Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_L23
(1149 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 359 e-100
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 150 4e-37
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 142 8e-35
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 129 6e-31
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 116 5e-27
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 113 6e-26
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 113 6e-26
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 111 2e-25
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 100 3e-22
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 100 4e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 95 1e-20
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 95 2e-20
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 91 2e-19
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 86 8e-18
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 86 8e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 84 4e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 79 2e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 77 5e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 66 7e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 64 5e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 53 9e-08
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 3.7
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 359 bits (883), Expect = e-100
Identities = 169/253 (66%), Positives = 198/253 (78%), Gaps = 2/253 (0%)
Frame = +3
Query: 192 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 371
+ E K + KGSYV IHS+GFRDFLLKPE+LRAI D GFEHPSEVQ CIPQ++LG D+
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 372 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 551
LCQAKSGMGKTAVFVL+TLQQ+EP + V VLV+CHTRELAFQI EY RFSKY+ VR
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 552 SVFFGGMPIQKDEEVL--KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 725
+VF+GG+ I++D E K+ PHIVV TPGR+ A F+LDECDK+LE
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
Query: 726 SLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQ 905
S+DMRRD+QE+FR TP KQVMMFSATLS EIRP+CKKFMQ+P+E+YV DE KL LHGLQ
Sbjct: 212 SVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQ 271
Query: 906 QHYVKLKENEKNR 944
QHYVKL+E KNR
Sbjct: 272 QHYVKLEEKAKNR 284
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2
Query: 962 DVXEFNQVVIXVKSVQXXIXLAXXXTDXNXP 1054
D EFNQVVI VKSV L + N P
Sbjct: 291 DSLEFNQVVIFVKSVSRANELDRLLRECNFP 321
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 150 bits (363), Expect = 4e-37
Identities = 82/228 (35%), Positives = 131/228 (57%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ +S + L++ TRELA Q S+ + K+M+ V+V V GG + +D+ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTV 163
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
HIVVGTPGR+L F++DE DK+L S + ++++ P +Q+ +
Sbjct: 164 HIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLL-SPEFTPIIEQLLSYFPKNRQISL 222
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEK 938
+SAT ++ K + P E+ + DE L L G+ Q+Y + E++K
Sbjct: 223 YSATFPLIVKNFMDKHLNKPYEINLMDE--LTLRGVTQYYAFVDESQK 268
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 142 bits (344), Expect = 8e-35
Identities = 84/227 (37%), Positives = 124/227 (54%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D LKPE+LR I GFE PS +Q I + D+L QA+SG GKTA F ++ LQ+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++ S L++ TRELA QI K M+ V GG ++ D L+ A
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ-AGV 138
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMM 794
H+VVGTPGR+ F+LDE D+ML S + + +IF+ P QV++
Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEML-SRGFKDQIYDIFQLLPPTAQVVL 197
Query: 795 FSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENE 935
SAT+ +++ V KFM+DP+ + V + +L L G++Q YV +++ E
Sbjct: 198 LSATMPQDVLEVTTKFMRDPIRILVKKD-ELTLEGIKQFYVAVEKEE 243
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 129 bits (312), Expect = 6e-31
Identities = 76/229 (33%), Positives = 119/229 (51%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S F + LK ++LR I G+E PS VQ I Q G D++ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
Q ++ S L++ TRELA QI +M+ V+ GG + D + L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG 139
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
H+V GTPGR+ ILDE D++L + + +I+R P G QV
Sbjct: 140 -QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ-GFKEQIYDIYRYLPPGTQV 197
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENE 935
++ SATL +++ + KF +P+ + V + +L L GL+Q+++ +++ E
Sbjct: 198 VVVSATLPQDVLEMTNKFTTNPVRILVKRD-ELTLEGLKQYFIAVEKEE 245
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 116 bits (280), Expect = 5e-27
Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 4/239 (1%)
Frame = +3
Query: 222 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 401
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 402 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 572
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 573 PIQKDEEVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDV 749
++ E+ L+ P IV+ TPGR + ++DE D+MLE ++
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED-GFADEL 426
Query: 750 QEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
EI + P +Q M+FSAT++ ++ + + + P+ V+V D K L Q +V+++
Sbjct: 427 NEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFV-DNKKTTAKLLTQEFVRVR 484
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 113 bits (271), Expect = 6e-26
Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 7/235 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ- 431
F DF L P + RAI C FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 432 -----QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 596
Q++ ++ ++ L++ TRELA Q+ E+ + + S + +
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 597 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH 776
L P IV+ TP R + ++DE D ML S D++ + R+ P
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLML-SFGYNEDMKTLSRSLPR 194
Query: 777 GKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXD-EAKLKLHGLQQHYVKLKENEK 938
G Q + SATLSK I + K ++P + V D EA K L Q+ VK E +K
Sbjct: 195 GTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEASGK---LTQYVVKCSEQDK 246
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 113 bits (271), Expect = 6e-26
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 2/244 (0%)
Frame = +3
Query: 213 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 392
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 393 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 566
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 567 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRD 746
G+ +++ +L + P IVV TPGR L + DE D++ E +
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFE-MGFAAQ 233
Query: 747 VQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
+ EI P +Q ++FSATL + + K +QDP+ V + E+K+ LQ + +K
Sbjct: 234 LTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSA-DLQSAFFSVK 292
Query: 927 ENEK 938
E+
Sbjct: 293 TAER 296
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 111 bits (267), Expect = 2e-25
Identities = 63/206 (30%), Positives = 114/206 (55%), Gaps = 1/206 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F++ + E+ A GF+ P+ +Q E IP + D++ A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
L + S + +V+ TRELA+QIS+++E + GVR V GGM + + V + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKP 165
Query: 615 HIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLESLDMRRDVQEIFRNTPHGKQVM 791
H++V TPGR++ + I+DE D++L+ +D + +I + PH ++ +
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD-MDFGPIIDKILKIIPHERRTL 224
Query: 792 MFSATLSKEIRPVCKKFMQDPMEVYV 869
+FSAT++ ++ + + + P+ V V
Sbjct: 225 LFSATMTSKVEKLQRASLHQPVRVAV 250
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 100 bits (240), Expect = 3e-22
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 7/207 (3%)
Frame = +3
Query: 249 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 428
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 429 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
+ +V LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 603 TACPHIVVGTPGRI--LAXXXXXXXXXXXXXXFILDECDKMLES--LDMRRDVQEIFRNT 770
PH+VV TPGR+ + +LDE D++L+ + + EI N
Sbjct: 241 KH-PHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNP 299
Query: 771 PH-GKQVMMFSATLSKEIRPVCKKFMQ 848
H +Q +FSAT + ++ KK M+
Sbjct: 300 MHTQRQTFIFSATFDEGLQQRLKKNMK 326
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 100 bits (239), Expect = 4e-22
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 2/233 (0%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATL 428
F + LKPE+L+ I F+ PS++Q + +P + +++ Q++SG GKTA F L L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 429 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 608
+++ S + + +RELA QI KY V FG I+
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAKI 229
Query: 609 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQV 788
IV+GTPG ++ F+LDE D ML+ + I P Q+
Sbjct: 230 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 289
Query: 789 MMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLKENEKNRN 947
++FSAT S+ + ++F + E+ + E +L + G++Q Y+ + E N
Sbjct: 290 VLFSATFSERVEKYAERFAPNANEIRLKTE-ELSVEGIKQLYMDCQSEEHKYN 341
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 95.5 bits (227), Expect = 1e-20
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 8/208 (3%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 449
L + + I G+E P+ +Q + IP G D++ AK+G GKT F+L + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 450 -----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
++M TRELA QI +E + F K ++ +R +GG PI+ LK
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGA- 542
Query: 615 HIVVGTPGR---ILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQ 785
IVV TPGR +L+ +LDE D+M + L V I N +Q
Sbjct: 543 EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFD-LGFEPQVMRIINNIRPDRQ 601
Query: 786 VMMFSATLSKEIRPVCKKFMQDPMEVYV 869
++FSAT + + + +K ++ P+E+ V
Sbjct: 602 TVLFSATFPRAMEALARKVLKKPVEITV 629
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 94.7 bits (225), Expect = 2e-20
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 8/258 (3%)
Frame = +3
Query: 195 TEVAPKKE--VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 368
TE +KE V G V + F + +L+ + GFE P+ +Q + P A+ G D
Sbjct: 102 TEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Query: 369 ILCQAKSGMGKTAVFVLATLQQ------LEPSESHVYVLVMCHTRELAFQISKEYERFSK 530
++ + +G GKT + L + L P + + VLV+ TRELA QI +E +F K
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK 220
Query: 531 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDEC 710
S +R + +GG+P L I + TPGR+L +LDE
Sbjct: 221 -SSRIRNTCVYGGVPRGPQIRDLIRGV-EICIATPGRLLDMLDSNKTNLRRVTYLVLDEA 278
Query: 711 DKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLK 890
D+ML+ + +++I +Q +MFSAT KE++ + + ++ D ++V V
Sbjct: 279 DRMLD-MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAA 337
Query: 891 LHGLQQHYVKLKENEKNR 944
H ++Q V++ +N R
Sbjct: 338 SHNIKQ-IVEVVDNADKR 354
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 91.5 bits (217), Expect = 2e-19
Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 10/200 (5%)
Frame = +3
Query: 309 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---PSESHVYVLVMCH 479
++ P+ +Q P + G D++ A++G GKT F + LQ L ++S VLV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 480 TRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIVVGTPGRILAX 653
TRELA Q YE + + G + V +GG P + K A +++GTPGR+L
Sbjct: 245 TRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS--VIIGTPGRLLDL 299
Query: 654 XXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPH-----GKQVMMFSATLSKE 818
+LDE D+ML++ +D++ I +TP +Q + FSAT +
Sbjct: 300 INDGSIDCSQVGYLVLDEADRMLDT-GFEQDIRNIISHTPDPTRNGSRQTVFFSATWPES 358
Query: 819 IRPVCKKFMQDPMEVYVXDE 878
+R + F++DP+++ + +
Sbjct: 359 VRALAATFLKDPVKITIGSD 378
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 86.2 bits (204), Expect = 8e-18
Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 9/237 (3%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D L I +AI + GFE +E+Q IP + G D+L AK+G GKT F++ T++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 435 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L + V+++ TRELA QI + KY + GG + + + L
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLV 209
Query: 603 TACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP-H 776
+++V TPGR+L ++DE D++LE + ++++I + P
Sbjct: 210 KGV-NLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILE-IGFEDEMRQIMKILPSE 267
Query: 777 GKQVMMFSATLSKEIRPVCKKFMQDPMEVYV-XDEAK--LKLHGLQQHYVKLKENEK 938
+Q ++FSAT + ++ + + ++ P +YV D K + GL+Q YV + +++
Sbjct: 268 NRQTLLFSATQTTKVEDLARISLK-PGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKR 323
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 86.2 bits (204), Expect = 8e-18
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 6/234 (2%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F + L A+ + F +E+Q +CIP A+ G DIL AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 435 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 602
L S + LV+ TRELA Q + + + + + GG ++++E L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERLS 159
Query: 603 TACPHIVVGTPGRILA-XXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG 779
+I+V TPGR+L ILDE D++L+ + R + I + P
Sbjct: 160 RM--NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILD-MGFRTTLDAIVSSLPVH 216
Query: 780 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVXD-EAKLKLHGLQQHYVKLKENEK 938
+Q M+FSAT +K ++ + + +Q+P + V + + L Q Y+ + EK
Sbjct: 217 RQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEK 270
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 83.8 bits (198), Expect = 4e-17
Identities = 59/231 (25%), Positives = 114/231 (49%), Gaps = 10/231 (4%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F D + P ++ + P+++Q I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 435 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 614
S ++ L++ TRELA QI +++ ++ ++ ++ GGM + + + + + P
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIR-QSIDLSKRP 126
Query: 615 HIVVGTPGR----ILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTP--H 776
H+VV TPGR I + ++DE D++L S D+ + F P
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL-SPTFADDLDDCFSVLPASE 185
Query: 777 GKQVMMFSATLSKEIRPV---CKKFMQDPMEVYVXDEAKLKLHG-LQQHYV 917
+Q ++F+AT++ IR + +K + P+ +Y + + + LQQ Y+
Sbjct: 186 DRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYI 236
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 78.6 bits (185), Expect = 2e-15
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 27/223 (12%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 431
L E+L+ + ++ PS +Q IP + D++ A++G GKTA F++ + L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 432 QLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 605
L S H+ Y +V+ TRELA QI E +F++ + G R GG ++ +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 606 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHG-- 779
HIVV TPGR+L ++DE D+ML+ + DV +I + P
Sbjct: 375 GA-HIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLD-MGFEDDVNKILSSLPSSNA 432
Query: 780 -----------------KQVMMFSATLSKEIRPVCKKFMQDPM 857
+Q +MFSATL + + K ++ +P+
Sbjct: 433 SEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPV 475
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 77.0 bits (181), Expect = 5e-15
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 21/244 (8%)
Frame = +3
Query: 270 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL---- 437
L +L+ I G+ P+ VQ IP G D++ A++G GKTA F+ L
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 438 --------------EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMP 575
P +++ L++ TREL QI +E +F Y S VR +GG
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWVRPCAVYGGAD 294
Query: 576 IQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE---SLDMRRD 746
I+ + C ++ TPGR++ +LDE D+ML+ +R
Sbjct: 295 IRAQIRQIDQGCD-LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHI 353
Query: 747 VQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVXDEAKLKLHGLQQHYVKLK 926
V+ + +Q +MFSAT ++I+ + + F++D + + V + Q V ++
Sbjct: 354 VEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTS-ENITQKVVHVE 412
Query: 927 ENEK 938
++EK
Sbjct: 413 DSEK 416
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 66.5 bits (155), Expect = 7e-12
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Frame = +3
Query: 306 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQL---EP--SESHVYVL 467
GFE + VQ + + + + QAK+G GKT F+L + + +P + S ++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 468 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 647
++ TRELA QI +E + + Y +G+RVS GG ++E ++ ++++ TPGR+
Sbjct: 117 ILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 648 -AXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIFRNTPHGK-QVMMFSATLSKEI 821
FILDE D++++ + + I K + + FSAT+ ++
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMD-MGFAESILNIHEAVTTTKTRKLCFSATMPPKV 234
Query: 822 RPV 830
V
Sbjct: 235 SNV 237
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 63.7 bits (148), Expect = 5e-11
Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%)
Frame = +3
Query: 255 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 434
F+ + + A+ GF+ + VQ IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 435 L---EPSESHVYVLVMCHTRELA---FQISKEYERFS-KYMSGVR---VSVFFGGM-PIQ 581
+ + E+ + L++ TRELA F ++KE + + G + ++ GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 582 KDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLDMRRDVQEIF 761
D + P +V+GTPGR+ ILDE D +++ + +R +Q I
Sbjct: 123 NDLASFREKNPSVVIGTPGRL--NEMLSHISSKHLEILILDEADTLID-MGFQRTLQSII 179
Query: 762 RNTPHGKQVMMFSATLSKEIRPVCK 836
P ++ +FSAT++ + K
Sbjct: 180 SQLPKQRRTGLFSATMNDTVSSFLK 204
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 52.8 bits (121), Expect = 9e-08
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Frame = +3
Query: 327 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 503
+Q IP D+L A +G GKT ++ LQ+L+ Y +++ TREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 504 SKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXX 683
++ E+ S S + + IQ+ L+ + +GTP R L
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY-DMCIGTPMR-LVQAIQTGLSFEK 189
Query: 684 XXXFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 863
F++DE D++ E + + + T +FSAT+ + + K DP+ +
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRI 249
Query: 864 YV 869
V
Sbjct: 250 IV 251
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 372 LCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 503
+ Q G GK+ V + A LE + SHV +LV C T QI
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQI 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,844,541
Number of Sequences: 5004
Number of extensions: 75855
Number of successful extensions: 224
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 613592056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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