QH + ++K
Sbjct: 189 PKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPE-NVASETVEQHVYAVAGSDK 244
>UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=3;
Thermus thermophilus|Rep: Heat resistant RNA dependent
ATPase - Thermus thermophilus
Length = 510
Score = 114 bits (274), Expect = 5e-24
Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 3/208 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+DF LKPEIL A+ G P+ +Q +P A+ G D++ QA++G GKT F L ++
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 435 LEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L PS+ LV+ TRELA Q++ E + ++ V V +GG K +E L
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAV---YGGTGYGKQKEALLR 119
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
VV TPGR L +LDE D+ML S+ +V+ + TP +Q
Sbjct: 120 GA-DAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML-SMGFEEEVEALLSATPPSRQ 177
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYV 869
++FSATL + + +++M++P+ + V
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINV 205
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 114 bits (274), Expect = 5e-24
Identities = 63/222 (28%), Positives = 114/222 (51%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F D+ L E+L++I FE P++VQ + IP + DI+ ++++G GKTA F +
Sbjct: 4 SNFSDYQLSDELLKSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPIC 63
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
Q ++ E+ LV+ TRELA Q+ ++ ++ ++V+ +G P E+ LK
Sbjct: 64 QLVDWDENKPQALVLVPTRELAIQVKEDMFNIGRF-KRLKVAAVYGKAPFYHQEKELKQK 122
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
H+VVGTPGRI+ ++DE D+M ++ ++ I ++ +
Sbjct: 123 -THVVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMF-NMGFVDQIETIIKDLSKKRVT 180
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHY 914
M+ SAT+ I + ++M+DP+ + +E+ Q+ Y
Sbjct: 181 MLLSATMPSAIETLSNRYMKDPIHAEIEEESSAVDRISQERY 222
>UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10;
Rickettsia|Rep: ATP-dependent RNA helicase RhlE -
Rickettsia conorii
Length = 414
Score = 113 bits (273), Expect = 6e-24
Identities = 69/227 (30%), Positives = 119/227 (52%)
Frame = +3
Query: 258 RDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL 437
++F L E++ A+ P+E+Q + IP A+ G DIL +++G GKT ++L +
Sbjct: 6 KNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSF 65
Query: 438 EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPH 617
+++ +LV TRELA QI + + + +V GG P+ K LK P
Sbjct: 66 IKNKTTALILV--PTRELATQIHSTLNKVTTSYK-INSAVLIGGEPMPKQFIQLKKN-PK 121
Query: 618 IVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMF 797
+++GTPGRI+ +LDE D+ML+ + M+ ++EI + P +QV+MF
Sbjct: 122 VIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLD-MGMKEQLEEINKFLPEKRQVLMF 180
Query: 798 SATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
SAT+ K I V +K++ +P+ + V K ++Q + + + EK
Sbjct: 181 SATMPKHIIAVSQKYLNNPVRITVGATNKAAAE-IKQESMHVSDKEK 226
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 113 bits (273), Expect = 6e-24
Identities = 65/234 (27%), Positives = 115/234 (49%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F F L+ ++ A+ D FE P+E+Q+ IP+ + +++ Q+++G GK+ F+L +Q
Sbjct: 6 FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ +V+ TRELA Q+ S++ +GV V VF GG I+KD + A P
Sbjct: 66 IDSEIKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRC-NAQP 124
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+++GTP RI ++DE D M++ L + DV I + +
Sbjct: 125 QLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMID-LGLIEDVDYIAARLEDNANIAV 183
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNRNSSN 956
FSAT+ ++++P K++ P E D K ++ + + K K + N
Sbjct: 184 FSATIPQQLQPFLNKYLSHP-EYVAVDSKKQNKKNIEFYLIPTKGAAKVEKTLN 236
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 113 bits (272), Expect = 8e-24
Identities = 69/209 (33%), Positives = 105/209 (50%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L EIL A+ D GF P+ +Q IP + D++ A++G GKTA F L L
Sbjct: 47 FASLGLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAI 106
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ E +V LV+ TRELA Q ++ E F+ + + V +GG P LK
Sbjct: 107 VDADERNVQALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRGA- 165
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+VVGTPGR++ +LDE D+ML + DV+ I + P + +
Sbjct: 166 QVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLR-MGFAEDVETIASSAPDDRLTAL 224
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEA 881
FSAT+ I V ++ ++DP++V V E+
Sbjct: 225 FSATMPAAIEKVAREHLKDPVKVAVSTES 253
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 113 bits (272), Expect = 8e-24
Identities = 69/229 (30%), Positives = 123/229 (53%)
Frame = +3
Query: 252 GFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ 431
G+ L P +L+ I D G++ PS VQ IP + G ++L ++K+G GKTA +++ L
Sbjct: 109 GWESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLN 168
Query: 432 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
+ SE + +++ RELA QIS+ +R S+ +GV + GG +Q D+ + +
Sbjct: 169 MINSSELSIQGIILVPIRELALQISRNVKRMSE-GTGVISAPVVGGTSMQ-DDIIRVSNG 226
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
H++VGTPGRI+ + DE DK+L+ + V ++ P KQ++
Sbjct: 227 VHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLD-VTFGETVTKLLDLLPREKQML 285
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
++SAT + +++M++P+ + + E L G++Q Y +K +EK
Sbjct: 286 LYSATFPYFVTGFIRRYMKNPLCINLMKE--LAPVGVKQFYTYVKPSEK 332
>UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box
ATP-dependent RNA helicase; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DEAD box
ATP-dependent RNA helicase - Nasonia vitripennis
Length = 836
Score = 113 bits (271), Expect = 1e-23
Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 5/237 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L +L+A+ F +P+ +Q IP A++G DI A +G GKTA ++L TL++
Sbjct: 156 FYNMNLSRPLLKAVTSMNFVNPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLER 215
Query: 435 L--EPSESHVY-VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L P + V VLV+ TREL Q+ + ++ S++ S V V + GG+ ++ E VL+
Sbjct: 216 LLYRPLDGAVTRVLVLVPTRELGVQVYQVTKQLSQFTS-VEVGLSVGGLDVKVQESVLRK 274
Query: 606 ACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
P IV+ TPGR++ ILDE D+ML+ ++ I R +
Sbjct: 275 N-PDIVIATPGRLIDHLANTPTFSLDTIEVLILDEADRMLDEY-FAEQMKHIVRQCARTR 332
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKL-KENEKNRNS 950
Q ++FSAT+++E++ + + P++V+V + + L+Q ++++ KE E +R +
Sbjct: 333 QTILFSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFN-LRQEFIRIRKEREGDREA 388
>UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_03001730;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001730 - Ferroplasma acidarmanus fer1
Length = 430
Score = 113 bits (271), Expect = 1e-23
Identities = 62/183 (33%), Positives = 101/183 (55%), Gaps = 1/183 (0%)
Frame = +3
Query: 309 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE-SHVYVLVMCHTR 485
F P+E+Q + IP + G D++ ++K+G GKTA ++L L +E + V +++ TR
Sbjct: 16 FTEPTEIQEKAIPVVLTGKDVIIRSKTGSGKTAAYLLPVLNSVEKLKGKSVKAIIILPTR 75
Query: 486 ELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXX 665
ELA Q + R K +SG++ ++ +GG I + E L + IV+GTPGRIL
Sbjct: 76 ELALQTHRVASRLGK-ISGIKSTIVYGGASIIRQVEELPGS--DIVIGTPGRILDLYNQK 132
Query: 666 XXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFM 845
+LDE D ML+ + D+++I TP G+Q ++ SATL E++ + FM
Sbjct: 133 YLKLDHVKYLVLDEADLMLD-MGFIDDIKKIISFTPEGRQTILLSATLPAEVKTIANHFM 191
Query: 846 QDP 854
+P
Sbjct: 192 NNP 194
>UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=11; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 678
Score = 113 bits (271), Expect = 1e-23
Identities = 67/208 (32%), Positives = 110/208 (52%), Gaps = 5/208 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L P L+A+ D G+ + +Q IP A+ G D+L A++G GKTA F L + +
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 435 LEPSESHVYV---LVMCHTRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVL 599
L + + LV+ TRELA Q++ +E KY G ++S + GG+ E+ L
Sbjct: 64 LMNGRAKARMPRALVIAPTRELADQVASSFE---KYAKGTKLSWALLIGGVSFGDQEKKL 120
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+++ TPGR+L ++DE D+ML+ + D++ IF+ TP
Sbjct: 121 DRGV-DVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLD-MGFIPDIERIFKMTPPK 178
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEV 863
KQ + FSAT+ EI + K+F++DP+ +
Sbjct: 179 KQTLFFSATMPPEITRLTKQFLKDPVRI 206
>UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Rep:
DEAD-box helicase 2 - Plasmodium falciparum
Length = 562
Score = 113 bits (271), Expect = 1e-23
Identities = 64/209 (30%), Positives = 112/209 (53%), Gaps = 1/209 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D + EIL +I + G++ P+E+Q E +P A L DI+ +++G GKTA F++ LQ
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L+ ++ Y LV+ TREL QIS+ ++ + + + +GG+ I L P
Sbjct: 218 LKVNKQSFYALVISPTRELCIQISQNFQALGMNLL-INICTIYGGVDIVTQSLNLAKK-P 275
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
+++V TPGRIL + + DE DK+L S D + ++ P +
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLL-SQDFESSINKLLLILPPNRITF 334
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDE 878
+FSAT++K + + K +++P++V V ++
Sbjct: 335 LFSATMTKNVAKLKKACLKNPVKVEVSNK 363
>UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DRS1 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 808
Score = 113 bits (271), Expect = 1e-23
Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 7/252 (2%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F L +LRA+ F P+ +Q IP A+LG DIL A +G GKTA F++ L
Sbjct: 222 SSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPIL 281
Query: 429 QQL-----EPSESHVYVLVMCHTRELAFQISKEYERFS-KYMSGVRVSVFFGGMPIQKDE 590
++L + VLV+C TRELA Q + + K VR ++ GG+ +
Sbjct: 282 ERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQA 341
Query: 591 EVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRN 767
L+T P I++ TPGR++ ++DE D+MLE+ +++EI +
Sbjct: 342 HTLRT-LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEA-GFTDELEEIIKA 399
Query: 768 TPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNRN 947
P +Q M+FSAT++ + + K + P+ V+V D + GL Q +V+++ ++ +R+
Sbjct: 400 CPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFV-DPKRNTARGLTQEFVRIRSDD-SRS 457
Query: 948 SSNYXMXXSSIR 983
S + +IR
Sbjct: 458 PSLLALCKRTIR 469
>UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase dbp10 - Schizosaccharomyces pombe (Fission
yeast)
Length = 848
Score = 113 bits (271), Expect = 1e-23
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 2/244 (0%)
Frame = +3
Query: 213 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 392
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 393 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 566
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 567 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRD 746
G+ +++ +L + P IVV TPGR L + DE D++ E +
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFE-MGFAAQ 233
Query: 747 VQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
+ EI P +Q ++FSATL + + K +QDP+ V + E+K+ LQ + +K
Sbjct: 234 LTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSA-DLQSAFFSVK 292
Query: 927 ENEK 938
E+
Sbjct: 293 TAER 296
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 112 bits (270), Expect = 1e-23
Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 2/212 (0%)
Frame = +3
Query: 240 IHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL 419
I S F D ++ +++ + + P+ VQ + IP + G D+L A++G GKTA F L
Sbjct: 4 IMSVNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGL 63
Query: 420 ATLQQLEPSESH--VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
+Q ++ + + + L++ TRELA Q+ +++++ + +R+ +GG I +
Sbjct: 64 PIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEH-TDLRIVCVYGGTSIGVQKN 122
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
L+ I++ TPGR+L +LDE D+ML+ + D+Q I R P
Sbjct: 123 KLEEGAD-ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLD-MGFWPDLQRILRRLP 180
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
+ KQ+M+FSAT K I+ + K M P+EV V
Sbjct: 181 NDKQIMLFSATFEKRIKTIAYKLMDSPVEVEV 212
>UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13;
Proteobacteria|Rep: DEAD/DEAH box helicase-like -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 422
Score = 112 bits (270), Expect = 1e-23
Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 5/213 (2%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S GF LL P LRAI D G+ P+ +Q + IP +LG D++ A++G GKTA F L
Sbjct: 5 SLGFSPALL-PAFLRAIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFALPM 63
Query: 426 LQQLEPSES----HVYVLVMCHTRELAFQISKEYERFSKYM-SGVRVSVFFGGMPIQKDE 590
LQQL + + L++ TRELA Q+ + F+KY+ V+V+V FGG+ I
Sbjct: 64 LQQLANAPTGTPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSINPQM 123
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
L+ IVV TPGR+L +LDE D++L+ L ++ I
Sbjct: 124 MNLRGGA-DIVVATPGRLLDLLEHNALKISEVSTLVLDEADRLLD-LGFGEELGRILELL 181
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
P +Q + FSAT I + + + DP+ + V
Sbjct: 182 PPRRQNLFFSATFPPAIEVLAESMLHDPLRIEV 214
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 112 bits (270), Expect = 1e-23
Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 1/210 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F F P+I I D G+ P+ +Q + IP A+ G D++ A++G GKTA FVL LQ+
Sbjct: 3 FDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQR 62
Query: 435 L-EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
L V +++ TRELA QI E KY +G+R +GG+ Q + L+
Sbjct: 63 LMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKY-TGLRSVTLYGGVGYQGQIQRLRRGV 121
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
I V PGR+L ILDE D+M + + DV+ I R P +Q M
Sbjct: 122 -EIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFD-MGFLPDVRRILRLAPAQRQTM 179
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEA 881
+FSAT+ IR + ++ +++P + + A
Sbjct: 180 LFSATMPDAIRALAREALREPQTIQIGRSA 209
>UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=1;
Leptospirillum sp. Group II UBA|Rep: Superfamily II DNA
and RNA helicase - Leptospirillum sp. Group II UBA
Length = 444
Score = 112 bits (270), Expect = 1e-23
Identities = 74/226 (32%), Positives = 111/226 (49%), Gaps = 3/226 (1%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
L PEILRA+ D G P+ +Q + IP + G D+L A++G GKT F+L L ++
Sbjct: 8 LSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLHKIAEGR 67
Query: 450 SHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 620
H LV+ TRELA QI + + ++KY+ + GG+ + E LK I
Sbjct: 68 RHGIRNRALVLSPTRELATQIHQAAKDYAKYLH-TNAVLLVGGVDFIRQERNLKRNW-DI 125
Query: 621 VVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFS 800
VV TPGR+L I+DE D+ML+ + D+ I R P G+Q ++FS
Sbjct: 126 VVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLD-MGFLPDINTIVRQLPKGRQSLLFS 184
Query: 801 ATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
AT I+ + F D + V V E K H + Q ++ + +
Sbjct: 185 ATCPPRIQELAATFQNDAVIVRVEPERKGSDH-IHQEWITVSHGSQ 229
>UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=2;
Polaribacter|Rep: Putative ATP-dependent RNA helicase -
Polaribacter dokdonensis MED152
Length = 411
Score = 112 bits (270), Expect = 1e-23
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 7/231 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL-- 428
F D L I +AI + F P+ VQ + IP + +++ A++G GKTA F L +
Sbjct: 3 FSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPIINL 62
Query: 429 ----QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
Q E E + LV+ TRELA QI + ++ +SKY S +R + FGG+ ++ +E+
Sbjct: 63 LFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKY-SNLRSTAVFGGVSLEPQKEI 121
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
L I+V TPGR++ F+LDE D ML+ + D+++I + P
Sbjct: 122 LAKGV-DILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLD-MGFINDIKKIEKLCPR 179
Query: 777 GKQVMMFSATLSKEIRPVCKKFMQDPMEVYV-XDEAKLKLHGLQQHYVKLK 926
KQ ++FSAT+ ++I + K +++ +V + +E K G +Y+ K
Sbjct: 180 KKQTLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPKK 230
>UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helicase
protein; n=1; Methylophilales bacterium HTCC2181|Rep:
putative ATP-dependent RNA helicase protein -
Methylophilales bacterium HTCC2181
Length = 427
Score = 112 bits (269), Expect = 2e-23
Identities = 65/208 (31%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+ F L IL+AI + G++ P+ +Q + IP+ +L +L A++G GKTA FVL L +
Sbjct: 3 FQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILDK 62
Query: 435 LEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L + S VL++ TRELA QI+ +++S+Y+ + GG+ +
Sbjct: 63 LTKNRSEGRGPRVLIVSPTRELATQITDSIKKYSRYLR-INSITITGGISYGLQNRMFSK 121
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
I+V TPGR+L ILDE D+ML+ + D+++I+ T +Q
Sbjct: 122 PI-DILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLD-MGFVPDIRKIYNATSKKQQ 179
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYV 869
++MFSAT I+ + ++F+ +P+ + +
Sbjct: 180 MLMFSATFDPPIQKIAQEFLTNPVTISI 207
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 112 bits (269), Expect = 2e-23
Identities = 64/171 (37%), Positives = 92/171 (53%)
Frame = +3
Query: 342 IPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYER 521
IP A+ G D L QAK+G GKTA F L L L+ E L++ TRELA QI +
Sbjct: 3 IPVALQGRDCLIQAKTGTGKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRD 59
Query: 522 FSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFIL 701
F++Y++ VR F+GG + D +VL+ +V+GTPGRI F+L
Sbjct: 60 FARYLN-VRTFAFYGGTKVFGDLKVLRGGKVDVVIGTPGRIKDLIERGALKTDDVRYFVL 118
Query: 702 DECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDP 854
DE D ML+ ++ + D+ I+ P KQV SAT KE+R + ++ + P
Sbjct: 119 DEVDVMLD-MNFKEDIDFIYSQLPEEKQVFFVSATFPKEVRELSHRYTKKP 168
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 112 bits (269), Expect = 2e-23
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQ 431
F++ L EIL A+ GF P+ +Q + IP + G DI+ QA++G GKTA F + L+
Sbjct: 4 FKNLGLSDEILEALEKKGFTTPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
Query: 432 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
++ S + L++ TRELA Q+++E + K + V +GG I + L+
Sbjct: 64 TIDESSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
IVVGTPGRIL +LDE D+ML ++ DV+EI ++ K+++
Sbjct: 123 -QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEML-NMGFIDDVEEILKSVSTEKRML 180
Query: 792 MFSATLSKEIRPVCKKFMQD 851
+FSATL I + K +M++
Sbjct: 181 LFSATLPDSIMKLAKNYMRE 200
>UniRef50_P44701 Cluster: ATP-dependent RNA helicase srmB homolog;
n=39; Gammaproteobacteria|Rep: ATP-dependent RNA
helicase srmB homolog - Haemophilus influenzae
Length = 439
Score = 112 bits (269), Expect = 2e-23
Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 5/234 (2%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F F L PE+L+A+ G+ P+ +Q E IP A+ D+L A +G GKTA F+L L
Sbjct: 4 SQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPAL 63
Query: 429 QQL----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
Q L +LV+ TRELA Q++++ E +++ + + ++ GG+ Q +V
Sbjct: 64 QHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQF-THLNIATITGGVAYQNHGDV 122
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
T +VV TPGR+L I DE D+ML+ + +D ++I T
Sbjct: 123 FNTN-QDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQ-MGFGQDAEKIAAETRW 180
Query: 777 GKQVMMFSATLSKEIR-PVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENE 935
KQ ++FSATL E+ ++ + DP++V + ++ + + Q Y NE
Sbjct: 181 RKQTLLFSATLEGELLVDFAERLLNDPVKVDA-EPSRRERKKINQWYYHADSNE 233
>UniRef50_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA helicase 48;
n=6; Oryza sativa|Rep: DEAD-box ATP-dependent RNA
helicase 48 - Oryza sativa subsp. japonica (Rice)
Length = 811
Score = 111 bits (268), Expect = 2e-23
Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 11/203 (5%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + + P ++A+ D G+ + VQ +P + G D+L +AK+G GK+A F+L ++
Sbjct: 344 FEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIES 403
Query: 435 -LEPSESH-------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
L +SH ++ L++C TRELA Q++ E KY G+ V GG + D+
Sbjct: 404 VLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQ 463
Query: 591 EVLKTACPHIVVGTPGRIL---AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIF 761
L++ I+V TPGR+L +LDE D +L+ L R D+++I
Sbjct: 464 RRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLD-LGFRTDIEKIV 522
Query: 762 RNTPHGKQVMMFSATLSKEIRPV 830
+ P +Q ++FSAT+ KE+R V
Sbjct: 523 DSLPRQRQTLLFSATIPKEVRRV 545
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 111 bits (267), Expect = 3e-23
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 3/212 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D + IL A+ G+ HP+ +Q E IP A+ G D+L A++G GKTA FV+ L +
Sbjct: 46 FTDLNIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVLDR 105
Query: 435 LEPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L + S L++ TRELA Q+ +SK M G+ GG P LK
Sbjct: 106 LSRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKK 165
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
++V TPGR+L +LDE D+ML+ + D+ +I R P +Q
Sbjct: 166 GV-QVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLD-MGFADDISDILRAAPIDRQ 223
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEA 881
+M SAT + + F ++P V + E+
Sbjct: 224 TIMCSATWDGPVGKIAASFTKNPERVSIKVES 255
>UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;
Sulfurovum sp. NBC37-1|Rep: ATP-independent RNA helicase
DbpA - Sulfurovum sp. (strain NBC37-1)
Length = 453
Score = 111 bits (267), Expect = 3e-23
Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 1/199 (0%)
Frame = +3
Query: 276 PEILRAIVDC-GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSES 452
PE L ++ GF +E+Q + I + G DIL Q+K+G GKT F + + + +
Sbjct: 11 PEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIPAVMGTDVKSN 70
Query: 453 HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGT 632
+V+ TRELA Q++ E + + Y + +++ +GG+P++ + L HI++GT
Sbjct: 71 KPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLAKGA-HILIGT 129
Query: 633 PGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLS 812
PGRI +LDE D+ML+ + ++ +I N P KQ ++FSAT
Sbjct: 130 PGRIQDHLAKGTLTLESIKTLVLDEADRMLD-MGFYEEIIKIGSNMPKQKQTLLFSATFP 188
Query: 813 KEIRPVCKKFMQDPMEVYV 869
+I + K ++DP+ + V
Sbjct: 189 PKIESLAKALLKDPLTIKV 207
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 111 bits (266), Expect = 4e-23
Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 1/206 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L P +L+A+ + GF P+ +Q + IP A+ G D++ A +G GKTA F+L L Q
Sbjct: 3 FSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPILHQ 62
Query: 435 L-EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
L + LV+ TRELA QI ++ + + + + + FGG+ I+ E +
Sbjct: 63 LIDRPRGTTRALVITPTRELAAQILEDLNDLAVH-TPISAAAVFGGVSIRPQEHAFRRGV 121
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
+++GTPGR+L +LDE D+ML+ + D++ I ++ P +Q +
Sbjct: 122 D-VLIGTPGRLLDHFRAPYAKLAGLEHLVLDEADRMLD-MGFLPDIRRILKHIPARRQTL 179
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYV 869
FSAT+ I + ++ +++P V +
Sbjct: 180 FFSATMPAPIGVLAREMLRNPATVNI 205
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 111 bits (266), Expect = 4e-23
Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 2/226 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L +I+ ++ G+E+P+ +Q IP + G D+L QA++G GKTA F L +
Sbjct: 9 FSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINN 68
Query: 435 LE--PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
++ + VLV+ TRELA Q+++++E F+K + + V+ +GG LK
Sbjct: 69 MDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQG 128
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
+VVGT GR++ +LDE D+ML + DV+ + + Q
Sbjct: 129 V-KVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLR-MGFIDDVKFVLSHVSDECQR 186
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
++FSAT+ +I + ++++++P ++ V + K + + Q ++ +K
Sbjct: 187 LLFSATIPTDIADIIEEYLRNPCKIQVKAKTK-TANTVTQKFIVIK 231
>UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG5800-PA - Tribolium castaneum
Length = 770
Score = 110 bits (265), Expect = 6e-23
Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 6/236 (2%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
+ F D L P+ L+ + +CG+ P+++Q E I + G DIL A++G GKT F++ L
Sbjct: 51 NSFDDLPLSPKTLKGLKECGYTKPTDIQRETIKLGLTGKDILGAAQTGSGKTLAFLIPIL 110
Query: 429 QQLEPSE----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
++L + + LV+ TRELA+QI +E R ++ + GG + K E
Sbjct: 111 ERLYCKQWTRLDGLGALVITPTRELAYQIFEELRRVGEHHE-FSAGLIIGGKDL-KFERN 168
Query: 597 LKTACPHIVVGTPGRILA-XXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
C +IV+GTPGRIL +LDE D+ L+ + + + I N P
Sbjct: 169 RMDQC-NIVIGTPGRILQHMDENPLFDCVNMEILVLDEADRCLD-MGFEQTMNAIVANLP 226
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKL-HGLQQHYVKLKENEK 938
+Q ++FSAT +K +R + + +++P V V + ++ GLQQ YV + +K
Sbjct: 227 AKRQTLLFSATQTKSVRDLARLSLKNPAYVSVHEHSEYSTPKGLQQSYVVCELKDK 282
>UniRef50_Q8EPZ1 Cluster: ATP-dependent RNA helicase; n=2;
Bacillaceae|Rep: ATP-dependent RNA helicase -
Oceanobacillus iheyensis
Length = 432
Score = 110 bits (265), Expect = 6e-23
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 3/210 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L P + I F++P+E+Q + IP + G ++ Q+++G GKT F+L
Sbjct: 3 FEDLQLNPIVNDVIEQLKFKNPTEIQEKVIPAIIKGDSVVGQSRTGSGKTHAFLLPLFHG 62
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVR---VSVFFGGMPIQKDEEVLKT 605
LE + V ++ TRELA Q+ E + + GG QK E LKT
Sbjct: 63 LESDKKEVQFVITAPTRELATQLYGEVRNIITLADKTKEWNAKLLVGGTDKQKMTEKLKT 122
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
PHI+VGTPGRIL F++DE D ML+ L +V ++ + Q
Sbjct: 123 P-PHIIVGTPGRILDLVKSGALSIYTAKSFVVDEADLMLD-LGFIEEVDQLLVRSKQDIQ 180
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXD 875
+++FSAT+ + ++ KK++++P+ V + +
Sbjct: 181 LLVFSATIPQRLQHFFKKYIKNPLNVKINE 210
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 110 bits (265), Expect = 6e-23
Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 8/213 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F F L EIL+AI + G+ P+ +Q + IP + G D++ A++G GKTA F L +Q+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 435 L--------EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
L P+ V L++ TRELA Q++ ++K+ + +R +V FGG+ +
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGGVDMNPQM 131
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
L+ I++ TPGR+L +LDE D+ML+ + D+Q I
Sbjct: 132 AELRRGV-EILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLD-MGFLPDLQRILNLL 189
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
P +Q ++FSAT S EI+ + ++++P + V
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRNPQTIEV 222
>UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 432
Score = 110 bits (265), Expect = 6e-23
Identities = 66/213 (30%), Positives = 111/213 (52%), Gaps = 5/213 (2%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
+ F D L P +LRA+ + G+ P+ +Q + IP + G D+L A++G GKTA F L
Sbjct: 6 AQAFADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPL 65
Query: 426 LQQLEPS-----ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
L +L + ++ VLV+ TREL QI+ +E FS++ VRV+ FGG+
Sbjct: 66 LHRLAATPRPAPKNGARVLVLAPTRELVSQIADGFESFSRHQP-VRVTTIFGGVSQVHQV 124
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
+ L+ I+V PGR+L +LDE D+ML+ + + ++ I
Sbjct: 125 KALEEGV-DIIVAAPGRLLDLIEQGLCDLSQLETLVLDEADQMLD-MGFAKPIERIVATL 182
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
P + ++FSAT+ K I + + +++P +V +
Sbjct: 183 PEDRHTVLFSATMPKSIAALVESLLRNPAKVEI 215
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 110 bits (265), Expect = 6e-23
Identities = 61/211 (28%), Positives = 111/211 (52%)
Frame = +3
Query: 306 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTR 485
GF+ P+ VQ + + G D++ ++ +G GKT + L L++++P + H +++ +R
Sbjct: 23 GFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSR 82
Query: 486 ELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXX 665
EL QI + + + K S +R + GG ++K E LK PHI+VGTPGR+
Sbjct: 83 ELVMQIFQVIQDW-KAGSELRAASLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAK 140
Query: 666 XXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFM 845
+LDE D+++ + R +++I + T +Q++ FSATL KE V ++
Sbjct: 141 KLKMHEVKTIVLDETDQLVLP-EHRETMKQIIKTTLRDRQLLCFSATLKKETEDVLRELA 199
Query: 846 QDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
Q+P EV +K + ++ Y+ + +K
Sbjct: 200 QEP-EVLKVQRSKAEAGKVKHQYLICDQRDK 229
>UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein;
n=7; Actinomycetales|Rep: DEAD/DEAH box helicase domain
protein - Arthrobacter sp. (strain FB24)
Length = 585
Score = 110 bits (265), Expect = 6e-23
Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 10/222 (4%)
Frame = +3
Query: 240 IHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL 419
I F D+ ++ +I+ ++ D G HP +Q +P A+ G DI+ QAK+G GKT F +
Sbjct: 34 IEEKSFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGI 93
Query: 420 ATLQQL----EPSESHVYV------LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGG 569
LQ++ +P + V LV+ TRELA Q++K+ E ++ R++ +GG
Sbjct: 94 PALQRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAAR-KRNARIATIYGG 152
Query: 570 MPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDV 749
+ + L+ IVVGTPGR++ ILDE D+ML+ L DV
Sbjct: 153 RAYEPQVDSLQKGV-EIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLD-LGFLPDV 210
Query: 750 QEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXD 875
+ + TP +Q ++FSAT+ + + +++M P + D
Sbjct: 211 ETLIAGTPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAAD 252
>UniRef50_Q7JQN4 Cluster: LD15481p; n=7; Endopterygota|Rep: LD15481p
- Drosophila melanogaster (Fruit fly)
Length = 782
Score = 110 bits (265), Expect = 6e-23
Identities = 69/235 (29%), Positives = 132/235 (56%), Gaps = 5/235 (2%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
+ F L ++RAI G+ +P+ +Q IP A+LG DI A +G GKTA ++L TL
Sbjct: 157 TSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTL 216
Query: 429 QQL--EP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
++L P +++ VLV+ TREL Q+ + ++ ++ + + V + GG+ ++ E V
Sbjct: 217 ERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTT-IDVGLAIGGLDVKAQEAV 275
Query: 597 LKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
L+ P IV+ TPGR++ ILDE D+ML+ ++EI +
Sbjct: 276 LRQN-PDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEY-FAEQMKEIINSCC 333
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+Q M+FSAT+S++++ + + P++V+V + ++ + L+Q +++++E+++
Sbjct: 334 KTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFN-LRQEFIRIREDKE 387
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 110 bits (265), Expect = 6e-23
Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 3/227 (1%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S F L E+ ++ G++ P+ +Q E +P A+ G DI+ A++G GKTA F L
Sbjct: 50 SPTFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPI 109
Query: 426 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
LQ+L Y L++ TREL QIS++ + GV V GG+ + +
Sbjct: 110 LQRLLQRTQRFYALILAPTRELCLQISQQILAMGGTL-GVTVVTLVGGLD-HNTQAIALA 167
Query: 606 ACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRN--TPH 776
PH+VVG+PGR++ +LDE D++L SLD +Q + + +P
Sbjct: 168 KKPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLL-SLDFDAALQVLLEHVGSPA 226
Query: 777 GKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
+Q M+FSAT++ ++ + K ++ P+++ V + + H LQQH++
Sbjct: 227 ERQTMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASH-LQQHFL 272
>UniRef50_A3H9E9 Cluster: DEAD/DEAH box helicase-like; n=1;
Caldivirga maquilingensis IC-167|Rep: DEAD/DEAH box
helicase-like - Caldivirga maquilingensis IC-167
Length = 359
Score = 110 bits (265), Expect = 6e-23
Identities = 68/201 (33%), Positives = 109/201 (54%)
Frame = +3
Query: 267 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS 446
LLK E+ RAI + GF P+EVQ IP+ + G ++ QA++G GKTA ++L T+ ++
Sbjct: 5 LLKEELRRAISEYGFNEPTEVQRSVIPKILDGFNVAMQARTGSGKTAAYLLPTMSMMKGD 64
Query: 447 ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVV 626
LV+ TRELA QI ++ F+KY + +V +GG+ + L+ A ++V
Sbjct: 65 LGE--ALVISPTRELALQIMNQFLIFNKY-TKFNSAVVYGGVGYSGQVKALRDA--SLIV 119
Query: 627 GTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSAT 806
TPGR+L I+DE D+ML+ + +DV I T + KQ +AT
Sbjct: 120 ATPGRLLDLTGKSIVDLSNVKYLIIDEVDRMLD-MGFIKDVYTISSLTGNRKQTHAATAT 178
Query: 807 LSKEIRPVCKKFMQDPMEVYV 869
L E+ V K+ +++P+ + V
Sbjct: 179 LPSEVHDVVKRVLRNPLFIRV 199
>UniRef50_Q6C7X8 Cluster: ATP-dependent RNA helicase DBP10; n=3;
Saccharomycetales|Rep: ATP-dependent RNA helicase DBP10
- Yarrowia lipolytica (Candida lipolytica)
Length = 926
Score = 110 bits (265), Expect = 6e-23
Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 2/234 (0%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S F L +L+ I GF+ P+ +Q + IP + G D++ A++G GKTA FVL
Sbjct: 101 SGSFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPM 160
Query: 426 LQQLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L++L+ + V +++ +RELA Q K + FS + +R+++ GG +++ +++
Sbjct: 161 LEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSA-GTDLRLAMLVGGDSLEEQFKMM 219
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+ P I++ TPGR L DE D++ E L + E+ + P
Sbjct: 220 MSN-PDIIIATPGRFLHLKVEMELSLASVEYICFDEADRLFE-LGFGEQMNELLASLPSN 277
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
+Q ++FSATL K + K + DP+ V + E KL H L+ + +KEN+++
Sbjct: 278 RQTLLFSATLPKTLVEFAKAGLHDPILVRLDAETKLPEH-LEMTFFAVKENQRD 330
>UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 432
Score = 110 bits (264), Expect = 8e-23
Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 6/226 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D L PE+L+ + G++ P+ +Q IP A+ DI+ A++G GKTA F+L +Q
Sbjct: 11 FKDLGLIPEVLKVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMVQH 70
Query: 435 L---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L + Y +++ TRELA Q+ + + K + G+ + GGM + K + V
Sbjct: 71 LLNVKEKNRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMK-QSVQLA 129
Query: 606 ACPHIVVGTPGRI---LAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
P ++VGTPGRI + ++DE DK+LE +D ++ + P
Sbjct: 130 KRPQVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLE-MDFANEIDYLIEKLPK 188
Query: 777 GKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHY 914
+ M+FSAT+S ++ + + + P+++ ++ + L+Q Y
Sbjct: 189 QRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEY 234
>UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1;
Ustilago maydis|Rep: ATP-dependent RNA helicase DRS1 -
Ustilago maydis (Smut fungus)
Length = 932
Score = 110 bits (264), Expect = 8e-23
Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 9/235 (3%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F F L +LRA+ F P+ +Q IP A+ G DI+ A +G GKTA F++ T+
Sbjct: 333 SSFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTI 392
Query: 429 QQL-------EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 587
++L P E+ VL++ TRELA Q + +K+ + +R + GG+ ++
Sbjct: 393 ERLTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKF-TDIRFCLCVGGLSVKSQ 451
Query: 588 EEVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFR 764
E LK P +V+ TPGR++ ++DE D+MLE ++ EI +
Sbjct: 452 EAELKLR-PEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLED-GFADELNEIVK 509
Query: 765 NTPHG-KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
+ P G +Q M+FSAT++ ++ + + ++ P+ ++V D + L Q +V+++
Sbjct: 510 SCPKGARQTMLFSATMTDDVEQLVRLSLKRPVRLFV-DPKRTTAKKLIQEFVRVR 563
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 109 bits (263), Expect = 1e-22
Identities = 66/205 (32%), Positives = 102/205 (49%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
+GF F L P IL+A+ F+ PS +Q E IP D++ +++G GKTA +
Sbjct: 15 NGFITFNLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIPIC 74
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
++ + + L++ TRELA Q + E ++ KY GV+ FGG + LK
Sbjct: 75 NRVNTELTDIQALIIVPTRELALQYATETQKIGKY-KGVKAFAIFGGEDSALQQSKLKHG 133
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
++V TPGR++ ILDE D+ML S+ D+ I + H Q
Sbjct: 134 V-QVLVATPGRLIDFIYSRQIDLSHVETLILDEADEML-SMGFYDDLVFIIQCLNHSHQT 191
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEV 863
++FSAT+ I+ + K M+DP EV
Sbjct: 192 LLFSATMPAAIQRLAKHHMKDPQEV 216
>UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: DEAD/DEAH
box helicase-like - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 432
Score = 109 bits (263), Expect = 1e-22
Identities = 65/200 (32%), Positives = 110/200 (55%), Gaps = 4/200 (2%)
Frame = +3
Query: 267 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--- 437
++KP +L AI D G+E P+ +Q IP + D+ A++G GKTA F L LQ+L
Sbjct: 8 VIKP-LLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQRLRKT 66
Query: 438 -EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+ + + LV+ TREL+ QI ++ + ++K M G+ ++V GG ++ +++LK
Sbjct: 67 SDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNM-GINIAVLVGGKDLESQQKILKEGV- 124
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
IV+ TPGR+L F+LDE D+ML+ + ++++ I P Q ++
Sbjct: 125 DIVIATPGRVL-EHVDKGLSLSHVEIFVLDEADRMLD-MGFMKEIRRIHPILPKRHQTLL 182
Query: 795 FSATLSKEIRPVCKKFMQDP 854
FSAT S ++R + K + P
Sbjct: 183 FSATFSDKVRKLSKLILTKP 202
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 109 bits (263), Expect = 1e-22
Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
FR + IL+AI + G++ P+ +Q E IP + G D+L A++G GKTA F + LQ
Sbjct: 84 FRSLAIIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVLQL 143
Query: 435 LEPSESH-----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L +++ + L++ TRELA QI + ++ + ++ +G+ +V FGG+ L
Sbjct: 144 LNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGRH-TGLTSTVIFGGVNQNPQTASL 202
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+ I++ TPGR+L F+LDE D+ML+ + D+++I P
Sbjct: 203 QKGI-DILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLD-MGFIHDIRKILAELPKK 260
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
KQ + FSAT+ EI + + +P+EV V
Sbjct: 261 KQSLFFSATMPPEITRLAASILHNPVEVSV 290
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 109 bits (262), Expect = 1e-22
Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%)
Frame = +3
Query: 276 PEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-----E 440
PE+++A+ +CG+E + +Q + IP A G DI A++G GKTA F L +QQL
Sbjct: 10 PEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLIQQLLESGKS 69
Query: 441 PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 620
S L+ TRELA QI+ + ++KY + + V+ FGG + E +L+ I
Sbjct: 70 ASRKTARALIFAPTRELAEQIADNIKAYTKY-TNLSVAAIFGGRKMSSQERMLENGV-DI 127
Query: 621 VVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFS 800
+V TPGR+ + DE D++L+ + V++I + Q+MMFS
Sbjct: 128 LVATPGRLEEHIESGNVSVANIEFLVFDEADRILD-MGFINAVRKIMLDVETNPQIMMFS 186
Query: 801 ATLSKEIRPVCKKFMQDPMEVYVXDE 878
AT S ++ + K ++ P + V E
Sbjct: 187 ATTSSQLNELSKDILRKPKRIAVERE 212
>UniRef50_Q1J0S9 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Deinococcus|Rep: DEAD/DEAH box helicase-like protein -
Deinococcus geothermalis (strain DSM 11300)
Length = 591
Score = 109 bits (262), Expect = 1e-22
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 8/230 (3%)
Frame = +3
Query: 261 DFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE 440
D L+ PE+ + + G S +Q E +P + G D++ +A++G GKT F L +Q L
Sbjct: 4 DQLIAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLT 63
Query: 441 PSESH--------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
+ +V+ TRELA Q+++E+ + +S V V +GG E
Sbjct: 64 APDGRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGPQLSTVTV---YGGAAYGPQENA 120
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
L+ +VVGTPGR++ +LDE D+ML S+ ++ I + TP
Sbjct: 121 LRRGVD-VVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEML-SVGFADAIETILQQTPA 178
Query: 777 GKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
+Q M+FSATL+ EI + +K++++P+ V + E K + +H +K+K
Sbjct: 179 ARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEH-LKVK 227
>UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=2;
Culicidae|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 1061
Score = 109 bits (262), Expect = 1e-22
Identities = 70/229 (30%), Positives = 103/229 (44%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L +LR + F HPS +Q IP A LG+D+L QAKSG GKT VF + +
Sbjct: 24 FSKMFLSEPVLRGLTRNNFTHPSPIQARAIPLAKLGLDLLVQAKSGTGKTLVFTVLITEN 83
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
P L + TRE+A QI R + R F GG+ I +D + L++
Sbjct: 84 HNPDVMFPQSLTVVPTREIAVQIEDVLNRIGYSVPNFRAKSFIGGLDISQDRKNLQSC-- 141
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
VVGTPGRI +LDE D ++ ++ +V +I + P +Q ++
Sbjct: 142 SAVVGTPGRINHLIKSNVLNTSQIKILVLDEADSLITG-SLKPEVDQIVKMLPTKRQTVV 200
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
SAT K++ D + LHG++Q +L E + N
Sbjct: 201 CSATYYNNRDRELLKYLNDKFIGVTPKKEVPVLHGIRQFVQELPEAKDN 249
>UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_146,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 564
Score = 109 bits (262), Expect = 1e-22
Identities = 64/230 (27%), Positives = 124/230 (53%), Gaps = 3/230 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L +++A D G+ HP+ VQ + IP + G D+L + +G GKTA F+L +Q+
Sbjct: 118 FHQLKLNKALVKACHDQGYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQR 177
Query: 435 LEPSESHVY--VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
++ Y L++ TRELA Q + +E+ +KY + ++ G +PIQ+ E L+
Sbjct: 178 FGNLKNLQYSKALIILPTRELALQCFEMFEKLNKY-ANCTAALVIGAVPIQQQETELR-K 235
Query: 609 CPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
P I++ TPGR + + DE D+++E + +++++I + T +Q
Sbjct: 236 YPDIIIATPGRTVDLLTNSSSLEIQNIEILVFDEADRLME-MGFEKEIRQILQATSKDRQ 294
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENE 935
++ SATL+ ++ + + +P++V V L +GL+Q+ ++++ N+
Sbjct: 295 TVLISATLNATVKQLSLLALNNPIKVNVDFVGGL-AYGLKQYLLRIRSNQ 343
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 109 bits (261), Expect = 2e-22
Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + + E+ + I + GF + +Q + +P A+ G D+ QA++G GKTA F+++ +
Sbjct: 3 FTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIFTK 62
Query: 435 L-----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L E H L++ TREL QI K+ + KY +G + +GG+ K + L
Sbjct: 63 LLSQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKY-TGFNIQAIYGGVDYMKQRDAL 121
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP-- 773
K A IV+GTPGR++ ++DE D+M + + D++ I R P
Sbjct: 122 K-AGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFD-MGFIADLRFILRRLPPY 179
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+Q ++FSATL+ + + +FM P +V V E ++ ++Q + EK
Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPE-QMTAERVEQVLYHVSRKEK 233
>UniRef50_A1UCR5 Cluster: DEAD/DEAH box helicase domain protein;
n=31; Actinobacteria (class)|Rep: DEAD/DEAH box helicase
domain protein - Mycobacterium sp. (strain KMS)
Length = 507
Score = 109 bits (261), Expect = 2e-22
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 9/212 (4%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F ++ EI RA+ + G P +Q +P A+ G D++ QA++GMGKT F + LQ+
Sbjct: 12 FASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQR 71
Query: 435 L----EPSESHV-YVLVMCHTRELAFQISKEYERFSKYMSG----VRVSVFFGGMPIQKD 587
+ E S + L++ TREL Q+ + +KY++ + V +GG P +
Sbjct: 72 VTTDTEKELSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYEPQ 131
Query: 588 EEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRN 767
E L+ +VVGTPGR+L +LDE D+ML+ L D++ I R
Sbjct: 132 IESLRKGA-DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLD-LGFLPDIERILRQ 189
Query: 768 TPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 863
TP +Q M+FSAT+ I + + FM P +
Sbjct: 190 TPDTRQAMLFSATMPDPIITLARTFMNQPTHI 221
>UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Deltaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB)
Length = 533
Score = 108 bits (260), Expect = 2e-22
Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 9/217 (4%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L ILR I D F + + +Q +P + G+D +A++G GKTAVF++ L Q
Sbjct: 118 FHDLDLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQ 177
Query: 435 L--EPS-----ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
P+ + LV+ TRELA QI KE S++ V++ FGGM +K +
Sbjct: 178 FLRNPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAI-FGGMDYEKQKR 236
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
L IVV TPGR+L ++DE D+ML+ + DVQ I TP
Sbjct: 237 RLTGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLD-MGFIPDVQRIIHYTP 295
Query: 774 --HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDE 878
+Q M+FSATL+ E+ ++ ++P+ V + E
Sbjct: 296 PKAQRQTMLFSATLTAEVTRFASQWTRNPVTVEIEPE 332
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 108 bits (259), Expect = 3e-22
Identities = 63/212 (29%), Positives = 114/212 (53%), Gaps = 4/212 (1%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
+S F + L PE+ + + G+E P+ +Q + IP + G D+L +A++G GKTA F L
Sbjct: 3 ASSFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPI 62
Query: 426 LQQL--EPSESH--VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
+++L P + + V LV+ TRELA Q++ + + + G+RV +GG+P++ +
Sbjct: 63 IEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDL-GMRVISVYGGVPVENQIK 121
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
LK I+V TPGR+L +LDE D+ML+ L +Q+I
Sbjct: 122 RLKRG-TDILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLD-LGFIDPIQKIMDYAA 179
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
+Q ++F+AT + + + + ++ +P ++ V
Sbjct: 180 DDRQTLLFTATADESVEVLAEFYLNNPTKIKV 211
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 108 bits (259), Expect = 3e-22
Identities = 63/205 (30%), Positives = 104/205 (50%)
Frame = +3
Query: 240 IHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL 419
+ + F + L + RAI + G+E P+ VQ G D++ ++K+G GKTA F +
Sbjct: 17 VSQASFDELGLSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAI 76
Query: 420 ATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L+++ LVMC TRELA Q+++E+ +K+ + V +GG + + + L
Sbjct: 77 PILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRD-LSVVAVYGGASMGEQLQKL 135
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+ A I+VGTPGRI LDE D+ML ++ +V I N P
Sbjct: 136 E-AGAEIIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEML-NMGFFEEVTRILDNLPKD 193
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDP 854
Q ++FSAT+ +I + + ++ DP
Sbjct: 194 CQQLLFSATVPADIEQIIRDYLTDP 218
>UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Deltaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Desulfovibrio vulgaris subsp. vulgaris
(strain DP4)
Length = 577
Score = 108 bits (259), Expect = 3e-22
Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 1/226 (0%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
L P + A + G++ VQ +P G D++ Q+++G GKT F+L L++L+P+E
Sbjct: 44 LAPRLQEACIRAGWQSLMPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLLERLDPAE 103
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 629
+ LV+ TRELA Q+ E + +G+RV+ +GG+ K + L+ H VVG
Sbjct: 104 ASTQALVLVPTRELALQVEHEARTLFE-GTGLRVAAVYGGVGYGKQNDALREGA-HFVVG 161
Query: 630 TPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK-QVMMFSAT 806
TPGR+L DE D+ML S+ D++EI R P + +FSAT
Sbjct: 162 TPGRVLDHLLRRTMQLDRLRALTFDEADRML-SIGFYPDMKEIQRYLPKRRIATCLFSAT 220
Query: 807 LSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNR 944
+ + +F+++P ++ +++ + Q + + K +K+R
Sbjct: 221 YPPHVLNLAGEFLREP-QMLSLSHSQVHVAQTQHMFCESKPMDKDR 265
>UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5;
Trypanosomatidae|Rep: DEAD box RNA helicase, putative -
Leishmania major
Length = 527
Score = 108 bits (259), Expect = 3e-22
Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D L E+ A D G++HP+ +Q I G D++ A++G GKT + L +
Sbjct: 55 FQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQTGSGKTGAYALPLVNW 114
Query: 435 L--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMP-IQKDEEVLKT 605
L + ++ VLVM TRELA Q++ ++ + + G+RV+ GG +++ E+ K
Sbjct: 115 LLAQRKTPYLSVLVMVPTRELAQQVTAQFVLLGRSV-GLRVATLVGGADMVEQACELSKR 173
Query: 606 ACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
PH+VVGTPGR+ +LDE DKML+ ++ +++ I P +
Sbjct: 174 --PHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLD-MNYEKEIDAILEQLPQNR 230
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
+ M+FSATLS +I + K ++DP+ + V + L+Q+Y+
Sbjct: 231 RTMLFSATLSTKIDRLQKASLRDPVLLQV-HRKNTTVDTLKQYYI 274
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 108 bits (259), Expect = 3e-22
Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 1/220 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D + E+ RA + G++ P+++Q E IP A+ G DI+ A++G GKTA F + LQ+
Sbjct: 43 FEDLGVCVELCRACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQK 102
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L ++ L++ TREL+ QI ++ + G+ V + GG+ + L P
Sbjct: 103 LLEKPQRLFSLILAPTRELSLQIKEQLISLGSEI-GLDVCLILGGLDMVSQALQLSKK-P 160
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
HI+VG+PGRI + +LDE DK+L S D + +I + P K
Sbjct: 161 HIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLL-STDFDDSLNKIITSLPKDKVTY 219
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQH 911
++SAT++ +I + K + P+++ V + H +Q++
Sbjct: 220 LYSATMTSKITKLQKVTLMKPIQINVNTKYHTSEHLIQKY 259
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 107 bits (258), Expect = 4e-22
Identities = 65/228 (28%), Positives = 116/228 (50%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F +K EIL+++ + GFE P+++Q +P A G DI+ QA++G GKTA F + L
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSN 62
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L+ S + + LV+ TRELA QI + KY ++++ GG+ +K + L +
Sbjct: 63 LDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCS-KIALILGGVSYEKQKAALNSGV- 120
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
+IVV TPGR+ F LDE D++L+ + ++ +I P +Q
Sbjct: 121 NIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLK-IGFYNEIIKIMNKLPKKRQNFF 179
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
F+AT ++ + + ++ + + + + + Q++V + E EK
Sbjct: 180 FTATFDEKTKKLSQEITNEAKMISMSSGLE-TTEKIDQNFVVVSEEEK 226
>UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=2; Alteromonadales|Rep: ATP-dependent RNA
helicase, DEAD box family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 399
Score = 107 bits (258), Expect = 4e-22
Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 5/215 (2%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F+ F L I+ + G++ P+ +Q ECIP + G D+L A++G GKTA F L +
Sbjct: 2 SEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPII 61
Query: 429 QQLEPSESHVYV-----LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 593
+ ++ + L++ TRELA QI + + +S + G++ V +GG+ Q +
Sbjct: 62 NKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGL-GLKTKVVYGGVGRQAQVD 120
Query: 594 VLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
++ I+V TPGR+L F+LDE D ML+ + +DVQ I P
Sbjct: 121 SIELGL-DILVATPGRLLDLIETGDINFKALEVFVLDEADTMLD-MGFFKDVQSIISKLP 178
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDE 878
+Q ++FSAT+ EI + + + DP ++ + E
Sbjct: 179 KSRQTLLFSATMPAEIEILAEAILTDPTKIQITAE 213
>UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4;
Bacteria|Rep: ATP-dependent RNA helicase protein -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 413
Score = 107 bits (258), Expect = 4e-22
Identities = 66/209 (31%), Positives = 113/209 (54%), Gaps = 4/209 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF---VLAT 425
F + L P I +++ + GF P+++Q + IP + G D+L A++G GKTA F VL T
Sbjct: 3 FESYDLAPGIKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPVLNT 62
Query: 426 LQQLEPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L ++ SE + + LVM TRELA QIS+ +++ Y + +R GG+ Q+ +
Sbjct: 63 LINVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAY-TRLRTVCITGGVE-QEAQIAAA 120
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
I+V TPGR+ +LDE D ML+ L +D+Q++ + P
Sbjct: 121 DYGIDILVATPGRMFDLIYQKHIKITRVKILVLDEADHMLD-LGFIKDIQDVKKFLPARH 179
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
Q + FSAT+++EI+ + +++P+ + +
Sbjct: 180 QTLFFSATINEEIKKLAYSLVKNPIRIQI 208
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 107 bits (258), Expect = 4e-22
Identities = 62/203 (30%), Positives = 109/203 (53%), Gaps = 1/203 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQ 431
F D L +L+++ + PSE+Q + IP + +++ A++G GKTA F L LQ
Sbjct: 3 FSDLGLNAALLQSLSENNISSPSEIQQKAIPVILNSTKNVVGVAQTGTGKTAAFGLPVLQ 62
Query: 432 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
Q+ PS VLV+ TREL Q++K+ FS+Y+ + +GG I++ + L+T
Sbjct: 63 QINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVRIHTEAVYGGKKIEEQIKKLETP- 121
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
HI+V TPGR+L ILDE D+ML ++ D+ +I + + +
Sbjct: 122 KHILVATPGRLLDLIARKAVNLSNLKYLILDEADEML-NMGFLPDIDKIMKIAKPTARKL 180
Query: 792 MFSATLSKEIRPVCKKFMQDPME 860
+F++TL E++ + ++++ +E
Sbjct: 181 LFTSTLGSELKLIIREYLGTDIE 203
>UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=7; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 542
Score = 107 bits (258), Expect = 4e-22
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 5/214 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L +L+A+ D G+ P+ +Q + IP + G D+L A++G GKTA F L L +
Sbjct: 67 FTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 126
Query: 435 L----EPSESHVY-VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L +P+ + LV+ TRELA QI++ + + K+M G+ V+ FGG+ + L
Sbjct: 127 LAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHM-GLTVATIFGGVKYGPQMKAL 185
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
A +VV TPGR++ F+LDE D+ML+ L +++I P
Sbjct: 186 -AAGVDVVVATPGRLMDHLGEKSAHLNGVEIFVLDEADQMLD-LGFVVPIRKIASQLPKE 243
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEA 881
+Q + FSAT+ EI + + +++P +V + A
Sbjct: 244 RQNLFFSATMPSEIGKLAGELLKNPAQVAITPSA 277
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 107 bits (258), Expect = 4e-22
Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 5/233 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F++ L + +A+V+ ++ P+ +Q + IP A+ G D+L A++G GKTA L L Q
Sbjct: 4 FQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPILNQ 63
Query: 435 LEPSE-----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
L + H LV+ TRELA QI ++ + +++ +R + +GG+ + L
Sbjct: 64 LGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLK-LRSVLIYGGVGQGNQVKAL 122
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
K HI+V TPGR+L F+LDE D+ML+ + D++ I P
Sbjct: 123 KRGA-HILVATPGRLLDLMNQGHIKLNQLEVFVLDEADRMLD-MGFLPDLKRIITQLPTQ 180
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+Q + FSATL+ +I + + P+ V V + + +QQ + ++ N K
Sbjct: 181 RQSLFFSATLAPKITELAHSLLSKPVTVNVTPKT-TSVEKIQQQLMFVERNFK 232
>UniRef50_Q3LW03 Cluster: UB2 probably involved in pre-mRNA
splicing; n=1; Bigelowiella natans|Rep: UB2 probably
involved in pre-mRNA splicing - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 398
Score = 107 bits (258), Expect = 4e-22
Identities = 56/183 (30%), Positives = 94/183 (51%)
Frame = +3
Query: 327 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQIS 506
VQ + AV DI+CQ + G+GKT ++V+A ++Q+ S + V L + TRELA QI
Sbjct: 55 VQLLTLVHAVSNCDIICQGRPGIGKTLIYVVAFIEQINESFNTVQALSIAPTRELAIQIF 114
Query: 507 KEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXX 686
+++ S+ +++ GG P ++ P ++V T GR+
Sbjct: 115 WIFKKLSQNEESLKIFCLIGGTPFDNQARKIRKITPKLIVSTLGRLYQQVRTKKVLLNFV 174
Query: 687 XXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVY 866
+DECD ++ES + + + +IF T KQV++ S T+S + + VCK + EVY
Sbjct: 175 NFLAIDECDHIIESQKLFKILIKIFEETHSNKQVILMSTTMSIQTKLVCKNLTKMAFEVY 234
Query: 867 VXD 875
+ D
Sbjct: 235 IND 237
>UniRef50_Q5CWJ4 Cluster: Drs1p, eIF4a-1-family RNA SFII helicase;
n=3; Cryptosporidium|Rep: Drs1p, eIF4a-1-family RNA SFII
helicase - Cryptosporidium parvum Iowa II
Length = 573
Score = 107 bits (258), Expect = 4e-22
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 17/215 (7%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS- 446
L +L+A+ D F + +Q E IP A+ G DI+ +A++G GKTA F+L L++L S
Sbjct: 37 LSRPLLKALSDLNFVEATLIQKEVIPLALSGRDIMAEAETGSGKTAAFLLPALERLLRSP 96
Query: 447 ---ESHVY------------VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQ 581
S V VLV+ +RELA Q E +KY + +V GGM IQ
Sbjct: 97 YVRNSRVSSLGRVGGAVGTKVLVLLPSRELAMQCFGVLESLTKYCPVITRAVVTGGMNIQ 156
Query: 582 KDEEVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEI 758
+ E +LK PHIV+ TPGRIL ILDE D++L+ + R++ EI
Sbjct: 157 QQERILKCQ-PHIVIATPGRILDMLLNTLSIQLELLEIIILDEADRLLD-MGFRQECLEI 214
Query: 759 FRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 863
+ + +Q M+FSATLS+ + + + +P +V
Sbjct: 215 LKYSSRTRQTMLFSATLSRSVTDLALLALNNPCKV 249
>UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacillus cereus group|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 389
Score = 107 bits (257), Expect = 5e-22
Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 2/226 (0%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
++P + +A GF+ +E+Q + IP + G D++ ++ +G GKT ++L L ++ P
Sbjct: 5 MQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEV 64
Query: 450 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIV 623
V+V+ TREL QI +E ++F+ +G +S GG I++ E LK P ++
Sbjct: 65 KQPQVVVLAPTRELVMQIHEEVQKFT---AGTEISGASLIGGADIKRQVEKLKKH-PRVI 120
Query: 624 VGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSA 803
VG+PGRIL + DE D++++ M VQ++ ++T +Q++ FSA
Sbjct: 121 VGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQ-KMMGAVQDVIKSTMRDRQLVFFSA 179
Query: 804 TLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
T++K + +P V V L ++ Y+ + EKN
Sbjct: 180 TMTKAAEDAARDLAVEPQLVRVTRAESKSL--VEHTYIICERREKN 223
>UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1;
Idiomarina loihiensis|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 474
Score = 107 bits (257), Expect = 5e-22
Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 1/217 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L P +L + + G++ + VQ +P + D + +A +G GKT F L L +
Sbjct: 23 FNQLNLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLLAK 82
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
LE LV+C TRELA Q++ E + +K M +++ GG P + L+
Sbjct: 83 LEAKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHGA- 141
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
H++VGTPGR+L +LDE D+MLE + + + I ++ P +Q ++
Sbjct: 142 HVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLE-MGFQDSLNAIVKHIPKTRQTLL 200
Query: 795 FSATLSKEIRPVCKKFMQDPMEV-YVXDEAKLKLHGL 902
FSAT K I + ++ + + ++AK ++ L
Sbjct: 201 FSATYPKNIAALAEQVTTKARNIEAIQEQAKPQIEQL 237
>UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4;
Wolbachia|Rep: Superfamily II DNA/RNA helicase -
Wolbachia sp. subsp. Brugia malayi (strain TRS)
Length = 408
Score = 107 bits (257), Expect = 5e-22
Identities = 68/219 (31%), Positives = 112/219 (51%)
Frame = +3
Query: 282 ILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVY 461
+ +A+ F P+ VQ + IP A+ G DIL A++G GKT F + + +L +
Sbjct: 13 LAQALDKNSFSVPTPVQAQAIPLALKGKDILGSAQTGTGKTLAFAIPLIAKLLGEPNAST 72
Query: 462 VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 641
LV+ TRELA Q++ E + S +++++ GG PI + L+ P IV+GTPGR
Sbjct: 73 ALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGEPIFRQLNQLQRR-PRIVIGTPGR 131
Query: 642 ILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEI 821
I+ +LDE D+M + + ++ I + P +Q +MFSATL +I
Sbjct: 132 IIDHIERKTLITNNVSTLVLDEVDRMFD-MGFGIQIEGIMKYLPKMRQNLMFSATLPGDI 190
Query: 822 RPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+ +K+ P V V +EA + ++Q + E+EK
Sbjct: 191 VKLAEKYSNQPERVSVENEATTSVK-IKQEIIYASESEK 228
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 107 bits (257), Expect = 5e-22
Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 1/222 (0%)
Frame = +3
Query: 276 PEILRA-IVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSES 452
P+ LR + G+E ++VQ + +P A G D++ QA++G GKTA F L L++ +PS
Sbjct: 13 PDALRTGLAQLGWEFATQVQRDTVPIARQGTDVIGQARTGSGKTAAFGLPILERCQPS-G 71
Query: 453 HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGT 632
+ LV+ TRELA Q+++E+E + +G+ + +GG ++K + L I+VGT
Sbjct: 72 KLQALVLAPTRELANQVAQEFE-LLQGNAGLSIVTVYGGTDLEKQAKTLAKGV-DIIVGT 129
Query: 633 PGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLS 812
PGR++ LDE D+ML+ + D+ I +Q ++FSAT
Sbjct: 130 PGRVMDMNERGHIDLNSPKMLCLDEADRMLD-MGFFPDIMWIVERMTSRQQTLLFSATFP 188
Query: 813 KEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+EI +FM +P + + + +L + + + V++ + K
Sbjct: 189 QEIIDAAHEFMNEP-DFVLTNAEELDIPPIDLYSVRIGRSNK 229
>UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1;
Erythrobacter sp. NAP1|Rep: Cold-shock dead-box protein
A - Erythrobacter sp. NAP1
Length = 598
Score = 107 bits (257), Expect = 5e-22
Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Frame = +3
Query: 267 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--- 437
+L P I A+ + G+ P+ VQ + G D++ A++G GKT F +A Q +
Sbjct: 5 ILPPAIGEALAERGYSEPTPVQAAAMAPDSAGRDLIVSAQTGSGKTVAFGIALAQDILDQ 64
Query: 438 ---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
P + VL + TRELA Q+S+E + +G+R++ GGM K+ L++
Sbjct: 65 ISGTPLQERPLVLAIAPTRELALQVSREL-GWLYAKAGLRIATCVGGMDASKERRALRSG 123
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
P IVVGTPGR+ +LDE D+ML+ + R D++EI TP ++
Sbjct: 124 -PAIVVGTPGRLRDHLERGALDLSGLIGVVLDEADEMLD-MGFREDLEEILDATPDTRRT 181
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEV 863
++FSAT+ + I + +K+ D + +
Sbjct: 182 LLFSATMPQAIVRLAQKYQSDALRL 206
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 107 bits (257), Expect = 5e-22
Identities = 62/202 (30%), Positives = 106/202 (52%), Gaps = 3/202 (1%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG-MDILCQAKSGMGKTAVFVLAT 425
S F ++ + +++I + G P+++Q + IP + D + A++G GKTA F L
Sbjct: 2 STFAGLGIRKDYIKSIKEIGITKPTDIQEKAIPVLLKSPTDFIGLAQTGTGKTAAFGLPV 61
Query: 426 LQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG-VRVSVFFGGMPIQKDEEVLK 602
L ++ + H+ L++ TREL QI K+ +F+KY+ + + FGG I + LK
Sbjct: 62 LHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKIDRQMNNLK 121
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFR-NTPHG 779
HIV+ TPGR++ ILDE D+ML S+ ++D+ I + T
Sbjct: 122 RT-THIVIATPGRLIDLIERGAVDISHVKTVILDEADEML-SMGFKQDLNRILKFTTKSD 179
Query: 780 KQVMMFSATLSKEIRPVCKKFM 845
++ +FSAT+ EI+ + K +M
Sbjct: 180 RKTWLFSATMPDEIKRIVKTYM 201
>UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG13685;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG13685 - Caenorhabditis
briggsae
Length = 935
Score = 107 bits (257), Expect = 5e-22
Identities = 63/202 (31%), Positives = 109/202 (53%)
Frame = +3
Query: 312 EHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTREL 491
E VQ + IP +LG D+L QAKSG GKT VF + ++ L+ ++ +++ TRE+
Sbjct: 35 EKLKSVQAKAIPVGLLGRDMLVQAKSGTGKTLVFSVLAVENLDLKAHYIQKVIITPTREI 94
Query: 492 AFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXX 671
+ QI + + + +G R SV+ GG+ + + LK P IV+GTPGR+
Sbjct: 95 STQIKETVRKLTP--AGARTSVYTGGIGHKLNVIDLKKTRPQIVIGTPGRVAQLIRMGAM 152
Query: 672 XXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQD 851
F+LDE DK+++ + + D+ I + P +QV +FSAT + + + F++D
Sbjct: 153 DISHVDFFVLDEADKLMDEV-FKPDINTIINSLPPIRQVAVFSATYPRNLDLLLSTFLRD 211
Query: 852 PMEVYVXDEAKLKLHGLQQHYV 917
V ++ ++L G++Q+ V
Sbjct: 212 AALVR-FNQDDVQLVGIKQYVV 232
>UniRef50_Q2GSC7 Cluster: Putative uncharacterized protein; n=6;
Pezizomycotina|Rep: Putative uncharacterized protein -
Chaetomium globosum (Soil fungus)
Length = 1029
Score = 107 bits (257), Expect = 5e-22
Identities = 75/234 (32%), Positives = 113/234 (48%), Gaps = 6/234 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L P +++A+ FE P+ VQ + IP A+ G D+LC+AK+G GKTA +VL L
Sbjct: 308 FAELGLDPRLVQAVAKQSFEKPTLVQRKAIPLALQGQDVLCKAKTGSGKTAAYVLPVLSA 367
Query: 435 LEPSES-----HVYVLVMCHTRELAFQISKEYERFSKYMS-GVRVSVFFGGMPIQKDEEV 596
+ +S L++ TRELA Q+ K E+FS + + + + + +
Sbjct: 368 ILKRKSTDPAPFTAGLILVPTRELADQVFKAIEQFSAFCAKDIHAAKLTENVSDAVQRSL 427
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
L P IVV TP R +LDE D +L S D++ I R P
Sbjct: 428 LANV-PDIVVSTPARAWHSVNSSALSLSQLQYLVLDEADLVL-SYGYDEDMENIARALPK 485
Query: 777 GKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
G Q M SATLS E+ + F ++P + + +E + L Q YVK E++K
Sbjct: 486 GVQTTMMSATLSAELDTLKGIFCRNPTVLDLQEEFGAEDEKLTQFYVKCAEDDK 539
>UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;
n=7; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 24 - Arabidopsis thaliana (Mouse-ear cress)
Length = 760
Score = 107 bits (257), Expect = 5e-22
Identities = 70/212 (33%), Positives = 108/212 (50%), Gaps = 5/212 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA---- 422
F D +I+ AI +E P+ +Q + +P + G D++ AK+G GKTA FVL
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 423 TLQQLEPSESHVYVLVMC-HTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
+ Q E + V+C TRELA QI E ++FSK G+RVS +GGM + + L
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSK-AYGLRVSAVYGGMSKHEQFKEL 348
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
K C IVV TPGR++ +LDE D+M + L V+ I
Sbjct: 349 KAGC-EIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD-LGFEPQVRSIVGQIRPD 406
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXD 875
+Q ++FSAT+ ++ + ++ + DP+ V V +
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVGE 438
>UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX49;
n=34; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX49 - Homo sapiens (Human)
Length = 483
Score = 107 bits (257), Expect = 5e-22
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 3/195 (1%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
+GF + L ++ G + P+ VQ CIP + G D L AK+G GKTA FVL L
Sbjct: 2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
Q+L ++ LV+ TRELA+QI++++ K + G++ + GGM + L
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDMVAQALELSRK 120
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLES--LDMRRDVQEIFRNTPHG 779
PH+V+ TPGR+ F ++DE D++LE D D++ I P
Sbjct: 121 -PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAR 179
Query: 780 KQVMMFSATLSKEIR 824
+Q ++FSATL+ +R
Sbjct: 180 RQTLLFSATLTDTLR 194
>UniRef50_A4R5B8 Cluster: ATP-dependent RNA helicase DBP10; n=2;
Sordariomycetes|Rep: ATP-dependent RNA helicase DBP10 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 914
Score = 107 bits (257), Expect = 5e-22
Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 2/233 (0%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S GF+ L P +L+AI GF P+ +Q + IP + D++ A++G GKTA FV+
Sbjct: 89 SGGFQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPM 148
Query: 426 LQQLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
+++L + V L+M +RELA Q K + F K + ++ + GG ++ D+
Sbjct: 149 IERLRAHSARVGARALIMSPSRELALQTLKVVKEFGK-GTDLKTVLLVGGDSLE-DQFGF 206
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
T P I++ TPGR L + DE D++ E + + EI + P
Sbjct: 207 MTTNPDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFE-MGFATQLTEILHSLPPS 265
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+Q ++FSATL + + + +QDP V + E K+ L+ + +K EK
Sbjct: 266 RQTLLFSATLPRSLVEFARAGLQDPSLVRLDAETKIS-PDLESAFFSVKGAEK 317
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 107 bits (256), Expect = 7e-22
Identities = 65/186 (34%), Positives = 95/186 (51%)
Frame = +3
Query: 366 DILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGV 545
D++ QAKSG GKT VF + L+ ++ + VL++ TRE+A QI M G+
Sbjct: 5 DLIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEMEGL 64
Query: 546 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 725
R VF GG D + LK HI VGTPGRI F+LDE DK+L+
Sbjct: 65 RSHVFIGGTLFGPDRQKLKKC--HIAVGTPGRIKQLIEYEVLKTGTIRLFVLDEADKLLD 122
Query: 726 SLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQ 905
+ V I+ + KQ++ SAT + + K+M++PM V + + L L G++
Sbjct: 123 D-TFQEQVNWIYNHLSDNKQMLALSATYPEYLAKHLTKYMREPMFVRL-NPKDLALRGIK 180
Query: 906 QHYVKL 923
Q YV+L
Sbjct: 181 QLYVEL 186
>UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacteroidales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 427
Score = 107 bits (256), Expect = 7e-22
Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 4/209 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L E+L + F + VQ IP + G D++ A++G GKTA ++L L +
Sbjct: 3 FDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPILDR 62
Query: 435 LEPSE---SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L E V ++M TRELA QI ++ E FS +M V+++ G + +++
Sbjct: 63 LSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRRGM 122
Query: 606 AC-PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
A IV+ TPGR+++ F+LDE D+ML+ + D+ +I++ P
Sbjct: 123 AMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLD-MGFFDDIMQIYKQLPSSC 181
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
Q +MFSAT+ +IR + ++DP+EV +
Sbjct: 182 QTVMFSATMPPKIRKLAASILRDPIEVEI 210
>UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular
organisms|Rep: DEAD/DEAH box helicase - Thiobacillus
denitrificans (strain ATCC 25259)
Length = 533
Score = 107 bits (256), Expect = 7e-22
Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 4/209 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L P IL++++ G+E+ + VQ + IP A+ G D+L + +G GKTA F+L ++Q+
Sbjct: 3 FSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQR 62
Query: 435 L--EPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L EP+ + VLV+ TRELA Q+ K + K M R + GG P + L
Sbjct: 63 LLAEPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKRLS 122
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
+VV TPGR++ +LDE D+ML+ + D++ I P +
Sbjct: 123 QPV-DVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLD-MGFVDDIKAIAARCPAER 180
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
Q ++FSATL + + ++ +D + +
Sbjct: 181 QTLLFSATLDGVVGNLARELTRDAQRIEI 209
>UniRef50_A4BBH5 Cluster: Probable ATP-dependent RNA helicase; n=1;
Reinekea sp. MED297|Rep: Probable ATP-dependent RNA
helicase - Reinekea sp. MED297
Length = 448
Score = 107 bits (256), Expect = 7e-22
Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 4/212 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F F L P++ AI G+ P++VQ IPQA+ G D+L A++G GKTA ++L L +
Sbjct: 2 FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHR 61
Query: 435 L---EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
+ ++ + VLVM TRELA Q+ K+ E ++ +G++ + GG Q +L+
Sbjct: 62 VLSERKPKAGIRVLVMVPTRELAQQVMKDCEALTQ-QTGLKTVIIRGGQEFQYQASLLRR 120
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
P IV+ TPGR+ +LDECD+ML+ + R +V I + Q
Sbjct: 121 N-PEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRMLD-MGFRDEVLAIAGQIRNDHQ 178
Query: 786 VMMFSATLS-KEIRPVCKKFMQDPMEVYVXDE 878
++ SATL + + V K + D + + E
Sbjct: 179 TLLLSATLKHRGVSSVAKDILNDAEFIQIKPE 210
>UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like -
Pseudomonas putida W619
Length = 621
Score = 107 bits (256), Expect = 7e-22
Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 4/228 (1%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
+S F F L +L+A+ + F P+ VQ IP A+ G D+ A++G GKTA FVL
Sbjct: 181 TSVFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPL 240
Query: 426 LQQ---LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
L + L+ + + L++ TRELA Q K+ + FS++ + ++ + GG ++ +
Sbjct: 241 LNRLVDLKGARVEIRALILLPTRELAQQTLKQVQLFSQF-TYIKAGLVTGGEDFKEQAAM 299
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
L+ P +++GTPGR+L ILDE D+ML+ + D++ + + +
Sbjct: 300 LRKV-PDVLIGTPGRLLEQLNAGNLDLSHVQVMILDEADRMLD-MGFAEDMERLCKECEN 357
Query: 777 GKQVMMFSATL-SKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYV 917
+Q ++FSAT +R + K ++DP + + ++L G +Q +
Sbjct: 358 REQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQL-AEGTRQQVI 404
>UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein;
n=22; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain ANA-3)
Length = 491
Score = 107 bits (256), Expect = 7e-22
Identities = 61/233 (26%), Positives = 118/233 (50%), Gaps = 4/233 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F L +++A+ + G+ P+ +Q + IP + G ++L A++G GKTA FVL L +
Sbjct: 3 FSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 435 LEPS----ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
+ V +++ TRELA Q+ + +++KY+ + +GG+ ++ L
Sbjct: 63 FADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLP-LTAMAMYGGVDAAPQKKRLI 121
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
++V TPGR+L +LDE D+ML+ + D+ I P +
Sbjct: 122 EGV-DLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLD-MGFIEDINSIIEKLPEQR 179
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
Q ++FSATLSK+++ + K + D +E+ + ++ H + Q + +++K+
Sbjct: 180 QNLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTH-IDQWLTTVDKDKKS 231
>UniRef50_A0EIJ0 Cluster: Chromosome undetermined scaffold_99, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_99,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 706
Score = 107 bits (256), Expect = 7e-22
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 2/233 (0%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S GF L PE+ RAI GF P+ +Q + IPQ + G DI+ +K+G GKTA F++
Sbjct: 9 SGGFESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAFLIPL 68
Query: 426 LQQLEPSESHVYV--LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
+ +L+ + V + L++ TRELA QI+ + K+ S ++ S+ GG + E L
Sbjct: 69 INKLQNHSTVVGIRGLILLPTRELALQIASVLKALLKF-SDIQYSIMVGGHGFEGQFESL 127
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+ P I++ TPGR+L I DE D + E + + +++I + P
Sbjct: 128 -ASNPDILICTPGRVLQHLLEDRLKLSRVQMVIYDEADFLFE-MGLADQLKQILSHLPSQ 185
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
KQ +MFSAT+ +++ ++D + + E +L +Q H++ + K
Sbjct: 186 KQSLMFSATIPEQLSMFASVGLKDYIFCKLDKEFQLP-DSMQLHFLFAANDNK 237
>UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=1;
Propionibacterium acnes|Rep: Putative ATP-dependent RNA
helicase - Propionibacterium acnes
Length = 561
Score = 106 bits (255), Expect = 9e-22
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Frame = +3
Query: 213 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 392
K + + VS+ +S F D ++ +I +A+ G P +Q IP AV G D++ QA++G
Sbjct: 42 KTLTETTVSVPTS-FADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTG 100
Query: 393 MGKTAVFVLATLQQLE----------PSESHVYVLVMCHTRELAFQISKEYERFSKYMSG 542
GKT F + L ++ ++ LVMC TRELA Q+SK+ + + G
Sbjct: 101 TGKTLAFGITILLRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAAS-VRG 159
Query: 543 VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKML 722
RV +GG+ + + LK +VVGTPGR+L +LDE D+ML
Sbjct: 160 ARVLTVYGGVGYESQIDALKAGVD-VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML 218
Query: 723 ESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 863
+ L DV+ + TP +Q M+FSAT+ I + + + P+ V
Sbjct: 219 D-LGFLPDVENLIGRTPASRQTMLFSATMPAPIMALARSQLHRPVHV 264
>UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=2;
Aurantimonadaceae|Rep: Superfamily II DNA and RNA
helicase - Fulvimarina pelagi HTCC2506
Length = 457
Score = 106 bits (255), Expect = 9e-22
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 5/213 (2%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S+ F F L + RA+ P+ +Q IP A+ G D+L A++G GKTA F L
Sbjct: 3 STTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPL 62
Query: 426 LQQL-----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
L L +P+ L++ TRELA QI++ S+ + + V FGG+ ++
Sbjct: 63 LHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEG-TPISHCVVFGGVSVRPQI 121
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
+ L I+V TPGR+L ILDE D+ML+ + RDV +I
Sbjct: 122 QALARGVD-ILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLD-MGFVRDVMKIVGKC 179
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
P +Q MMFSAT+ K I + KK + +P +V V
Sbjct: 180 PDDRQSMMFSATMPKPIEDLSKKILTNPQKVSV 212
>UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein;
n=19; Alteromonadales|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 487
Score = 106 bits (255), Expect = 9e-22
Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 3/205 (1%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--EP 443
L IL AI +CG+ ++VQ + IP A+ G DI+ A++G GKTA F L L+QL +P
Sbjct: 29 LSSPILNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVLEQLSKQP 88
Query: 444 SESHVY-VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 620
++ + LVM TRELA Q+ +++S+++ ++ +GG + + ++ I
Sbjct: 89 NDKPLLRALVMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKGVEQGV-DI 146
Query: 621 VVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFS 800
+V TPGR+ ++DE D+ML+ L RD++++ R Q M+FS
Sbjct: 147 LVATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLD-LGFVRDIEKVKRLIATEHQTMLFS 205
Query: 801 ATLSKEIRPVCKKFMQDPMEVYVXD 875
AT S ++ + K + P V V +
Sbjct: 206 ATYSDAVKQLSHKMLNQPEWVNVAE 230
>UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Shewanella oneidensis
Length = 439
Score = 106 bits (255), Expect = 9e-22
Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 9/228 (3%)
Frame = +3
Query: 228 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 407
S + + F D L PE+ +A+ + GFE + +Q +P + DI QA++G GKT
Sbjct: 2 SQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTM 61
Query: 408 VFVLATLQQLEPSE-------SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 566
F++AT L S + ++M TRELA QI+K+ +K+ + ++V + +G
Sbjct: 62 AFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKH-TRLKVGIVYG 120
Query: 567 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRD 746
G +VL I++GT GRI+ +LDE D+M + L +D
Sbjct: 121 GESYDVQRKVLDQGV-DILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFD-LGFIKD 178
Query: 747 VQEIFRNTPHGKQ--VMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAK 884
++ +FR P+ Q M+FSATLS +++ + M DP++V + E K
Sbjct: 179 IRFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEK 226
>UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Lodderomyces elongisporus NRRL
YB-4239|Rep: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5 - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 994
Score = 106 bits (255), Expect = 9e-22
Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 11/212 (5%)
Frame = +3
Query: 267 LLKPEILRAIV--DCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE 440
LL PE + +++ D GF PS +Q + IP + G D++ AK+G GKT +VL ++ ++
Sbjct: 392 LLMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQ 451
Query: 441 ------PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
P E + LV+ TRELA QI KE +FS M ++V +GG I+ LK
Sbjct: 452 DQLFPKPGEGPI-GLVLSPTRELALQIEKEILKFSSTMD-LKVCCCYGGSNIENQISELK 509
Query: 603 TACPHIVVGTPGR---ILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP 773
+++V TPGR +LA +LDE D+M + + +Q+IF
Sbjct: 510 RGV-NVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFD-MGFEPQIQKIFTQIR 567
Query: 774 HGKQVMMFSATLSKEIRPVCKKFMQDPMEVYV 869
KQ ++FSAT +++ + KK + +P+E+ V
Sbjct: 568 PDKQTVLFSATFPRKLEQLAKKVLHNPIEIIV 599
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 106 bits (254), Expect = 1e-21
Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 6/194 (3%)
Frame = +3
Query: 306 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL------EPSESHVYVL 467
GF P+ +Q + IP + G D+L A++G GKTA + L +Q L E + H L
Sbjct: 22 GFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQMLSRQSREETAPKHPRAL 81
Query: 468 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 647
++ TRELA Q+ ++++++ V+V +GG I+ +E L I++ TPGR+L
Sbjct: 82 ILAPTRELAQQVFDNLKQYAQHTELAIVTV-YGGTSIRVQQEQLAKGV-DILIATPGRLL 139
Query: 648 AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRP 827
+LDE D+ML+ + D+Q I + P +Q ++FSAT ++
Sbjct: 140 DHLFTKKTSLNQLQMLVLDEADRMLD-MGFLPDIQRIMKRMPEERQTLLFSATFETRVKA 198
Query: 828 VCKKFMQDPMEVYV 869
+ + M++P+EV V
Sbjct: 199 LAYRLMKEPVEVQV 212
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 106 bits (254), Expect = 1e-21
Identities = 59/199 (29%), Positives = 102/199 (51%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F++ L ++L A+ F +E+Q IP + G +I ++ +G GKTA FVL L++
Sbjct: 3 FKELQLSDKVLVALEKANFNEATEIQARAIPLFLEGKNIFGKSSTGTGKTASFVLPILEK 62
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
+EP++ V ++M TRELA QI + F + + ++ GG ++ + LK +
Sbjct: 63 IEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQIKRLKDS-- 120
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
IVVGTPGR+ ILDE D+ML+ + + ++ +F Q+ +
Sbjct: 121 QIVVGTPGRVNDHLNRKTLKLDDVRTIILDEADEMLK-MGFKNEIDALFERVSPDVQIGL 179
Query: 795 FSATLSKEIRPVCKKFMQD 851
FSAT S ++ + +M +
Sbjct: 180 FSATTSPKVMQIANDYMNE 198
>UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3;
Deltaproteobacteria|Rep: DEAD/DEAH box helicase-like -
Desulfovibrio desulfuricans (strain G20)
Length = 530
Score = 106 bits (254), Expect = 1e-21
Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 4/207 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F F L P ++ A+ GF +P+ +Q + +P A+ G DIL A +G GKTA FVL L +
Sbjct: 58 FARFSLHPALIEAVSARGFVNPTPIQEKALPPALAGQDILGLAATGTGKTAAFVLPLLHR 117
Query: 435 L----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L E + + LV+ TREL QI +E + +++ +R + +GG+ + L+
Sbjct: 118 LLLQGESARGTLRALVVAPTRELVAQIHEEVKTLARFCR-LRSATVYGGVGMHAQTVQLR 176
Query: 603 TACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK 782
T IV+ PGR+L +LDE D M + + DV+EI T K
Sbjct: 177 TGV-DIVLACPGRLLDHVRRGHADLSHVDMLVLDEADMMFD-MGFLSDVREILHCTRVRK 234
Query: 783 QVMMFSATLSKEIRPVCKKFMQDPMEV 863
Q M+FSAT+ +R + ++ ++ P+ +
Sbjct: 235 QTMLFSATMPAPLRELAEECLRQPVRI 261
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 106 bits (254), Expect = 1e-21
Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 1/206 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAVFVLATLQ 431
F +F + +I++ + GF + VQ + IP + D++ A++G GKTA F + +Q
Sbjct: 4 FAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPLIQ 63
Query: 432 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
+ LV+C TREL Q++ + +Y+ +++ +GG I E L+
Sbjct: 64 LTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELRKGA 123
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
+VV TPGR+ +LDE D+ML+ + + ++ I TP K +
Sbjct: 124 -QVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQ-MGFQDELNAILAVTPDSKNTL 181
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYV 869
+FSAT+ +E+ + +M+DP+E+ V
Sbjct: 182 LFSATMPREVAAIAANYMKDPLEIIV 207
>UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 643
Score = 106 bits (254), Expect = 1e-21
Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 3/202 (1%)
Frame = +3
Query: 267 LLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--E 440
L+KP +L+A+ + +E P+ +Q IP A+ G D+L + +G GKTA F++ LQ+
Sbjct: 197 LIKP-LLKAVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQKFYRS 255
Query: 441 PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 620
P ++ L++ TRELAFQI + + + +KY + +R + G +QK E L+ P +
Sbjct: 256 PFTNYSKALIVTPTRELAFQIYEVFTKLNKY-TKLRACLVIGQSAMQKQEAELR-GNPEV 313
Query: 621 VVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMF 797
++ TPGR++ I DE DK+L+ L Q I N +Q ++F
Sbjct: 314 IIATPGRLIDHLQNSRSIDLDNLEVLIFDEADKLLD-LGFEAAAQNIVENCNRERQTLLF 372
Query: 798 SATLSKEIRPVCKKFMQDPMEV 863
SATL+ E+ + ++ P+ +
Sbjct: 373 SATLTSEVNKLIDIALRKPIRI 394
>UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent rRNA
helicase RRP3 - Encephalitozoon cuniculi
Length = 400
Score = 106 bits (254), Expect = 1e-21
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 1/230 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D + +++ + G P+EVQ + IP + G D++ +++G GKT FVL +
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L Y LV+ TREL+ QI++ + F +G+RV + GG L P
Sbjct: 63 LLQKNRSFYCLVVAPTRELSSQIAECFNMFQ--ATGLRVCLLVGGANFNVQANQLSKR-P 119
Query: 615 HIVVGTPGRILA-XXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
H+VVGTPGRI F+LDE D+ E D D++ I + +Q +
Sbjct: 120 HVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQ-DFVEDLETIIPSLREKRQTL 178
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKN 941
+F+AT+S EI + ++ P + ++ + + L+++Y+ + KN
Sbjct: 179 LFTATMSDEISKLSSSILKRPKTIRTAEKYE-TVPALKEYYLFVAMKWKN 227
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 105 bits (253), Expect = 2e-21
Identities = 67/236 (28%), Positives = 123/236 (52%), Gaps = 5/236 (2%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S F+ L +++A+ G+ P+ +Q + IP + G D+ A++G GKTA F L +
Sbjct: 5 SVSFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPS 64
Query: 426 LQQLEPS-----ESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
+ L + + +L++ TRELA QI++ +++++ + V+ FGG+PI +
Sbjct: 65 IHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLR-MSVNAVFGGVPIGRQM 123
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
+L I+V TPGR+L F+LDE D+ML+ L ++ I +
Sbjct: 124 RMLDRGTD-ILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLD-LGFIHALRRIDKLL 181
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
P +Q + FSAT+ K I+ + +F+ DP+ V V ++ ++Q + + ++EK
Sbjct: 182 PKNRQTLFFSATMPKTIQELSSQFLSDPVTVSVAPQSS-TAERVEQFGIFVNQSEK 236
>UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1;
Salinibacter ruber DSM 13855|Rep: ATP-dependent RNA
helicase - Salinibacter ruber (strain DSM 13855)
Length = 478
Score = 105 bits (253), Expect = 2e-21
Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 3/222 (1%)
Frame = +3
Query: 288 RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVL 467
+A+ G+ +VQ + IP + G D++ Q+++G GKT F+L + P + VL
Sbjct: 54 QAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVL 113
Query: 468 VMCHTRELAFQISKEYERF---SKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 638
++ TRELA QI +E+E+ + + + + +GG+ Q + LK +V+GTPG
Sbjct: 114 ILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGA-QVVIGTPG 172
Query: 639 RILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKE 818
RIL +LDE D+ML S+ D+++I + P + M+SAT+ +
Sbjct: 173 RILDHIKKDNFDASTLRMLVLDEADEML-SMGFYPDMKDIVEHVPGDRVSYMYSATMPPK 231
Query: 819 IRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNR 944
+R V ++F+ DP + + + K+ + + Y + +K+R
Sbjct: 232 VRSVAREFLDDPGFLSLSTD-KVSVEENEYRYYLVNPMDKDR 272
>UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable
ATP-dependent RNA helicase - Lentisphaera araneosa
HTCC2155
Length = 482
Score = 105 bits (253), Expect = 2e-21
Identities = 60/201 (29%), Positives = 102/201 (50%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+D LK IL AI G++ P+ +Q++ + + G D L +AK+G GKTA F + LQ
Sbjct: 7 FQDLGLKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAKTGTGKTAAFAIPALQH 66
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L H VL++ REL QIS+E+ + K + RV+ GG + ++ L A
Sbjct: 67 LRAEVQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVKKSLHGA-- 124
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
++ TPGR++ ++DE D++ + + R V I ++ P Q ++
Sbjct: 125 QVISATPGRLIDIKEQGLLNSNCINMLVIDEADRLFD-MGFREAVTSILKDLPKSVQTVL 183
Query: 795 FSATLSKEIRPVCKKFMQDPM 857
SAT + +I+ K ++ P+
Sbjct: 184 CSATFTDDIKNFSKTLLKKPV 204
>UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
LD28101p - Nasonia vitripennis
Length = 782
Score = 105 bits (252), Expect = 2e-21
Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 2/231 (0%)
Frame = +3
Query: 201 VAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQ 380
+ + + K S S GF+ L ++R I+ G++ P+ +Q + IP A+ G D++
Sbjct: 22 IIKENKKKAGKKSNKSGGFQSMGLSQSVIRGILKRGYKIPTPIQRKTIPIALDGRDVVAM 81
Query: 381 AKSGMGKTAVFVLATLQQLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVS 554
A++G GKTA F++ ++L+ ++ L++ TRELA Q + + ++ +G++ S
Sbjct: 82 ARTGSGKTACFLIPMFEKLKTRQAKTGARALILSPTRELALQTQRFIKEIGRF-TGLKSS 140
Query: 555 VFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLD 734
V GG + + P I+V TPGR L I DE D++ E +
Sbjct: 141 VILGGDSMDNQFSAIH-GNPDIIVATPGRFLHICIEMDMNLKSIEFVIFDEADRLFE-MG 198
Query: 735 MRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKL 887
+ EI P +Q ++FSATL K + +++P+ V + E+KL
Sbjct: 199 FGEQIHEIANRLPKNRQTLLFSATLPKVLVEFATAGLRNPVLVRLDVESKL 249
>UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG32344-PA - Apis mellifera
Length = 743
Score = 105 bits (252), Expect = 2e-21
Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 2/216 (0%)
Frame = +3
Query: 246 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 425
S GF+ L IL+ I+ G++ P+ +Q + IP A+ G DI+ A++G GKTA F++
Sbjct: 35 SGGFQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPL 94
Query: 426 LQQLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 599
++L+ ++ V L++ TRELA Q K + ++ +G++ ++ GG ++ +
Sbjct: 95 FEKLKIRQAKVGARALILSPTRELALQTLKFIKELGRF-TGLKATIILGGDNMENQFSAI 153
Query: 600 KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
P I++ TPGR L + DE D++ E + + EI P
Sbjct: 154 H-GNPDILIATPGRFLHICIEMDLQLNNIEYVVFDEADRLFE-MGFGEQINEIINRLPES 211
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKL 887
+Q ++FSATL K + K + DP+ + + E K+
Sbjct: 212 RQTLLFSATLPKLLVDFAKIGLNDPVLLRLDVENKI 247
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 105 bits (252), Expect = 2e-21
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 3/231 (1%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQ 431
F+ L IL AI G+E P+ +Q + IP + G + ++ QA++G GKTA F + ++
Sbjct: 4 FQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLIE 63
Query: 432 QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 611
+L+ + V LV+ TRELA Q+ E + K + + +GG+ I LK
Sbjct: 64 RLDEKANDVQALVLTPTRELALQVCNEIDSL-KGNKRLNLLPVYGGVSIGNQIRALKRRV 122
Query: 612 PHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
+VVGTPGRI+ ++DE D+ML+ + DV+ I T KQ++
Sbjct: 123 -DLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLD-MGFIEDVEMILSKTNKEKQIL 180
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYVXDEAK--LKLHGLQQHYVKLKENEK 938
MFSAT+ + I + +K M + V E K + + +Q Y + E+ K
Sbjct: 181 MFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNK 231
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 105 bits (252), Expect = 2e-21
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 1/236 (0%)
Frame = +3
Query: 234 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGM-DILCQAKSGMGKTAV 410
+SIH F D + + + + D P+E+Q + IP + DI+ AK+G GKTA
Sbjct: 1 MSIH---FSDLGINLALQQRLNDLKIITPTEIQEKVIPIVLNDKEDIVALAKTGTGKTAA 57
Query: 411 FVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDE 590
F L LQ ++ + + +++ TREL QI+ F+++ S V ++ GG+PI+
Sbjct: 58 FGLPLLQLIDVNNDAIQAIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGIPIKPQI 117
Query: 591 EVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNT 770
E LK A HI+V TPGR+ FILDE D+M+ +L + + I +
Sbjct: 118 ERLKEA-THIIVATPGRLADLVKREAIDIKSISYFILDEADEMVTAL--KEGLDSIIKEI 174
Query: 771 PHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
P ++ +F+ATL ++ + + +M + + L G+ YV + EK
Sbjct: 175 PKARRTFLFTATLPGTLKQLIQNYMAPKVIQIEANMTTLGHQGIDHQYVVVAPIEK 230
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,635,694
Number of Sequences: 1657284
Number of extensions: 17628386
Number of successful extensions: 44601
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 41865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43403
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 113846332040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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